Phenotype measure:   HMDPpheno8   taurodeoxycholate

ID, description, units MPD:50309   taurodeoxycholate   taurodeoxycholate (16h fast), relative abundance  
Data set, strains HMDPpheno8   HMDP   105 strains     sex: m     age: 16wks
Procedure metabolite quantification
Ontology mappings

  STRAIN COMPARISON PLOT
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HMDPpheno8 - taurodeoxycholate (16h fast), relative abundance



  MEASURE SUMMARY
Measure Summary Male
Number of strains tested105 strains
Mean of the strain means551943   None
Median of the strain means437846   None
SD of the strain means± 470480
Coefficient of variation (CV)0.852
Min–max range of strain means34669   –   3010188   None
Mean sample size per strain1.3   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
strain 21 2163576588189.84 103027456580.469 1.124 0.3717
Residuals 34 3116556604260.8 91663429537.0823


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
129X1/SvJ m 82864.0 0.0   1   0.0 0.0 82864.0, 82864.0 -1.0
A/J m 386787.0 340639.0   2   240868.0 0.881 145919.0, 627655.0 -0.35
AKR/J m 681345.0 0.0   1   0.0 0.0 681345.0, 681345.0 0.28
AXB10/PgnJ m 466718.0 0.0   1   0.0 0.0 466718.0, 466718.0 -0.18
AXB12/PgnJ m 932521.0 0.0   1   0.0 0.0 932521.0, 932521.0 0.81
AXB13/PgnJ m 609663.0 0.0   1   0.0 0.0 609663.0, 609663.0 0.12
AXB15/PgnJ m 148023.0 0.0   1   0.0 0.0 148023.0, 148023.0 -0.86
AXB19a/PgnJ m 216733.0 0.0   1   0.0 0.0 216733.0, 216733.0 -0.71
AXB19b/PgnJ m 373915.0 183769.0   2   129944.0 0.491 243971.0, 503859.0 -0.38
AXB19/PgnJ m 838049.0 0.0   1   0.0 0.0 838049.0, 838049.0 0.61
AXB1/PgnJ m 820500.0 0.0   1   0.0 0.0 820500.0, 820500.0 0.57
AXB23/PgnJ m 264684.0 0.0   1   0.0 0.0 264684.0, 264684.0 -0.61
AXB24/PgnJ m 275785.0 43621.0   2   30845.0 0.158 244940.0, 306630.0 -0.59
AXB2/PgnJ m 624704.0 0.0   1   0.0 0.0 624704.0, 624704.0 0.15
AXB4/PgnJ m 281989.0 0.0   1   0.0 0.0 281989.0, 281989.0 -0.57
AXB5/PgnJ m 499556.0 0.0   1   0.0 0.0 499556.0, 499556.0 -0.11
AXB6/PgnJ m 533290.0 0.0   1   0.0 0.0 533290.0, 533290.0 -0.04
AXB8/PgnJ m 257711.0 0.0   1   0.0 0.0 257711.0, 257711.0 -0.63
BALB/cJ m 716892.0 559831.0   3 323219.0 0.781 311401.0, 1355635.0 0.35
BTBR T+ Itpr3tf/J m 189631.0 0.0   1   0.0 0.0 189631.0, 189631.0 -0.77
BUB/BnJ m 437846.0 0.0   1   0.0 0.0 437846.0, 437846.0 -0.24
BXA11/PgnJ m 315295.0 0.0   1   0.0 0.0 315295.0, 315295.0 -0.5
BXA12/PgnJ m 177419.0 0.0   1   0.0 0.0 177419.0, 177419.0 -0.8
BXA13/PgnJ m 230176.0 0.0   1   0.0 0.0 230176.0, 230176.0 -0.68
BXA16/PgnJ m 710640.0 258761.0   2   182972.0 0.364 527668.0, 893611.0 0.34
BXA1/PgnJ m 624989.0 0.0   1   0.0 0.0 624989.0, 624989.0 0.16
BXA24/PgnJ m 789956.0 0.0   1   0.0 0.0 789956.0, 789956.0 0.51
BXA25/PgnJ m 255308.0 0.0   1   0.0 0.0 255308.0, 255308.0 -0.63
BXA26/PgnJ m 553568.0 0.0   1   0.0 0.0 553568.0, 553568.0 0.0
BXA2/PgnJ m 683917.0 0.0   1   0.0 0.0 683917.0, 683917.0 0.28
BXA4/PgnJ m 278986.0 0.0   1   0.0 0.0 278986.0, 278986.0 -0.58
BXA7/PgnJ m 597720.0 0.0   1   0.0 0.0 597720.0, 597720.0 0.1
BXA8/PgnJ m 1775121.0 0.0   1   0.0 0.0 1775121.0, 1775121.0 2.6
BXD11/TyJ m 246945.0 0.0   1   0.0 0.0 246945.0, 246945.0 -0.65
BXD12/TyJ m 190431.0 0.0   1   0.0 0.0 190431.0, 190431.0 -0.77
BXD13/TyJ m 76220.0 0.0   1   0.0 0.0 76220.0, 76220.0 -1.01
BXD14/TyJ m 491125.0 0.0   1   0.0 0.0 491125.0, 491125.0 -0.13
BXD15/TyJ m 531468.0 0.0   1   0.0 0.0 531468.0, 531468.0 -0.04
BXD18/TyJ m 72985.0 0.0   1   0.0 0.0 72985.0, 72985.0 -1.02
BXD19/TyJ m 934772.0 707382.0   2   500194.0 0.757 434578.0, 1434966.0 0.81
BXD1/TyJ m 260925.0 0.0   1   0.0 0.0 260925.0, 260925.0 -0.62
BXD20/TyJ m 204153.0 0.0   1   0.0 0.0 204153.0, 204153.0 -0.74
BXD21/TyJ m 323395.0 0.0   1   0.0 0.0 323395.0, 323395.0 -0.49
BXD22/TyJ m 125384.0 0.0   1   0.0 0.0 125384.0, 125384.0 -0.91
BXD24/TyJ m 159388.0 0.0   1   0.0 0.0 159388.0, 159388.0 -0.83
BXD24/TyJ-Cep290rd16/J m 292132.0 0.0   1   0.0 0.0 292132.0, 292132.0 -0.55
BXD28/TyJ m 630869.0 268553.0   2   189895.0 0.426 440974.0, 820764.0 0.17
BXD29-Tlr4lps-2J/J m 327773.0 0.0   1   0.0 0.0 327773.0, 327773.0 -0.48
BXD2/TyJ m 725583.0 0.0   1   0.0 0.0 725583.0, 725583.0 0.37
BXD32/TyJ m 534302.0 0.0   1   0.0 0.0 534302.0, 534302.0 -0.04
BXD33/TyJ m 372359.0 0.0   1   0.0 0.0 372359.0, 372359.0 -0.38
BXD34/TyJ m 247505.0 0.0   1   0.0 0.0 247505.0, 247505.0 -0.65
BXD36/TyJ m 1693920.0 0.0   1   0.0 0.0 1693920.0, 1693920.0 2.43
BXD38/TyJ m 284583.0 0.0   1   0.0 0.0 284583.0, 284583.0 -0.57
BXD39/TyJ m 116744.0 0.0   1   0.0 0.0 116744.0, 116744.0 -0.93
BXD40/TyJ m 536904.0 0.0   1   0.0 0.0 536904.0, 536904.0 -0.03
BXD42/TyJ m 462974.0 0.0   1   0.0 0.0 462974.0, 462974.0 -0.19
BXD5/TyJ m 425666.0 0.0   1   0.0 0.0 425666.0, 425666.0 -0.27
BXD6/TyJ m 325677.0 0.0   1   0.0 0.0 325677.0, 325677.0 -0.48
BXD8/TyJ m 187678.0 0.0   1   0.0 0.0 187678.0, 187678.0 -0.77
BXD9/TyJ m 353611.0 0.0   1   0.0 0.0 353611.0, 353611.0 -0.42
BXH10/TyJ m 185649.0 0.0   1   0.0 0.0 185649.0, 185649.0 -0.78
BXH19/TyJ m 538047.0 0.0   1   0.0 0.0 538047.0, 538047.0 -0.03
BXH20/KccJ m 698145.0 0.0   1   0.0 0.0 698145.0, 698145.0 0.31
BXH22/KccJ m 911493.0 0.0   1   0.0 0.0 911493.0, 911493.0 0.76
BXH2/TyJ m 808339.0 0.0   1   0.0 0.0 808339.0, 808339.0 0.54
BXH4/TyJ m 391980.0 242850.0   2   171721.0 0.62 220258.0, 563701.0 -0.34
BXH6/TyJ m 1619462.0 0.0   1   0.0 0.0 1619462.0, 1619462.0 2.27
BXH7/TyJ m 429782.0 0.0   1   0.0 0.0 429782.0, 429782.0 -0.26
BXH8/TyJ m 1369771.0 0.0   1   0.0 0.0 1369771.0, 1369771.0 1.74
BXH9/TyJ m 487297.0 0.0   1   0.0 0.0 487297.0, 487297.0 -0.14
C3H/HeJ m 329037.0 174129.0   2   123128.0 0.529 205909.0, 452165.0 -0.47
C57BL/6J m 699374.0 183729.0   5 82166.0 0.263 456282.0, 926858.0 0.31
C57L/J m 995899.0 0.0   1   0.0 0.0 995899.0, 995899.0 0.94
C58/J m 1490620.0 0.0   1   0.0 0.0 1490620.0, 1490620.0 2.0
CAST/EiJ m 34669.0 0.0   1   0.0 0.0 34669.0, 34669.0 -1.1
CBA/J m 745190.0 0.0   1   0.0 0.0 745190.0, 745190.0 0.41
CE/J m 3010188.0 0.0   1   0.0 0.0 3010188.0, 3010188.0 5.22
CXB11/HiAJ m 144619.0 74948.0   2   52996.0 0.518 91623.0, 197616.0 -0.87
CXB12/HiAJ m 851481.0 448443.0   2   317097.0 0.527 534384.0, 1168578.0 0.64
CXB13/HiAJ m 321663.0 200621.0   3 115828.0 0.624 111088.0, 510570.0 -0.49
CXB1/ByJ m 578456.0 307111.0   3 177311.0 0.531 246939.0, 853255.0 0.06
CXB2/ByJ m 675096.0 555119.0   3 320498.0 0.822 297575.0, 1312483.0 0.26
CXB3/ByJ m 340253.0 49517.0   2   35014.0 0.146 305239.0, 375266.0 -0.45
CXB4/ByJ m 542562.0 281911.0   2   199341.0 0.52 343221.0, 741904.0 -0.02
CXB6/ByJ m 549081.0 243768.0   3 140739.0 0.444 283122.0, 761887.0 -0.01
CXB7/ByJ m 425039.0 94533.0   2   66845.0 0.222 358194.0, 491884.0 -0.27
CXB8/HiAJ m 444724.0 262088.0   3 151317.0 0.589 143157.0, 617482.0 -0.23
CXB9/HiAJ m 379717.0 86045.0   3 49678.0 0.227 326851.0, 479004.0 -0.37
DBA/2J m 248926.0 82006.0   4 41003.0 0.329 177388.0, 347646.0 -0.64
FVB/NJ m 35774.0 0.0   1   0.0 0.0 35774.0, 35774.0 -1.1
I/LnJ m 238524.0 0.0   1   0.0 0.0 238524.0, 238524.0 -0.67
KK/HlJ m 136855.0 0.0   1   0.0 0.0 136855.0, 136855.0 -0.88
LG/J m 988894.0 0.0   1   0.0 0.0 988894.0, 988894.0 0.93
LP/J m 246784.0 0.0   1   0.0 0.0 246784.0, 246784.0 -0.65
MA/MyJ m 2284288.0 0.0   1   0.0 0.0 2284288.0, 2284288.0 3.68
NOD/ShiLtJ m 1258464.0 0.0   1   0.0 0.0 1258464.0, 1258464.0 1.5
NON/ShiLtJ m 178604.0 0.0   1   0.0 0.0 178604.0, 178604.0 -0.79
NZW/LacJ m 918842.0 0.0   1   0.0 0.0 918842.0, 918842.0 0.78
PL/J m 1165865.0 0.0   1   0.0 0.0 1165865.0, 1165865.0 1.3
RIIIS/J m 43505.0 0.0   1   0.0 0.0 43505.0, 43505.0 -1.08
SEA/GnJ m 471227.0 0.0   1   0.0 0.0 471227.0, 471227.0 -0.17
SJL/J m 1057709.0 0.0   1   0.0 0.0 1057709.0, 1057709.0 1.08
SM/J m 863391.0 0.0   1   0.0 0.0 863391.0, 863391.0 0.66
SWR/J m 50907.0 0.0   1   0.0 0.0 50907.0, 50907.0 -1.06


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
A/J m 386787.2 214083.4295 821857.0741 0.0
AXB19b/PgnJ m 373915.05 214083.4295 808984.9241 0.0
AXB24/PgnJ m 275784.75 214083.4295 710854.6241 0.0
BALB/cJ m 716892.2667 174798.3882 1072125.3313 361659.202
BXA16/PgnJ m 710639.55 214083.4295 1145709.4241 275569.6759
BXD19/TyJ m 934771.95 214083.4295 1369841.8241 499702.0759
BXD28/TyJ m 630869.05 214083.4295 1065938.9241 195799.1759
BXH4/TyJ m 391979.55 214083.4295 827049.4241 0.0
C3H/HeJ m 329037.1 214083.4295 764106.9741 0.0
C57BL/6J m 699374.34 135398.2493 974536.6887 424211.9913
CXB11/HiAJ m 144619.2 214083.4295 579689.0741 0.0
CXB12/HiAJ m 851481.2 214083.4295 1286551.0741 416411.3259
CXB13/HiAJ m 321662.7667 174798.3882 676895.8313 0.0
CXB1/ByJ m 578455.9333 174798.3882 933688.998 223222.8687
CXB2/ByJ m 675095.8 174798.3882 1030328.8646 319862.7354
CXB3/ByJ m 340252.85 214083.4295 775322.7241 0.0
CXB4/ByJ m 542562.15 214083.4295 977632.0241 107492.2759
CXB6/ByJ m 549080.8 174798.3882 904313.8646 193847.7354
CXB7/ByJ m 425039.25 214083.4295 860109.1241 0.0
CXB8/HiAJ m 444724.2 174798.3882 799957.2646 89491.1354
CXB9/HiAJ m 379717.2 174798.3882 734950.2646 24484.1354
DBA/2J m 248925.8 151379.8447 556566.6582 0.0




  GWAS USING LINEAR MIXED MODELS