Phenotype measure:   HMDPpheno8   carnitine

ID, description, units MPD:50312   carnitine   carnitine (16h fast), relative abundance  
Data set, strains HMDPpheno8   HMDP   106 strains     sex: m     age: 16wks
Procedure metabolite quantification
Ontology mappings

  STRAIN COMPARISON PLOT
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HMDPpheno8 - carnitine (16h fast), relative abundance



  MEASURE SUMMARY
Measure Summary Male
Number of strains tested106 strains
Mean of the strain means4843268   None
Median of the strain means4742816   None
SD of the strain means± 859172
Coefficient of variation (CV)0.177
Min–max range of strain means3384794   –   9911615   None
Mean sample size per strain1.3   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
strain 21 11851132468074.8 564339641336.897 1.8665 0.0512
Residuals 34 10279704978200.7 302344264064.728


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
Select table page:
Strain Sex Mean SD N mice SEM CV Min, Max Z score
129X1/SvJ m 5370734.0 0.0   1   0.0 0.0 5370734.0, 5370734.0 0.61
A/J m 5532335.0 185136.0   2   130911.0 0.0335 5401424.0, 5663246.0 0.8
AKR/J m 4340093.0 0.0   1   0.0 0.0 4340093.0, 4340093.0 -0.59
AXB10/PgnJ m 4395941.0 0.0   1   0.0 0.0 4395941.0, 4395941.0 -0.52
AXB12/PgnJ m 5645351.0 0.0   1   0.0 0.0 5645351.0, 5645351.0 0.93
AXB13/PgnJ m 4668430.0 0.0   1   0.0 0.0 4668430.0, 4668430.0 -0.2
AXB15/PgnJ m 4677956.0 0.0   1   0.0 0.0 4677956.0, 4677956.0 -0.19
AXB19a/PgnJ m 4957523.0 0.0   1   0.0 0.0 4957523.0, 4957523.0 0.13
AXB19b/PgnJ m 4951941.0 23788.0   2   16820.0 0.0048 4935120.0, 4968762.0 0.13
AXB19/PgnJ m 4548647.0 0.0   1   0.0 0.0 4548647.0, 4548647.0 -0.34
AXB1/PgnJ m 6976072.0 0.0   1   0.0 0.0 6976072.0, 6976072.0 2.48
AXB23/PgnJ m 4273918.0 0.0   1   0.0 0.0 4273918.0, 4273918.0 -0.66
AXB24/PgnJ m 4514507.0 693276.0   2   490220.0 0.154 4024286.0, 5004728.0 -0.38
AXB2/PgnJ m 6370610.0 0.0   1   0.0 0.0 6370610.0, 6370610.0 1.78
AXB4/PgnJ m 4813170.0 0.0   1   0.0 0.0 4813170.0, 4813170.0 -0.04
AXB5/PgnJ m 5437498.0 0.0   1   0.0 0.0 5437498.0, 5437498.0 0.69
AXB6/PgnJ m 4722466.0 0.0   1   0.0 0.0 4722466.0, 4722466.0 -0.14
AXB8/PgnJ m 4734160.0 0.0   1   0.0 0.0 4734160.0, 4734160.0 -0.13
BALB/cJ m 5276591.0 370035.0   3 213640.0 0.0701 4920984.0, 5659538.0 0.5
BTBR T+ Itpr3tf/J m 4461573.0 0.0   1   0.0 0.0 4461573.0, 4461573.0 -0.44
BUB/BnJ m 9911615.0 0.0   1   0.0 0.0 9911615.0, 9911615.0 5.9
BXA11/PgnJ m 4879666.0 0.0   1   0.0 0.0 4879666.0, 4879666.0 0.04
BXA12/PgnJ m 4842938.0 0.0   1   0.0 0.0 4842938.0, 4842938.0 0.0
BXA13/PgnJ m 4209676.0 0.0   1   0.0 0.0 4209676.0, 4209676.0 -0.74
BXA14/PgnJ m 3384794.0 0.0   1   0.0 0.0 3384794.0, 3384794.0 -1.7
BXA16/PgnJ m 4616424.0 1097377.0   2   775963.0 0.238 3840462.0, 5392387.0 -0.26
BXA1/PgnJ m 4083770.0 0.0   1   0.0 0.0 4083770.0, 4083770.0 -0.88
BXA24/PgnJ m 4316564.0 0.0   1   0.0 0.0 4316564.0, 4316564.0 -0.61
BXA25/PgnJ m 4723366.0 0.0   1   0.0 0.0 4723366.0, 4723366.0 -0.14
BXA26/PgnJ m 4916148.0 0.0   1   0.0 0.0 4916148.0, 4916148.0 0.08
BXA2/PgnJ m 4599969.0 0.0   1   0.0 0.0 4599969.0, 4599969.0 -0.28
BXA4/PgnJ m 4649739.0 0.0   1   0.0 0.0 4649739.0, 4649739.0 -0.23
BXA7/PgnJ m 4865828.0 0.0   1   0.0 0.0 4865828.0, 4865828.0 0.03
BXA8/PgnJ m 3561950.0 0.0   1   0.0 0.0 3561950.0, 3561950.0 -1.49
BXD11/TyJ m 5298720.0 0.0   1   0.0 0.0 5298720.0, 5298720.0 0.53
BXD12/TyJ m 5488696.0 0.0   1   0.0 0.0 5488696.0, 5488696.0 0.75
BXD13/TyJ m 4307280.0 0.0   1   0.0 0.0 4307280.0, 4307280.0 -0.62
BXD14/TyJ m 4346620.0 0.0   1   0.0 0.0 4346620.0, 4346620.0 -0.58
BXD15/TyJ m 4459008.0 0.0   1   0.0 0.0 4459008.0, 4459008.0 -0.45
BXD18/TyJ m 5223495.0 0.0   1   0.0 0.0 5223495.0, 5223495.0 0.44
BXD19/TyJ m 4118411.0 40854.0   2   28888.0 0.00992 4089523.0, 4147300.0 -0.84
BXD1/TyJ m 5320091.0 0.0   1   0.0 0.0 5320091.0, 5320091.0 0.55
BXD20/TyJ m 4914104.0 0.0   1   0.0 0.0 4914104.0, 4914104.0 0.08
BXD21/TyJ m 5815775.0 0.0   1   0.0 0.0 5815775.0, 5815775.0 1.13
BXD22/TyJ m 4416156.0 0.0   1   0.0 0.0 4416156.0, 4416156.0 -0.5
BXD24/TyJ m 5061610.0 0.0   1   0.0 0.0 5061610.0, 5061610.0 0.25
BXD24/TyJ-Cep290rd16/J m 4644734.0 0.0   1   0.0 0.0 4644734.0, 4644734.0 -0.23
BXD28/TyJ m 4454422.0 313746.0   2   221852.0 0.0704 4232570.0, 4676274.0 -0.45
BXD29-Tlr4lps-2J/J m 4366294.0 0.0   1   0.0 0.0 4366294.0, 4366294.0 -0.56
BXD2/TyJ m 3681864.0 0.0   1   0.0 0.0 3681864.0, 3681864.0 -1.35
BXD32/TyJ m 5223386.0 0.0   1   0.0 0.0 5223386.0, 5223386.0 0.44
BXD33/TyJ m 5026143.0 0.0   1   0.0 0.0 5026143.0, 5026143.0 0.21
BXD34/TyJ m 6066662.0 0.0   1   0.0 0.0 6066662.0, 6066662.0 1.42
BXD36/TyJ m 4200032.0 0.0   1   0.0 0.0 4200032.0, 4200032.0 -0.75
BXD38/TyJ m 5810730.0 0.0   1   0.0 0.0 5810730.0, 5810730.0 1.13
BXD39/TyJ m 4024598.0 0.0   1   0.0 0.0 4024598.0, 4024598.0 -0.95
BXD40/TyJ m 5122116.0 0.0   1   0.0 0.0 5122116.0, 5122116.0 0.32
BXD42/TyJ m 4977592.0 0.0   1   0.0 0.0 4977592.0, 4977592.0 0.16
BXD5/TyJ m 3666454.0 0.0   1   0.0 0.0 3666454.0, 3666454.0 -1.37
BXD6/TyJ m 5270288.0 0.0   1   0.0 0.0 5270288.0, 5270288.0 0.5
BXD8/TyJ m 5251454.0 0.0   1   0.0 0.0 5251454.0, 5251454.0 0.48
BXD9/TyJ m 3391492.0 0.0   1   0.0 0.0 3391492.0, 3391492.0 -1.69
BXH10/TyJ m 4895892.0 0.0   1   0.0 0.0 4895892.0, 4895892.0 0.06
BXH19/TyJ m 4451128.0 0.0   1   0.0 0.0 4451128.0, 4451128.0 -0.46
BXH20/KccJ m 4000693.0 0.0   1   0.0 0.0 4000693.0, 4000693.0 -0.98
BXH22/KccJ m 4129742.0 0.0   1   0.0 0.0 4129742.0, 4129742.0 -0.83
BXH2/TyJ m 4326918.0 0.0   1   0.0 0.0 4326918.0, 4326918.0 -0.6
BXH4/TyJ m 4346572.0 320492.0   2   226622.0 0.0737 4119950.0, 4573194.0 -0.58
BXH6/TyJ m 4627857.0 0.0   1   0.0 0.0 4627857.0, 4627857.0 -0.25
BXH7/TyJ m 5507686.0 0.0   1   0.0 0.0 5507686.0, 5507686.0 0.77
BXH8/TyJ m 3985155.0 0.0   1   0.0 0.0 3985155.0, 3985155.0 -1.0
BXH9/TyJ m 4372728.0 0.0   1   0.0 0.0 4372728.0, 4372728.0 -0.55
C3H/HeJ m 5374607.0 225376.0   2   159365.0 0.0419 5215242.0, 5533972.0 0.62
C57BL/6J m 5270453.0 710534.0   5 317760.0 0.135 4641227.0, 6213220.0 0.5
C57L/J m 6259780.0 0.0   1   0.0 0.0 6259780.0, 6259780.0 1.65
C58/J m 5503016.0 0.0   1   0.0 0.0 5503016.0, 5503016.0 0.77
CAST/EiJ m 4305283.0 0.0   1   0.0 0.0 4305283.0, 4305283.0 -0.63
CBA/J m 5553992.0 0.0   1   0.0 0.0 5553992.0, 5553992.0 0.83
CE/J m 4751471.0 0.0   1   0.0 0.0 4751471.0, 4751471.0 -0.11
CXB11/HiAJ m 4168236.0 416650.0   2   294616.0 0.1 3873620.0, 4462852.0 -0.79
CXB12/HiAJ m 4901712.0 185477.0   2   131152.0 0.0378 4770560.0, 5032864.0 0.07
CXB13/HiAJ m 4905702.0 362384.0   3 209223.0 0.0739 4574015.0, 5292476.0 0.07
CXB1/ByJ m 5065951.0 1391850.0   3 803585.0 0.275 3619838.0, 6396308.0 0.26
CXB2/ByJ m 5002190.0 372302.0   3 214949.0 0.0744 4619909.0, 5363638.0 0.18
CXB3/ByJ m 4226027.0 450032.0   2   318221.0 0.106 3907806.0, 4544248.0 -0.72
CXB4/ByJ m 3984049.0 229915.0   2   162574.0 0.0577 3821475.0, 4146624.0 -1.0
CXB6/ByJ m 5435722.0 491629.0   3 283842.0 0.0904 5015646.0, 5976443.0 0.69
CXB7/ByJ m 3989194.0 224391.0   2   158668.0 0.0562 3830526.0, 4147862.0 -0.99
CXB8/HiAJ m 4447166.0 267164.0   3 154247.0 0.0601 4291469.0, 4755655.0 -0.46
CXB9/HiAJ m 4498333.0 364532.0   3 210463.0 0.081 4080348.0, 4750333.0 -0.4
DBA/2J m 4976356.0 253694.0   4 126847.0 0.051 4755824.0, 5249586.0 0.15
FVB/NJ m 7328432.0 0.0   1   0.0 0.0 7328432.0, 7328432.0 2.89
I/LnJ m 6111328.0 0.0   1   0.0 0.0 6111328.0, 6111328.0 1.48
KK/HlJ m 4372362.0 0.0   1   0.0 0.0 4372362.0, 4372362.0 -0.55
LG/J m 3789914.0 0.0   1   0.0 0.0 3789914.0, 3789914.0 -1.23
LP/J m 4618476.0 0.0   1   0.0 0.0 4618476.0, 4618476.0 -0.26
MA/MyJ m 5166104.0 0.0   1   0.0 0.0 5166104.0, 5166104.0 0.38
NOD/ShiLtJ m 5304178.0 0.0   1   0.0 0.0 5304178.0, 5304178.0 0.54
NON/ShiLtJ m 4772034.0 0.0   1   0.0 0.0 4772034.0, 4772034.0 -0.08
NZW/LacJ m 4002396.0 0.0   1   0.0 0.0 4002396.0, 4002396.0 -0.98
PL/J m 5208809.0 0.0   1   0.0 0.0 5208809.0, 5208809.0 0.43
RIIIS/J m 5156264.0 0.0   1   0.0 0.0 5156264.0, 5156264.0 0.36
SEA/GnJ m 3958402.0 0.0   1   0.0 0.0 3958402.0, 3958402.0 -1.03
SJL/J m 3489881.0 0.0   1   0.0 0.0 3489881.0, 3489881.0 -1.58
SM/J m 5650277.0 0.0   1   0.0 0.0 5650277.0, 5650277.0 0.94
SWR/J m 5013708.0 0.0   1   0.0 0.0 5013708.0, 5013708.0 0.2


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
A/J m 5532334.75 388808.6059 6322488.9045 4742180.5955
AXB19b/PgnJ m 4951941.0 388808.6059 5742095.1545 4161786.8455
AXB24/PgnJ m 4514507.0 388808.6059 5304661.1545 3724352.8455
BALB/cJ m 5276590.6667 317460.8974 5921748.8323 4631432.5011
BXA16/PgnJ m 4616424.4 388808.6059 5406578.5545 3826270.2455
BXD19/TyJ m 4118411.15 388808.6059 4908565.3045 3328256.9955
BXD28/TyJ m 4454422.0 388808.6059 5244576.1545 3664267.8455
BXH4/TyJ m 4346572.5 388808.6059 5136726.6545 3556418.3455
C3H/HeJ m 5374606.75 388808.6059 6164760.9045 4584452.5955
C57BL/6J m 5270453.3 245904.1537 5770190.6662 4770715.9338
CXB11/HiAJ m 4168236.15 388808.6059 4958390.3045 3378081.9955
CXB12/HiAJ m 4901711.75 388808.6059 5691865.9045 4111557.5955
CXB13/HiAJ m 4905702.5 317460.8974 5550860.6656 4260544.3344
CXB1/ByJ m 5065951.1667 317460.8974 5711109.3323 4420793.0011
CXB2/ByJ m 5002189.8333 317460.8974 5647347.9989 4357031.6677
CXB3/ByJ m 4226026.75 388808.6059 5016180.9045 3435872.5955
CXB4/ByJ m 3984049.4 388808.6059 4774203.5545 3193895.2455
CXB6/ByJ m 5435722.0 317460.8974 6080880.1656 4790563.8344
CXB7/ByJ m 3989194.05 388808.6059 4779348.2045 3199039.8955
CXB8/HiAJ m 4447165.6667 317460.8974 5092323.8323 3802007.5011
CXB9/HiAJ m 4498333.2667 317460.8974 5143491.4323 3853175.1011
DBA/2J m 4976356.0 274929.2018 5535079.3609 4417632.6391




  GWAS USING LINEAR MIXED MODELS