Phenotype measure:   HMDPpheno8   taurocholate

ID, description, units MPD:50308   taurocholate   taurocholate (16h fast), relative abundance  
Data set, strains HMDPpheno8   HMDP   106 strains     sex: m     age: 16wks
Procedure metabolite quantification
Ontology mappings

  STRAIN COMPARISON PLOT
Dimensions Width:   px    Height:   px
Download Plot   
Visualization Options

HMDPpheno8 - taurocholate (16h fast), relative abundance



  MEASURE SUMMARY
Measure Summary Male
Number of strains tested106 strains
Mean of the strain means3974215   None
Median of the strain means3355469   None
SD of the strain means± 2344732
Coefficient of variation (CV)0.590
Min–max range of strain means915480   –   15067106   None
Mean sample size per strain1.3   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
strain 21 272594186738749.0 12980675558988.0 2.8434 0.0033
Residuals 34 155217978385128.0 4565234658386.12


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
Select table page:
Strain Sex Mean SD N mice SEM CV Min, Max Z score
129X1/SvJ m 1301274.0 0.0   1   0.0 0.0 1301274.0, 1301274.0 -1.14
A/J m 5831261.0 3894583.0   2   2753886.0 0.668 3077376.0, 8585147.0 0.79
AKR/J m 2942024.0 0.0   1   0.0 0.0 2942024.0, 2942024.0 -0.44
AXB10/PgnJ m 3448855.0 0.0   1   0.0 0.0 3448855.0, 3448855.0 -0.22
AXB12/PgnJ m 3335026.0 0.0   1   0.0 0.0 3335026.0, 3335026.0 -0.27
AXB13/PgnJ m 5181750.0 0.0   1   0.0 0.0 5181750.0, 5181750.0 0.51
AXB15/PgnJ m 2102151.0 0.0   1   0.0 0.0 2102151.0, 2102151.0 -0.8
AXB19a/PgnJ m 3602532.0 0.0   1   0.0 0.0 3602532.0, 3602532.0 -0.16
AXB19b/PgnJ m 5913404.0 4603196.0   2   3254951.0 0.778 2658453.0, 9168355.0 0.83
AXB19/PgnJ m 5685226.0 0.0   1   0.0 0.0 5685226.0, 5685226.0 0.73
AXB1/PgnJ m 2373835.0 0.0   1   0.0 0.0 2373835.0, 2373835.0 -0.68
AXB23/PgnJ m 4481006.0 0.0   1   0.0 0.0 4481006.0, 4481006.0 0.22
AXB24/PgnJ m 3031449.0 1237712.0   2   875194.0 0.408 2156254.0, 3906643.0 -0.4
AXB2/PgnJ m 4845188.0 0.0   1   0.0 0.0 4845188.0, 4845188.0 0.37
AXB4/PgnJ m 3375912.0 0.0   1   0.0 0.0 3375912.0, 3375912.0 -0.26
AXB5/PgnJ m 5900006.0 0.0   1   0.0 0.0 5900006.0, 5900006.0 0.82
AXB6/PgnJ m 5935106.0 0.0   1   0.0 0.0 5935106.0, 5935106.0 0.84
AXB8/PgnJ m 7778214.0 0.0   1   0.0 0.0 7778214.0, 7778214.0 1.62
BALB/cJ m 9173752.0 2869351.0   3 1656621.0 0.313 6984625.0, 12422142.0 2.22
BTBR T+ Itpr3tf/J m 3787863.0 0.0   1   0.0 0.0 3787863.0, 3787863.0 -0.08
BUB/BnJ m 3249099.0 0.0   1   0.0 0.0 3249099.0, 3249099.0 -0.31
BXA11/PgnJ m 5385167.0 0.0   1   0.0 0.0 5385167.0, 5385167.0 0.6
BXA12/PgnJ m 2106173.0 0.0   1   0.0 0.0 2106173.0, 2106173.0 -0.8
BXA13/PgnJ m 5097834.0 0.0   1   0.0 0.0 5097834.0, 5097834.0 0.48
BXA14/PgnJ m 6675214.0 0.0   1   0.0 0.0 6675214.0, 6675214.0 1.15
BXA16/PgnJ m 2894596.0 2024640.0   2   1431637.0 0.699 1462959.0, 4326232.0 -0.46
BXA1/PgnJ m 2141378.0 0.0   1   0.0 0.0 2141378.0, 2141378.0 -0.78
BXA24/PgnJ m 2967448.0 0.0   1   0.0 0.0 2967448.0, 2967448.0 -0.43
BXA25/PgnJ m 2443897.0 0.0   1   0.0 0.0 2443897.0, 2443897.0 -0.65
BXA26/PgnJ m 1780634.0 0.0   1   0.0 0.0 1780634.0, 1780634.0 -0.94
BXA2/PgnJ m 4087205.0 0.0   1   0.0 0.0 4087205.0, 4087205.0 0.05
BXA4/PgnJ m 915480.0 0.0   1   0.0 0.0 915480.0, 915480.0 -1.3
BXA7/PgnJ m 3546938.0 0.0   1   0.0 0.0 3546938.0, 3546938.0 -0.18
BXA8/PgnJ m 8259748.0 0.0   1   0.0 0.0 8259748.0, 8259748.0 1.83
BXD11/TyJ m 7215154.0 0.0   1   0.0 0.0 7215154.0, 7215154.0 1.38
BXD12/TyJ m 1291831.0 0.0   1   0.0 0.0 1291831.0, 1291831.0 -1.14
BXD13/TyJ m 4726984.0 0.0   1   0.0 0.0 4726984.0, 4726984.0 0.32
BXD14/TyJ m 2389652.0 0.0   1   0.0 0.0 2389652.0, 2389652.0 -0.68
BXD15/TyJ m 2719752.0 0.0   1   0.0 0.0 2719752.0, 2719752.0 -0.54
BXD18/TyJ m 2538146.0 0.0   1   0.0 0.0 2538146.0, 2538146.0 -0.61
BXD19/TyJ m 8541955.0 2941622.0   2   2080041.0 0.344 6461914.0, 10621996.0 1.95
BXD1/TyJ m 3598060.0 0.0   1   0.0 0.0 3598060.0, 3598060.0 -0.16
BXD20/TyJ m 1912568.0 0.0   1   0.0 0.0 1912568.0, 1912568.0 -0.88
BXD21/TyJ m 1642871.0 0.0   1   0.0 0.0 1642871.0, 1642871.0 -0.99
BXD22/TyJ m 1658436.0 0.0   1   0.0 0.0 1658436.0, 1658436.0 -0.99
BXD24/TyJ m 3536812.0 0.0   1   0.0 0.0 3536812.0, 3536812.0 -0.19
BXD24/TyJ-Cep290rd16/J m 4834206.0 0.0   1   0.0 0.0 4834206.0, 4834206.0 0.37
BXD28/TyJ m 2315282.0 208290.0   2   147283.0 0.09 2167999.0, 2462566.0 -0.71
BXD29-Tlr4lps-2J/J m 2260638.0 0.0   1   0.0 0.0 2260638.0, 2260638.0 -0.73
BXD2/TyJ m 2731835.0 0.0   1   0.0 0.0 2731835.0, 2731835.0 -0.53
BXD32/TyJ m 2058836.0 0.0   1   0.0 0.0 2058836.0, 2058836.0 -0.82
BXD33/TyJ m 1606919.0 0.0   1   0.0 0.0 1606919.0, 1606919.0 -1.01
BXD34/TyJ m 4679860.0 0.0   1   0.0 0.0 4679860.0, 4679860.0 0.3
BXD36/TyJ m 3310290.0 0.0   1   0.0 0.0 3310290.0, 3310290.0 -0.28
BXD38/TyJ m 8248466.0 0.0   1   0.0 0.0 8248466.0, 8248466.0 1.82
BXD39/TyJ m 2400679.0 0.0   1   0.0 0.0 2400679.0, 2400679.0 -0.67
BXD40/TyJ m 1788561.0 0.0   1   0.0 0.0 1788561.0, 1788561.0 -0.93
BXD42/TyJ m 1927730.0 0.0   1   0.0 0.0 1927730.0, 1927730.0 -0.87
BXD5/TyJ m 4945034.0 0.0   1   0.0 0.0 4945034.0, 4945034.0 0.41
BXD6/TyJ m 4269497.0 0.0   1   0.0 0.0 4269497.0, 4269497.0 0.13
BXD8/TyJ m 2145336.0 0.0   1   0.0 0.0 2145336.0, 2145336.0 -0.78
BXD9/TyJ m 2594189.0 0.0   1   0.0 0.0 2594189.0, 2594189.0 -0.59
BXH10/TyJ m 3471696.0 0.0   1   0.0 0.0 3471696.0, 3471696.0 -0.21
BXH19/TyJ m 4569575.0 0.0   1   0.0 0.0 4569575.0, 4569575.0 0.25
BXH20/KccJ m 1608080.0 0.0   1   0.0 0.0 1608080.0, 1608080.0 -1.01
BXH22/KccJ m 2817714.0 0.0   1   0.0 0.0 2817714.0, 2817714.0 -0.49
BXH2/TyJ m 3230880.0 0.0   1   0.0 0.0 3230880.0, 3230880.0 -0.32
BXH4/TyJ m 1949263.0 1168554.0   2   826292.0 0.599 1122971.0, 2775556.0 -0.86
BXH6/TyJ m 6629076.0 0.0   1   0.0 0.0 6629076.0, 6629076.0 1.13
BXH7/TyJ m 2296617.0 0.0   1   0.0 0.0 2296617.0, 2296617.0 -0.72
BXH8/TyJ m 7737008.0 0.0   1   0.0 0.0 7737008.0, 7737008.0 1.6
BXH9/TyJ m 15067106.0 0.0   1   0.0 0.0 15067106.0, 15067106.0 4.73
C3H/HeJ m 6944629.0 1704134.0   2   1205005.0 0.245 5739624.0, 8149634.0 1.27
C57BL/6J m 6585601.0 3745350.0   5 1674972.0 0.569 4370754.0, 13249315.0 1.11
C57L/J m 1725752.0 0.0   1   0.0 0.0 1725752.0, 1725752.0 -0.96
C58/J m 3415485.0 0.0   1   0.0 0.0 3415485.0, 3415485.0 -0.24
CAST/EiJ m 3995966.0 0.0   1   0.0 0.0 3995966.0, 3995966.0 0.01
CBA/J m 2972116.0 0.0   1   0.0 0.0 2972116.0, 2972116.0 -0.43
CE/J m 2302184.0 0.0   1   0.0 0.0 2302184.0, 2302184.0 -0.71
CXB11/HiAJ m 3099485.0 490219.0   2   346637.0 0.158 2752848.0, 3446123.0 -0.37
CXB12/HiAJ m 2747443.0 1833989.0   2   1296826.0 0.668 1450617.0, 4044270.0 -0.52
CXB13/HiAJ m 3420406.0 1600241.0   3 923900.0 0.468 1690870.0, 4848469.0 -0.24
CXB1/ByJ m 6488977.0 1818388.0   3 1049847.0 0.28 4786377.0, 8404420.0 1.07
CXB2/ByJ m 1828988.0 468567.0   3 270527.0 0.256 1383708.0, 2317804.0 -0.91
CXB3/ByJ m 2540831.0 197982.0   2   139994.0 0.0779 2400836.0, 2680825.0 -0.61
CXB4/ByJ m 1998533.0 443597.0   2   313670.0 0.222 1684862.0, 2312203.0 -0.84
CXB6/ByJ m 2896590.0 1347238.0   3 777828.0 0.465 1382272.0, 3962264.0 -0.46
CXB7/ByJ m 4328727.0 1302149.0   2   920758.0 0.301 3407969.0, 5249486.0 0.15
CXB8/HiAJ m 2386884.0 857992.0   3 495362.0 0.359 1428358.0, 3083103.0 -0.68
CXB9/HiAJ m 2266828.0 291441.0   3 168264.0 0.129 1932801.0, 2469301.0 -0.73
DBA/2J m 3924447.0 1252361.0   4 626181.0 0.319 2421501.0, 5047374.0 -0.02
FVB/NJ m 3247068.0 0.0   1   0.0 0.0 3247068.0, 3247068.0 -0.31
I/LnJ m 6061178.0 0.0   1   0.0 0.0 6061178.0, 6061178.0 0.89
KK/HlJ m 6346207.0 0.0   1   0.0 0.0 6346207.0, 6346207.0 1.01
LG/J m 9540875.0 0.0   1   0.0 0.0 9540875.0, 9540875.0 2.37
LP/J m 4865311.0 0.0   1   0.0 0.0 4865311.0, 4865311.0 0.38
MA/MyJ m 11650349.0 0.0   1   0.0 0.0 11650349.0, 11650349.0 3.27
NOD/ShiLtJ m 1053232.0 0.0   1   0.0 0.0 1053232.0, 1053232.0 -1.25
NON/ShiLtJ m 3509455.0 0.0   1   0.0 0.0 3509455.0, 3509455.0 -0.2
NZW/LacJ m 3419140.0 0.0   1   0.0 0.0 3419140.0, 3419140.0 -0.24
PL/J m 3438647.0 0.0   1   0.0 0.0 3438647.0, 3438647.0 -0.23
RIIIS/J m 2254228.0 0.0   1   0.0 0.0 2254228.0, 2254228.0 -0.73
SEA/GnJ m 5402970.0 0.0   1   0.0 0.0 5402970.0, 5402970.0 0.61
SJL/J m 4319161.0 0.0   1   0.0 0.0 4319161.0, 4319161.0 0.15
SM/J m 2986222.0 0.0   1   0.0 0.0 2986222.0, 2986222.0 -0.42
SWR/J m 2459640.0 0.0   1   0.0 0.0 2459640.0, 2459640.0 -0.65


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
A/J m 5831261.25 1510833.3228 8901643.9747 2760878.5253
AXB19b/PgnJ m 5913404.15 1510833.3228 8983786.8747 2843021.4253
AXB24/PgnJ m 3031448.65 1510833.3228 6101831.3747 0.0
BALB/cJ m 9173751.8333 1233590.2424 11680708.8302 6666794.8365
BXA16/PgnJ m 2894595.65 1510833.3228 5964978.3747 0.0
BXD19/TyJ m 8541955.0 1510833.3228 11612337.7247 5471572.2753
BXD28/TyJ m 2315282.25 1510833.3228 5385664.9747 0.0
BXH4/TyJ m 1949263.2 1510833.3228 5019645.9247 0.0
C3H/HeJ m 6944628.75 1510833.3228 10015011.4747 3874246.0253
C57BL/6J m 6585600.9 955534.893 8527481.4397 4643720.3603
CXB11/HiAJ m 3099485.3 1510833.3228 6169868.0247 29102.5753
CXB12/HiAJ m 2747443.15 1510833.3228 5817825.8747 0.0
CXB13/HiAJ m 3420405.6 1233590.2424 5927362.5969 913448.6031
CXB1/ByJ m 6488976.8333 1233590.2424 8995933.8302 3982019.8365
CXB2/ByJ m 1828988.2667 1233590.2424 4335945.2635 0.0
CXB3/ByJ m 2540830.65 1510833.3228 5611213.3747 0.0
CXB4/ByJ m 1998532.9 1510833.3228 5068915.6247 0.0
CXB6/ByJ m 2896590.4 1233590.2424 5403547.3969 389633.4031
CXB7/ByJ m 4328727.25 1510833.3228 7399109.9747 1258344.5253
CXB8/HiAJ m 2386884.4333 1233590.2424 4893841.4302 0.0
CXB9/HiAJ m 2266828.2 1233590.2424 4773785.1969 0.0
DBA/2J m 3924446.625 1068320.4878 6095535.0705 1753358.1795




  GWAS USING LINEAR MIXED MODELS