Project measure / variable:   HMDPpheno8   ursodeoxycholate

ID, description, units MPD:50310   ursodeoxycholate   ursodeoxycholate (16h fast), relative abundance    
Data set, strains HMDPpheno8   HMDP   106 strains     sex: m     age: 16wks
Procedure metabolite quantification
Ontology mappings


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  STRAIN COMPARISON PLOT
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HMDPpheno8 - ursodeoxycholate (16h fast), relative abundance

BXH9/TyJBALB/cJNON/ShiLtJBXD11/TyJLG/JMA/MyJBXD34/TyJBXD38/TyJBXA8/PgnJC3H/HeJBXD19/TyJBXD13/TyJLP/JBXH19/TyJKK/HlJDBA/2JAXB8/PgnJSM/JCXB1/ByJBXH8/TyJBXH6/TyJAKR/JBXD9/TyJPL/JAXB19b/PgnJI/LnJBXA14/PgnJCXB13/HiAJBXD36/TyJCXB7/ByJBXA13/PgnJC57BL/6JAXB2/PgnJAXB19/PgnJCXB3/ByJNZW/LacJA/JAXB13/PgnJBXA11/PgnJCXB4/ByJAXB19a/PgnJAXB5/PgnJBXA7/PgnJCBA/JBXD14/TyJBXD5/TyJBXH2/TyJBXA25/PgnJBTBR T<+> Itpr3<tf>/JCXB8/HiAJCAST/EiJBXH7/TyJSJL/JBXH4/TyJCXB9/HiAJBXD33/TyJBXD6/TyJCXB12/HiAJSEA/GnJBXH10/TyJBXD24/TyJ-Cep290<rd16>/JBXD28/TyJAXB12/PgnJAXB6/PgnJAXB23/PgnJRIIIS/JBUB/BnJSWR/JCE/JBXD2/TyJBXD39/TyJBXD29-Tlr4<lps-2J>/JBXA16/PgnJBXA2/PgnJBXD20/TyJBXH20/KccJBXD21/TyJAXB4/PgnJBXA24/PgnJBXD24/TyJAXB24/PgnJBXD32/TyJCXB6/ByJBXD1/TyJAXB10/PgnJAXB1/PgnJBXH22/KccJCXB11/HiAJBXA26/PgnJBXD15/TyJNOD/ShiLtJBXD8/TyJFVB/NJC58/JBXA12/PgnJBXD12/TyJBXD40/TyJBXD18/TyJBXA1/PgnJBXD42/TyJ129X1/SvJCXB2/ByJBXD22/TyJAXB15/PgnJC57L/JBXA4/PgnJ (no units) 050,000100,000150,000200,000250,000300,000350,000400,000femalemale


  MEASURE SUMMARY
Measure Summary Male
Number of strains tested106 strains
Mean of the strain means115879   None
Median of the strain means97320   None
SD of the strain means± 66778
Coefficient of variation (CV)0.576
Min–max range of strain means17672   –   369294   None
Mean sample size per strain1.3   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
strain 21 226456091561.25 10783623407.6786 3.1605 0.0017
Residuals 32 109182601855.122 3411956307.9726


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
Select table page: 1 - 10 / 106 (106)
Strain
Sex
Mean
SD
N mice
SEM
CV
Min, Max
Z score
129X1/SvJ m 42207.0 0.0   1   0.0 0.0 42207.0, 42207.0 -1.1
A/J m 126088.0 86595.0   2   61232.0 0.687 64856.0, 187320.0 0.15
AKR/J m 155679.0 0.0   1   0.0 0.0 155679.0, 155679.0 0.6
AXB10/PgnJ m 65191.0 0.0   1   0.0 0.0 65191.0, 65191.0 -0.76
AXB12/PgnJ m 88197.0 0.0   1   0.0 0.0 88197.0, 88197.0 -0.41
AXB13/PgnJ m 124090.0 0.0   1   0.0 0.0 124090.0, 124090.0 0.12
AXB15/PgnJ m 30690.0 0.0   1   0.0 0.0 30690.0, 30690.0 -1.28
AXB19a/PgnJ m 115400.0 0.0   1   0.0 0.0 115400.0, 115400.0 -0.01
AXB19b/PgnJ m 151756.0 62198.0   2   43980.0 0.41 107776.0, 195737.0 0.54
AXB19/PgnJ m 129822.0 0.0   1   0.0 0.0 129822.0, 129822.0 0.21
AXB1/PgnJ m 63226.0 0.0   1   0.0 0.0 63226.0, 63226.0 -0.79
AXB23/PgnJ m 86865.0 0.0   1   0.0 0.0 86865.0, 86865.0 -0.43
AXB24/PgnJ m 68289.0 19065.0   2   13481.0 0.279 54808.0, 81770.0 -0.71
AXB2/PgnJ m 129940.0 0.0   1   0.0 0.0 129940.0, 129940.0 0.21
AXB4/PgnJ m 74410.0 0.0   1   0.0 0.0 74410.0, 74410.0 -0.62
AXB5/PgnJ m 112584.0 0.0   1   0.0 0.0 112584.0, 112584.0 -0.05
AXB6/PgnJ m 88073.0 0.0   1   0.0 0.0 88073.0, 88073.0 -0.42
AXB8/PgnJ m 169569.0 0.0   1   0.0 0.0 169569.0, 169569.0 0.8
BALB/cJ m 330500.0 105430.0   3 60870.0 0.319 214258.0, 419948.0 3.21
BTBR T+ Itpr3tf/J m 102948.0 0.0   1   0.0 0.0 102948.0, 102948.0 -0.19
BUB/BnJ m 83974.0 0.0   1   0.0 0.0 83974.0, 83974.0 -0.48
BXA11/PgnJ m 121872.0 0.0   1   0.0 0.0 121872.0, 121872.0 0.09
BXA12/PgnJ m 52735.0 0.0   1   0.0 0.0 52735.0, 52735.0 -0.95
BXA13/PgnJ m 131765.0 0.0   1   0.0 0.0 131765.0, 131765.0 0.24
BXA14/PgnJ m 138905.0 0.0   1   0.0 0.0 138905.0, 138905.0 0.34
BXA16/PgnJ m 77868.0 66237.0   2   46837.0 0.851 31032.0, 124705.0 -0.57
BXA1/PgnJ m 44824.0 0.0   1   0.0 0.0 44824.0, 44824.0 -1.06
BXA24/PgnJ m 73430.0 0.0   1   0.0 0.0 73430.0, 73430.0 -0.64
BXA25/PgnJ m 103480.0 0.0   1   0.0 0.0 103480.0, 103480.0 -0.19
BXA26/PgnJ m 62828.0 0.0   1   0.0 0.0 62828.0, 62828.0 -0.79
BXA2/PgnJ m 77296.0 0.0   1   0.0 0.0 77296.0, 77296.0 -0.58
BXA4/PgnJ m 17672.0 0.0   1   0.0 0.0 17672.0, 17672.0 -1.47
BXA7/PgnJ m 109178.0 0.0   1   0.0 0.0 109178.0, 109178.0 -0.1
BXA8/PgnJ m 216644.0 0.0   1   0.0 0.0 216644.0, 216644.0 1.51
BXD11/TyJ m 282529.0 0.0   1   0.0 0.0 282529.0, 282529.0 2.5
BXD12/TyJ m 52300.0 0.0   1   0.0 0.0 52300.0, 52300.0 -0.95
BXD13/TyJ m 202909.0 0.0   1   0.0 0.0 202909.0, 202909.0 1.3
BXD14/TyJ m 104011.0 0.0   1   0.0 0.0 104011.0, 104011.0 -0.18
BXD15/TyJ m 62676.0 0.0   1   0.0 0.0 62676.0, 62676.0 -0.8
BXD18/TyJ m 47839.0 0.0   1   0.0 0.0 47839.0, 47839.0 -1.02
BXD19/TyJ m 208722.0 100042.0   2   70740.0 0.479 137982.0, 279463.0 1.39
BXD1/TyJ m 65255.0 0.0   1   0.0 0.0 65255.0, 65255.0 -0.76
BXD20/TyJ m 76129.0 0.0   1   0.0 0.0 76129.0, 76129.0 -0.6
BXD21/TyJ m 74696.0 0.0   1   0.0 0.0 74696.0, 74696.0 -0.62
BXD22/TyJ m 39009.0 0.0   1   0.0 0.0 39009.0, 39009.0 -1.15
BXD24/TyJ m 68549.0 0.0   1   0.0 0.0 68549.0, 68549.0 -0.71
BXD24/TyJ-Cep290rd16/J m 90845.0 0.0   1   0.0 0.0 90845.0, 90845.0 -0.37
BXD28/TyJ m 89617.0 20856.0   2   14747.0 0.233 74870.0, 104364.0 -0.39
BXD29-Tlr4lps-2J/J m 78836.0 0.0   1   0.0 0.0 78836.0, 78836.0 -0.55
BXD2/TyJ m 79296.0 0.0   1   0.0 0.0 79296.0, 79296.0 -0.55
BXD32/TyJ m 66714.0 0.0   1   0.0 0.0 66714.0, 66714.0 -0.74
BXD33/TyJ m 94300.0 0.0   1   0.0 0.0 94300.0, 94300.0 -0.32
BXD34/TyJ m 230284.0 0.0   1   0.0 0.0 230284.0, 230284.0 1.71
BXD36/TyJ m 138320.0 0.0   1   0.0 0.0 138320.0, 138320.0 0.34
BXD38/TyJ m 222089.0 0.0   1   0.0 0.0 222089.0, 222089.0 1.59
BXD39/TyJ m 78974.0 0.0   1   0.0 0.0 78974.0, 78974.0 -0.55
BXD40/TyJ m 50092.0 0.0   1   0.0 0.0 50092.0, 50092.0 -0.99
BXD42/TyJ m 44288.0 0.0   1   0.0 0.0 44288.0, 44288.0 -1.07
BXD5/TyJ m 103656.0 0.0   1   0.0 0.0 103656.0, 103656.0 -0.18
BXD6/TyJ m 94038.0 0.0   1   0.0 0.0 94038.0, 94038.0 -0.33
BXD8/TyJ m 58983.0 0.0   1   0.0 0.0 58983.0, 58983.0 -0.85
BXD9/TyJ m 155552.0 0.0   1   0.0 0.0 155552.0, 155552.0 0.59
BXH10/TyJ m 91591.0 0.0   1   0.0 0.0 91591.0, 91591.0 -0.36
BXH19/TyJ m 196972.0 0.0   1   0.0 0.0 196972.0, 196972.0 1.21
BXH20/KccJ m 75511.0 0.0   1   0.0 0.0 75511.0, 75511.0 -0.6
BXH22/KccJ m 63032.0 0.0   1   0.0 0.0 63032.0, 63032.0 -0.79
BXH2/TyJ m 103480.0 0.0   1   0.0 0.0 103480.0, 103480.0 -0.19
BXH4/TyJ m 96113.0 102532.0   2   72501.0 1.07 23611.0, 168614.0 -0.3
BXH6/TyJ m 158469.0 0.0   1   0.0 0.0 158469.0, 158469.0 0.64
BXH7/TyJ m 100886.0 0.0   1   0.0 0.0 100886.0, 100886.0 -0.22
BXH8/TyJ m 159262.0 0.0   1   0.0 0.0 159262.0, 159262.0 0.65
BXH9/TyJ m 369294.0 0.0   1   0.0 0.0 369294.0, 369294.0 3.79
C3H/HeJ m 215961.0 132619.0   2   93776.0 0.614 122185.0, 309737.0 1.5
C57BL/6J m 131140.0 46423.0   5 20761.0 0.354 91996.0, 207701.0 0.23
C57L/J m 21093.0 0.0   1   0.0 0.0 21093.0, 21093.0 -1.42
C58/J m 53126.0 0.0   1   0.0 0.0 53126.0, 53126.0 -0.94
CAST/EiJ m 101584.0 0.0   1   0.0 0.0 101584.0, 101584.0 -0.21
CBA/J m 108918.0 0.0   1   0.0 0.0 108918.0, 108918.0 -0.1
CE/J m 79752.0 0.0   1   0.0 0.0 79752.0, 79752.0 -0.54
CXB11/HiAJ m 62873.0 11412.0   2   8070.0 0.182 54804.0, 70943.0 -0.79
CXB12/HiAJ m 92652.0 41776.0   2   29540.0 0.451 63112.0, 122192.0 -0.35
CXB13/HiAJ m 138672.0 46278.0   2   32724.0 0.334 105949.0, 171396.0 0.34
CXB1/ByJ m 162543.0 20846.0   3 12036.0 0.128 146106.0, 185992.0 0.7
CXB2/ByJ m 39019.0 7063.0   2   4994.0 0.181 34025.0, 44013.0 -1.15
CXB3/ByJ m 129651.0 18679.0   2   13208.0 0.144 116442.0, 142859.0 0.21
CXB4/ByJ m 120490.0 58772.0   2   41558.0 0.488 78932.0, 162048.0 0.07
CXB6/ByJ m 65735.0 42510.0   3 24543.0 0.647 19591.0, 103303.0 -0.75
CXB7/ByJ m 133735.0 39120.0   2   27662.0 0.293 106073.0, 161397.0 0.27
CXB8/HiAJ m 102548.0 34373.0   3 19845.0 0.335 63336.0, 127476.0 -0.2
CXB9/HiAJ m 94344.0 19923.0   3 11503.0 0.211 77784.0, 116454.0 -0.32
DBA/2J m 177371.0 47004.0   4 23502.0 0.265 111489.0, 219145.0 0.92
FVB/NJ m 54714.0 0.0   1   0.0 0.0 54714.0, 54714.0 -0.92
I/LnJ m 148632.0 0.0   1   0.0 0.0 148632.0, 148632.0 0.49
KK/HlJ m 195845.0 0.0   1   0.0 0.0 195845.0, 195845.0 1.2
LG/J m 268126.0 0.0   1   0.0 0.0 268126.0, 268126.0 2.28
LP/J m 200908.0 0.0   1   0.0 0.0 200908.0, 200908.0 1.27
MA/MyJ m 257185.0 0.0   1   0.0 0.0 257185.0, 257185.0 2.12
NOD/ShiLtJ m 62630.0 0.0   1   0.0 0.0 62630.0, 62630.0 -0.8
NON/ShiLtJ m 314643.0 0.0   1   0.0 0.0 314643.0, 314643.0 2.98
NZW/LacJ m 126930.0 0.0   1   0.0 0.0 126930.0, 126930.0 0.17
PL/J m 152755.0 0.0   1   0.0 0.0 152755.0, 152755.0 0.55
RIIIS/J m 85562.0 0.0   1   0.0 0.0 85562.0, 85562.0 -0.45
SEA/GnJ m 92034.0 0.0   1   0.0 0.0 92034.0, 92034.0 -0.36
SJL/J m 98527.0 0.0   1   0.0 0.0 98527.0, 98527.0 -0.26
SM/J m 166604.0 0.0   1   0.0 0.0 166604.0, 166604.0 0.76
SWR/J m 83803.0 0.0   1   0.0 0.0 83803.0, 83803.0 -0.48


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
A/J m 126087.9 41303.4884 210220.3527 41955.4473
AXB19b/PgnJ m 151756.15 41303.4884 235888.6027 67623.6973
AXB24/PgnJ m 68289.1 41303.4884 152421.5527 0.0
BALB/cJ m 330499.6667 33724.1571 399193.5267 261805.8067
BXA16/PgnJ m 77868.2 41303.4884 162000.6527 0.0
BXD19/TyJ m 208722.2 41303.4884 292854.6527 124589.7473
BXD28/TyJ m 89616.95 41303.4884 173749.4027 5484.4973
BXH4/TyJ m 96112.75 41303.4884 180245.2027 11980.2973
C3H/HeJ m 215961.3 41303.4884 300093.7527 131828.8473
C57BL/6J m 131140.5 26122.6197 184350.5351 77930.4649
CXB11/HiAJ m 62873.1 41303.4884 147005.5527 0.0
CXB12/HiAJ m 92652.05 41303.4884 176784.5027 8519.5973
CXB13/HiAJ m 138672.4 41303.4884 222804.8527 54539.9473
CXB1/ByJ m 162543.3 33724.1571 231237.16 93849.44
CXB2/ByJ m 39018.65 41303.4884 123151.1027 0.0
CXB3/ByJ m 129650.6 41303.4884 213783.0527 45518.1473
CXB4/ByJ m 120490.15 41303.4884 204622.6027 36357.6973
CXB6/ByJ m 65735.1333 33724.1571 134428.9933 0.0
CXB7/ByJ m 133735.05 41303.4884 217867.5027 49602.5973
CXB8/HiAJ m 102547.8 33724.1571 171241.66 33853.94
CXB9/HiAJ m 94344.3667 33724.1571 163038.2267 25650.5067
DBA/2J m 177371.225 29205.9767 236861.8528 117880.5972




  GWAS USING LINEAR MIXED MODELS

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