Project measure / variable:   HMDPpheno8   carnitine

ID, description, units MPD:50312   carnitine   carnitine (16h fast), relative abundance    
Data set, strains HMDPpheno8   HMDP   106 strains     sex: m     age: 16wks
Procedure metabolite quantification
Ontology mappings


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  STRAIN COMPARISON PLOT
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HMDPpheno8 - carnitine (16h fast), relative abundance

BUB/BnJFVB/NJAXB1/PgnJAXB2/PgnJC57L/JI/LnJBXD34/TyJBXD21/TyJBXD38/TyJSM/JAXB12/PgnJCBA/JA/JBXH7/TyJC58/JBXD12/TyJAXB5/PgnJCXB6/ByJC3H/HeJ129X1/SvJBXD1/TyJNOD/ShiLtJBXD11/TyJBALB/cJC57BL/6JBXD6/TyJBXD8/TyJBXD18/TyJBXD32/TyJPL/JMA/MyJRIIIS/JBXD40/TyJCXB1/ByJBXD24/TyJBXD33/TyJSWR/JCXB2/ByJBXD42/TyJDBA/2JAXB19a/PgnJAXB19b/PgnJBXA26/PgnJBXD20/TyJCXB13/HiAJCXB12/HiAJBXH10/TyJBXA11/PgnJBXA7/PgnJBXA12/PgnJAXB4/PgnJNON/ShiLtJCE/JAXB8/PgnJBXA25/PgnJAXB6/PgnJAXB15/PgnJAXB13/PgnJBXA4/PgnJBXD24/TyJ-Cep290<rd16>/JBXH6/TyJLP/JBXA16/PgnJBXA2/PgnJAXB19/PgnJAXB24/PgnJCXB9/HiAJBTBR T<+> Itpr3<tf>/JBXD15/TyJBXD28/TyJBXH19/TyJCXB8/HiAJBXD22/TyJAXB10/PgnJBXH9/TyJKK/HlJBXD29-Tlr4<lps-2J>/JBXD14/TyJBXH4/TyJAKR/JBXH2/TyJBXA24/PgnJBXD13/TyJCAST/EiJAXB23/PgnJCXB3/ByJBXA13/PgnJBXD36/TyJCXB11/HiAJBXH22/KccJBXD19/TyJBXA1/PgnJBXD39/TyJNZW/LacJBXH20/KccJCXB7/ByJBXH8/TyJCXB4/ByJSEA/GnJLG/JBXD2/TyJBXD5/TyJBXA8/PgnJSJL/JBXD9/TyJBXA14/PgnJ (no units) 4,000,0005,000,0006,000,0007,000,0008,000,0009,000,00010,000,000femalemale


  MEASURE SUMMARY
Measure Summary Male
Number of strains tested106 strains
Mean of the strain means4843268   None
Median of the strain means4742816   None
SD of the strain means± 859172
Coefficient of variation (CV)0.177
Min–max range of strain means3384794   –   9911615   None
Mean sample size per strain1.3   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
strain 21 11851132468074.8 564339641336.897 1.8665 0.0512
Residuals 34 10279704978200.7 302344264064.728


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
Select table page: 1 - 10 / 106 (106)
Strain
Sex
Mean
SD
N mice
SEM
CV
Min, Max
Z score
129X1/SvJ m 5370734.0 0.0   1   0.0 0.0 5370734.0, 5370734.0 0.61
A/J m 5532335.0 185136.0   2   130911.0 0.0335 5401424.0, 5663246.0 0.8
AKR/J m 4340093.0 0.0   1   0.0 0.0 4340093.0, 4340093.0 -0.59
AXB10/PgnJ m 4395941.0 0.0   1   0.0 0.0 4395941.0, 4395941.0 -0.52
AXB12/PgnJ m 5645351.0 0.0   1   0.0 0.0 5645351.0, 5645351.0 0.93
AXB13/PgnJ m 4668430.0 0.0   1   0.0 0.0 4668430.0, 4668430.0 -0.2
AXB15/PgnJ m 4677956.0 0.0   1   0.0 0.0 4677956.0, 4677956.0 -0.19
AXB19a/PgnJ m 4957523.0 0.0   1   0.0 0.0 4957523.0, 4957523.0 0.13
AXB19b/PgnJ m 4951941.0 23788.0   2   16820.0 0.0048 4935120.0, 4968762.0 0.13
AXB19/PgnJ m 4548647.0 0.0   1   0.0 0.0 4548647.0, 4548647.0 -0.34
AXB1/PgnJ m 6976072.0 0.0   1   0.0 0.0 6976072.0, 6976072.0 2.48
AXB23/PgnJ m 4273918.0 0.0   1   0.0 0.0 4273918.0, 4273918.0 -0.66
AXB24/PgnJ m 4514507.0 693276.0   2   490220.0 0.154 4024286.0, 5004728.0 -0.38
AXB2/PgnJ m 6370610.0 0.0   1   0.0 0.0 6370610.0, 6370610.0 1.78
AXB4/PgnJ m 4813170.0 0.0   1   0.0 0.0 4813170.0, 4813170.0 -0.04
AXB5/PgnJ m 5437498.0 0.0   1   0.0 0.0 5437498.0, 5437498.0 0.69
AXB6/PgnJ m 4722466.0 0.0   1   0.0 0.0 4722466.0, 4722466.0 -0.14
AXB8/PgnJ m 4734160.0 0.0   1   0.0 0.0 4734160.0, 4734160.0 -0.13
BALB/cJ m 5276591.0 370035.0   3 213640.0 0.0701 4920984.0, 5659538.0 0.5
BTBR T+ Itpr3tf/J m 4461573.0 0.0   1   0.0 0.0 4461573.0, 4461573.0 -0.44
BUB/BnJ m 9911615.0 0.0   1   0.0 0.0 9911615.0, 9911615.0 5.9
BXA11/PgnJ m 4879666.0 0.0   1   0.0 0.0 4879666.0, 4879666.0 0.04
BXA12/PgnJ m 4842938.0 0.0   1   0.0 0.0 4842938.0, 4842938.0 0.0
BXA13/PgnJ m 4209676.0 0.0   1   0.0 0.0 4209676.0, 4209676.0 -0.74
BXA14/PgnJ m 3384794.0 0.0   1   0.0 0.0 3384794.0, 3384794.0 -1.7
BXA16/PgnJ m 4616424.0 1097377.0   2   775963.0 0.238 3840462.0, 5392387.0 -0.26
BXA1/PgnJ m 4083770.0 0.0   1   0.0 0.0 4083770.0, 4083770.0 -0.88
BXA24/PgnJ m 4316564.0 0.0   1   0.0 0.0 4316564.0, 4316564.0 -0.61
BXA25/PgnJ m 4723366.0 0.0   1   0.0 0.0 4723366.0, 4723366.0 -0.14
BXA26/PgnJ m 4916148.0 0.0   1   0.0 0.0 4916148.0, 4916148.0 0.08
BXA2/PgnJ m 4599969.0 0.0   1   0.0 0.0 4599969.0, 4599969.0 -0.28
BXA4/PgnJ m 4649739.0 0.0   1   0.0 0.0 4649739.0, 4649739.0 -0.23
BXA7/PgnJ m 4865828.0 0.0   1   0.0 0.0 4865828.0, 4865828.0 0.03
BXA8/PgnJ m 3561950.0 0.0   1   0.0 0.0 3561950.0, 3561950.0 -1.49
BXD11/TyJ m 5298720.0 0.0   1   0.0 0.0 5298720.0, 5298720.0 0.53
BXD12/TyJ m 5488696.0 0.0   1   0.0 0.0 5488696.0, 5488696.0 0.75
BXD13/TyJ m 4307280.0 0.0   1   0.0 0.0 4307280.0, 4307280.0 -0.62
BXD14/TyJ m 4346620.0 0.0   1   0.0 0.0 4346620.0, 4346620.0 -0.58
BXD15/TyJ m 4459008.0 0.0   1   0.0 0.0 4459008.0, 4459008.0 -0.45
BXD18/TyJ m 5223495.0 0.0   1   0.0 0.0 5223495.0, 5223495.0 0.44
BXD19/TyJ m 4118411.0 40854.0   2   28888.0 0.00992 4089523.0, 4147300.0 -0.84
BXD1/TyJ m 5320091.0 0.0   1   0.0 0.0 5320091.0, 5320091.0 0.55
BXD20/TyJ m 4914104.0 0.0   1   0.0 0.0 4914104.0, 4914104.0 0.08
BXD21/TyJ m 5815775.0 0.0   1   0.0 0.0 5815775.0, 5815775.0 1.13
BXD22/TyJ m 4416156.0 0.0   1   0.0 0.0 4416156.0, 4416156.0 -0.5
BXD24/TyJ m 5061610.0 0.0   1   0.0 0.0 5061610.0, 5061610.0 0.25
BXD24/TyJ-Cep290rd16/J m 4644734.0 0.0   1   0.0 0.0 4644734.0, 4644734.0 -0.23
BXD28/TyJ m 4454422.0 313746.0   2   221852.0 0.0704 4232570.0, 4676274.0 -0.45
BXD29-Tlr4lps-2J/J m 4366294.0 0.0   1   0.0 0.0 4366294.0, 4366294.0 -0.56
BXD2/TyJ m 3681864.0 0.0   1   0.0 0.0 3681864.0, 3681864.0 -1.35
BXD32/TyJ m 5223386.0 0.0   1   0.0 0.0 5223386.0, 5223386.0 0.44
BXD33/TyJ m 5026143.0 0.0   1   0.0 0.0 5026143.0, 5026143.0 0.21
BXD34/TyJ m 6066662.0 0.0   1   0.0 0.0 6066662.0, 6066662.0 1.42
BXD36/TyJ m 4200032.0 0.0   1   0.0 0.0 4200032.0, 4200032.0 -0.75
BXD38/TyJ m 5810730.0 0.0   1   0.0 0.0 5810730.0, 5810730.0 1.13
BXD39/TyJ m 4024598.0 0.0   1   0.0 0.0 4024598.0, 4024598.0 -0.95
BXD40/TyJ m 5122116.0 0.0   1   0.0 0.0 5122116.0, 5122116.0 0.32
BXD42/TyJ m 4977592.0 0.0   1   0.0 0.0 4977592.0, 4977592.0 0.16
BXD5/TyJ m 3666454.0 0.0   1   0.0 0.0 3666454.0, 3666454.0 -1.37
BXD6/TyJ m 5270288.0 0.0   1   0.0 0.0 5270288.0, 5270288.0 0.5
BXD8/TyJ m 5251454.0 0.0   1   0.0 0.0 5251454.0, 5251454.0 0.48
BXD9/TyJ m 3391492.0 0.0   1   0.0 0.0 3391492.0, 3391492.0 -1.69
BXH10/TyJ m 4895892.0 0.0   1   0.0 0.0 4895892.0, 4895892.0 0.06
BXH19/TyJ m 4451128.0 0.0   1   0.0 0.0 4451128.0, 4451128.0 -0.46
BXH20/KccJ m 4000693.0 0.0   1   0.0 0.0 4000693.0, 4000693.0 -0.98
BXH22/KccJ m 4129742.0 0.0   1   0.0 0.0 4129742.0, 4129742.0 -0.83
BXH2/TyJ m 4326918.0 0.0   1   0.0 0.0 4326918.0, 4326918.0 -0.6
BXH4/TyJ m 4346572.0 320492.0   2   226622.0 0.0737 4119950.0, 4573194.0 -0.58
BXH6/TyJ m 4627857.0 0.0   1   0.0 0.0 4627857.0, 4627857.0 -0.25
BXH7/TyJ m 5507686.0 0.0   1   0.0 0.0 5507686.0, 5507686.0 0.77
BXH8/TyJ m 3985155.0 0.0   1   0.0 0.0 3985155.0, 3985155.0 -1.0
BXH9/TyJ m 4372728.0 0.0   1   0.0 0.0 4372728.0, 4372728.0 -0.55
C3H/HeJ m 5374607.0 225376.0   2   159365.0 0.0419 5215242.0, 5533972.0 0.62
C57BL/6J m 5270453.0 710534.0   5 317760.0 0.135 4641227.0, 6213220.0 0.5
C57L/J m 6259780.0 0.0   1   0.0 0.0 6259780.0, 6259780.0 1.65
C58/J m 5503016.0 0.0   1   0.0 0.0 5503016.0, 5503016.0 0.77
CAST/EiJ m 4305283.0 0.0   1   0.0 0.0 4305283.0, 4305283.0 -0.63
CBA/J m 5553992.0 0.0   1   0.0 0.0 5553992.0, 5553992.0 0.83
CE/J m 4751471.0 0.0   1   0.0 0.0 4751471.0, 4751471.0 -0.11
CXB11/HiAJ m 4168236.0 416650.0   2   294616.0 0.1 3873620.0, 4462852.0 -0.79
CXB12/HiAJ m 4901712.0 185477.0   2   131152.0 0.0378 4770560.0, 5032864.0 0.07
CXB13/HiAJ m 4905702.0 362384.0   3 209223.0 0.0739 4574015.0, 5292476.0 0.07
CXB1/ByJ m 5065951.0 1391850.0   3 803585.0 0.275 3619838.0, 6396308.0 0.26
CXB2/ByJ m 5002190.0 372302.0   3 214949.0 0.0744 4619909.0, 5363638.0 0.18
CXB3/ByJ m 4226027.0 450032.0   2   318221.0 0.106 3907806.0, 4544248.0 -0.72
CXB4/ByJ m 3984049.0 229915.0   2   162574.0 0.0577 3821475.0, 4146624.0 -1.0
CXB6/ByJ m 5435722.0 491629.0   3 283842.0 0.0904 5015646.0, 5976443.0 0.69
CXB7/ByJ m 3989194.0 224391.0   2   158668.0 0.0562 3830526.0, 4147862.0 -0.99
CXB8/HiAJ m 4447166.0 267164.0   3 154247.0 0.0601 4291469.0, 4755655.0 -0.46
CXB9/HiAJ m 4498333.0 364532.0   3 210463.0 0.081 4080348.0, 4750333.0 -0.4
DBA/2J m 4976356.0 253694.0   4 126847.0 0.051 4755824.0, 5249586.0 0.15
FVB/NJ m 7328432.0 0.0   1   0.0 0.0 7328432.0, 7328432.0 2.89
I/LnJ m 6111328.0 0.0   1   0.0 0.0 6111328.0, 6111328.0 1.48
KK/HlJ m 4372362.0 0.0   1   0.0 0.0 4372362.0, 4372362.0 -0.55
LG/J m 3789914.0 0.0   1   0.0 0.0 3789914.0, 3789914.0 -1.23
LP/J m 4618476.0 0.0   1   0.0 0.0 4618476.0, 4618476.0 -0.26
MA/MyJ m 5166104.0 0.0   1   0.0 0.0 5166104.0, 5166104.0 0.38
NOD/ShiLtJ m 5304178.0 0.0   1   0.0 0.0 5304178.0, 5304178.0 0.54
NON/ShiLtJ m 4772034.0 0.0   1   0.0 0.0 4772034.0, 4772034.0 -0.08
NZW/LacJ m 4002396.0 0.0   1   0.0 0.0 4002396.0, 4002396.0 -0.98
PL/J m 5208809.0 0.0   1   0.0 0.0 5208809.0, 5208809.0 0.43
RIIIS/J m 5156264.0 0.0   1   0.0 0.0 5156264.0, 5156264.0 0.36
SEA/GnJ m 3958402.0 0.0   1   0.0 0.0 3958402.0, 3958402.0 -1.03
SJL/J m 3489881.0 0.0   1   0.0 0.0 3489881.0, 3489881.0 -1.58
SM/J m 5650277.0 0.0   1   0.0 0.0 5650277.0, 5650277.0 0.94
SWR/J m 5013708.0 0.0   1   0.0 0.0 5013708.0, 5013708.0 0.2


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
A/J m 5532334.75 388808.6059 6322488.9045 4742180.5955
AXB19b/PgnJ m 4951941.0 388808.6059 5742095.1545 4161786.8455
AXB24/PgnJ m 4514507.0 388808.6059 5304661.1545 3724352.8455
BALB/cJ m 5276590.6667 317460.8974 5921748.8323 4631432.5011
BXA16/PgnJ m 4616424.4 388808.6059 5406578.5545 3826270.2455
BXD19/TyJ m 4118411.15 388808.6059 4908565.3045 3328256.9955
BXD28/TyJ m 4454422.0 388808.6059 5244576.1545 3664267.8455
BXH4/TyJ m 4346572.5 388808.6059 5136726.6545 3556418.3455
C3H/HeJ m 5374606.75 388808.6059 6164760.9045 4584452.5955
C57BL/6J m 5270453.3 245904.1537 5770190.6662 4770715.9338
CXB11/HiAJ m 4168236.15 388808.6059 4958390.3045 3378081.9955
CXB12/HiAJ m 4901711.75 388808.6059 5691865.9045 4111557.5955
CXB13/HiAJ m 4905702.5 317460.8974 5550860.6656 4260544.3344
CXB1/ByJ m 5065951.1667 317460.8974 5711109.3323 4420793.0011
CXB2/ByJ m 5002189.8333 317460.8974 5647347.9989 4357031.6677
CXB3/ByJ m 4226026.75 388808.6059 5016180.9045 3435872.5955
CXB4/ByJ m 3984049.4 388808.6059 4774203.5545 3193895.2455
CXB6/ByJ m 5435722.0 317460.8974 6080880.1656 4790563.8344
CXB7/ByJ m 3989194.05 388808.6059 4779348.2045 3199039.8955
CXB8/HiAJ m 4447165.6667 317460.8974 5092323.8323 3802007.5011
CXB9/HiAJ m 4498333.2667 317460.8974 5143491.4323 3853175.1011
DBA/2J m 4976356.0 274929.2018 5535079.3609 4417632.6391




  GWAS USING LINEAR MIXED MODELS

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