Phenotype measure:   HMDPpheno8   dehydrocarnitine

ID, description, units MPD:50313   dehydrocarnitine   3-dehydrocarnitine (16h fast), relative abundance  
Data set, strains HMDPpheno8   HMDP   106 strains     sex: m     age: 16wks
Procedure metabolite quantification
Ontology mappings

  STRAIN COMPARISON PLOT
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HMDPpheno8 - 3-dehydrocarnitine (16h fast), relative abundance



  MEASURE SUMMARY
Measure Summary Male
Number of strains tested106 strains
Mean of the strain means826138   None
Median of the strain means726614   None
SD of the strain means± 474567
Coefficient of variation (CV)0.574
Min–max range of strain means302994   –   4820454   None
Mean sample size per strain1.3   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
strain 21 3310112409224.36 157624400439.255 4.1477 0.0001
Residuals 34 1292109561297.96 38003222391.1165


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
129X1/SvJ m 678558.0 0.0   1   0.0 0.0 678558.0, 678558.0 -0.31
A/J m 765609.0 34051.0   2   24077.0 0.0445 741532.0, 789687.0 -0.13
AKR/J m 759209.0 0.0   1   0.0 0.0 759209.0, 759209.0 -0.14
AXB10/PgnJ m 596204.0 0.0   1   0.0 0.0 596204.0, 596204.0 -0.48
AXB12/PgnJ m 712373.0 0.0   1   0.0 0.0 712373.0, 712373.0 -0.24
AXB13/PgnJ m 996286.0 0.0   1   0.0 0.0 996286.0, 996286.0 0.36
AXB15/PgnJ m 633400.0 0.0   1   0.0 0.0 633400.0, 633400.0 -0.41
AXB19a/PgnJ m 825732.0 0.0   1   0.0 0.0 825732.0, 825732.0 0.0
AXB19b/PgnJ m 540029.0 91837.0   2   64939.0 0.17 475090.0, 604968.0 -0.6
AXB19/PgnJ m 683681.0 0.0   1   0.0 0.0 683681.0, 683681.0 -0.3
AXB1/PgnJ m 1469892.0 0.0   1   0.0 0.0 1469892.0, 1469892.0 1.36
AXB23/PgnJ m 376218.0 0.0   1   0.0 0.0 376218.0, 376218.0 -0.95
AXB24/PgnJ m 645892.0 97709.0   2   69091.0 0.151 576801.0, 714983.0 -0.38
AXB2/PgnJ m 738766.0 0.0   1   0.0 0.0 738766.0, 738766.0 -0.18
AXB4/PgnJ m 655812.0 0.0   1   0.0 0.0 655812.0, 655812.0 -0.36
AXB5/PgnJ m 696582.0 0.0   1   0.0 0.0 696582.0, 696582.0 -0.27
AXB6/PgnJ m 754914.0 0.0   1   0.0 0.0 754914.0, 754914.0 -0.15
AXB8/PgnJ m 601035.0 0.0   1   0.0 0.0 601035.0, 601035.0 -0.47
BALB/cJ m 886048.0 282413.0   3 163051.0 0.319 562098.0, 1080418.0 0.13
BTBR T+ Itpr3tf/J m 302994.0 0.0   1   0.0 0.0 302994.0, 302994.0 -1.1
BUB/BnJ m 4820454.0 0.0   1   0.0 0.0 4820454.0, 4820454.0 8.42
BXA11/PgnJ m 972673.0 0.0   1   0.0 0.0 972673.0, 972673.0 0.31
BXA12/PgnJ m 633149.0 0.0   1   0.0 0.0 633149.0, 633149.0 -0.41
BXA13/PgnJ m 802716.0 0.0   1   0.0 0.0 802716.0, 802716.0 -0.05
BXA14/PgnJ m 349366.0 0.0   1   0.0 0.0 349366.0, 349366.0 -1.0
BXA16/PgnJ m 1328331.0 47325.0   2   33464.0 0.0356 1294867.0, 1361795.0 1.06
BXA1/PgnJ m 759110.0 0.0   1   0.0 0.0 759110.0, 759110.0 -0.14
BXA24/PgnJ m 921123.0 0.0   1   0.0 0.0 921123.0, 921123.0 0.2
BXA25/PgnJ m 680141.0 0.0   1   0.0 0.0 680141.0, 680141.0 -0.31
BXA26/PgnJ m 732529.0 0.0   1   0.0 0.0 732529.0, 732529.0 -0.2
BXA2/PgnJ m 819897.0 0.0   1   0.0 0.0 819897.0, 819897.0 -0.01
BXA4/PgnJ m 619487.0 0.0   1   0.0 0.0 619487.0, 619487.0 -0.44
BXA7/PgnJ m 690006.0 0.0   1   0.0 0.0 690006.0, 690006.0 -0.29
BXA8/PgnJ m 890284.0 0.0   1   0.0 0.0 890284.0, 890284.0 0.14
BXD11/TyJ m 1072371.0 0.0   1   0.0 0.0 1072371.0, 1072371.0 0.52
BXD12/TyJ m 1371238.0 0.0   1   0.0 0.0 1371238.0, 1371238.0 1.15
BXD13/TyJ m 625959.0 0.0   1   0.0 0.0 625959.0, 625959.0 -0.42
BXD14/TyJ m 807168.0 0.0   1   0.0 0.0 807168.0, 807168.0 -0.04
BXD15/TyJ m 461490.0 0.0   1   0.0 0.0 461490.0, 461490.0 -0.77
BXD18/TyJ m 620794.0 0.0   1   0.0 0.0 620794.0, 620794.0 -0.43
BXD19/TyJ m 903416.0 61683.0   2   43616.0 0.0683 859800.0, 947032.0 0.16
BXD1/TyJ m 1020512.0 0.0   1   0.0 0.0 1020512.0, 1020512.0 0.41
BXD20/TyJ m 684449.0 0.0   1   0.0 0.0 684449.0, 684449.0 -0.3
BXD21/TyJ m 663806.0 0.0   1   0.0 0.0 663806.0, 663806.0 -0.34
BXD22/TyJ m 643766.0 0.0   1   0.0 0.0 643766.0, 643766.0 -0.38
BXD24/TyJ m 804071.0 0.0   1   0.0 0.0 804071.0, 804071.0 -0.05
BXD24/TyJ-Cep290rd16/J m 1167033.0 0.0   1   0.0 0.0 1167033.0, 1167033.0 0.72
BXD28/TyJ m 809039.0 8851.0   2   6259.0 0.0109 802780.0, 815298.0 -0.04
BXD29-Tlr4lps-2J/J m 454746.0 0.0   1   0.0 0.0 454746.0, 454746.0 -0.78
BXD2/TyJ m 970576.0 0.0   1   0.0 0.0 970576.0, 970576.0 0.3
BXD32/TyJ m 1262043.0 0.0   1   0.0 0.0 1262043.0, 1262043.0 0.92
BXD33/TyJ m 2101558.0 0.0   1   0.0 0.0 2101558.0, 2101558.0 2.69
BXD34/TyJ m 1387950.0 0.0   1   0.0 0.0 1387950.0, 1387950.0 1.18
BXD36/TyJ m 926665.0 0.0   1   0.0 0.0 926665.0, 926665.0 0.21
BXD38/TyJ m 908834.0 0.0   1   0.0 0.0 908834.0, 908834.0 0.17
BXD39/TyJ m 877059.0 0.0   1   0.0 0.0 877059.0, 877059.0 0.11
BXD40/TyJ m 1026595.0 0.0   1   0.0 0.0 1026595.0, 1026595.0 0.42
BXD42/TyJ m 933788.0 0.0   1   0.0 0.0 933788.0, 933788.0 0.23
BXD5/TyJ m 720700.0 0.0   1   0.0 0.0 720700.0, 720700.0 -0.22
BXD6/TyJ m 871922.0 0.0   1   0.0 0.0 871922.0, 871922.0 0.1
BXD8/TyJ m 850064.0 0.0   1   0.0 0.0 850064.0, 850064.0 0.05
BXD9/TyJ m 965414.0 0.0   1   0.0 0.0 965414.0, 965414.0 0.29
BXH10/TyJ m 670342.0 0.0   1   0.0 0.0 670342.0, 670342.0 -0.33
BXH19/TyJ m 798940.0 0.0   1   0.0 0.0 798940.0, 798940.0 -0.06
BXH20/KccJ m 621497.0 0.0   1   0.0 0.0 621497.0, 621497.0 -0.43
BXH22/KccJ m 598478.0 0.0   1   0.0 0.0 598478.0, 598478.0 -0.48
BXH2/TyJ m 815671.0 0.0   1   0.0 0.0 815671.0, 815671.0 -0.02
BXH4/TyJ m 670539.0 4594.0   2   3248.0 0.00685 667291.0, 673787.0 -0.33
BXH6/TyJ m 684874.0 0.0   1   0.0 0.0 684874.0, 684874.0 -0.3
BXH7/TyJ m 642272.0 0.0   1   0.0 0.0 642272.0, 642272.0 -0.39
BXH8/TyJ m 1036357.0 0.0   1   0.0 0.0 1036357.0, 1036357.0 0.44
BXH9/TyJ m 624776.0 0.0   1   0.0 0.0 624776.0, 624776.0 -0.42
C3H/HeJ m 634164.0 141738.0   2   100224.0 0.224 533940.0, 734388.0 -0.4
C57BL/6J m 996563.0 93726.0   5 41916.0 0.094 871735.0, 1087743.0 0.36
C57L/J m 907944.0 0.0   1   0.0 0.0 907944.0, 907944.0 0.17
C58/J m 708614.0 0.0   1   0.0 0.0 708614.0, 708614.0 -0.25
CAST/EiJ m 508646.0 0.0   1   0.0 0.0 508646.0, 508646.0 -0.67
CBA/J m 622908.0 0.0   1   0.0 0.0 622908.0, 622908.0 -0.43
CE/J m 773358.0 0.0   1   0.0 0.0 773358.0, 773358.0 -0.11
CXB11/HiAJ m 689101.0 134108.0   2   94828.0 0.195 594273.0, 783930.0 -0.29
CXB12/HiAJ m 783869.0 33850.0   2   23935.0 0.0432 759934.0, 807805.0 -0.09
CXB13/HiAJ m 1240084.0 512388.0   3 295827.0 0.413 865219.0, 1823936.0 0.87
CXB1/ByJ m 707863.0 218485.0   3 126142.0 0.309 471008.0, 901526.0 -0.25
CXB2/ByJ m 1243350.0 217536.0   3 125595.0 0.175 1002940.0, 1426596.0 0.88
CXB3/ByJ m 678019.0 251573.0   2   177889.0 0.371 500130.0, 855908.0 -0.31
CXB4/ByJ m 711157.0 81925.0   2   57929.0 0.115 653227.0, 769086.0 -0.24
CXB6/ByJ m 1253835.0 138612.0   3 80028.0 0.111 1142240.0, 1408996.0 0.9
CXB7/ByJ m 1087509.0 245939.0   2   173905.0 0.226 913604.0, 1261414.0 0.55
CXB8/HiAJ m 564834.0 148773.0   3 85894.0 0.263 393645.0, 662849.0 -0.55
CXB9/HiAJ m 690103.0 224396.0   3 129555.0 0.325 439498.0, 872427.0 -0.29
DBA/2J m 614022.0 35903.0   4 17952.0 0.0585 582670.0, 650843.0 -0.45
FVB/NJ m 583466.0 0.0   1   0.0 0.0 583466.0, 583466.0 -0.51
I/LnJ m 1111367.0 0.0   1   0.0 0.0 1111367.0, 1111367.0 0.6
KK/HlJ m 380099.0 0.0   1   0.0 0.0 380099.0, 380099.0 -0.94
LG/J m 785789.0 0.0   1   0.0 0.0 785789.0, 785789.0 -0.09
LP/J m 584098.0 0.0   1   0.0 0.0 584098.0, 584098.0 -0.51
MA/MyJ m 427432.0 0.0   1   0.0 0.0 427432.0, 427432.0 -0.84
NOD/ShiLtJ m 847504.0 0.0   1   0.0 0.0 847504.0, 847504.0 0.05
NON/ShiLtJ m 480533.0 0.0   1   0.0 0.0 480533.0, 480533.0 -0.73
NZW/LacJ m 633532.0 0.0   1   0.0 0.0 633532.0, 633532.0 -0.41
PL/J m 673867.0 0.0   1   0.0 0.0 673867.0, 673867.0 -0.32
RIIIS/J m 1067277.0 0.0   1   0.0 0.0 1067277.0, 1067277.0 0.51
SEA/GnJ m 375019.0 0.0   1   0.0 0.0 375019.0, 375019.0 -0.95
SJL/J m 401740.0 0.0   1   0.0 0.0 401740.0, 401740.0 -0.89
SM/J m 624292.0 0.0   1   0.0 0.0 624292.0, 624292.0 -0.43
SWR/J m 763404.0 0.0   1   0.0 0.0 763404.0, 763404.0 -0.13


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
A/J m 765609.35 137846.3318 1045746.801 485471.899
AXB19b/PgnJ m 540028.9 137846.3318 820166.351 259891.449
AXB24/PgnJ m 645892.35 137846.3318 926029.801 365754.899
BALB/cJ m 886047.8333 112551.0586 1114779.1042 657316.5624
BXA16/PgnJ m 1328330.9 137846.3318 1608468.351 1048193.449
BXD19/TyJ m 903416.0 137846.3318 1183553.451 623278.549
BXD28/TyJ m 809039.3 137846.3318 1089176.751 528901.849
BXH4/TyJ m 670538.9 137846.3318 950676.351 390401.449
C3H/HeJ m 634164.2 137846.3318 914301.651 354026.749
C57BL/6J m 996563.46 87181.6751 1173737.9406 819388.9794
CXB11/HiAJ m 689101.35 137846.3318 969238.801 408963.899
CXB12/HiAJ m 783869.1 137846.3318 1064006.551 503731.649
CXB13/HiAJ m 1240084.0667 112551.0586 1468815.3376 1011352.7958
CXB1/ByJ m 707862.6333 112551.0586 936593.9042 479131.3624
CXB2/ByJ m 1243349.9333 112551.0586 1472081.2042 1014618.6624
CXB3/ByJ m 678018.95 137846.3318 958156.401 397881.499
CXB4/ByJ m 711156.7 137846.3318 991294.151 431019.249
CXB6/ByJ m 1253834.9333 112551.0586 1482566.2042 1025103.6624
CXB7/ByJ m 1087509.1 137846.3318 1367646.551 807371.649
CXB8/HiAJ m 564834.0667 112551.0586 793565.3376 336102.7958
CXB9/HiAJ m 690102.9 112551.0586 918834.1709 461371.6291
DBA/2J m 614022.075 97472.076 812109.1662 415934.9838




  GWAS USING LINEAR MIXED MODELS