Phenotype measure:   HMDPpheno8   tauro_muricholate

ID, description, units MPD:50307   tauro_muricholate   tauro-beta-muricholate (16h fast), relative abundance  
Data set, strains HMDPpheno8   HMDP   106 strains     sex: m     age: 16wks
Procedure metabolite quantification
Ontology mappings

  STRAIN COMPARISON PLOT
Dimensions Width:   px    Height:   px
Download Plot   
Visualization Options

HMDPpheno8 - tauro-beta-muricholate (16h fast), relative abundance



  MEASURE SUMMARY
Measure Summary Male
Number of strains tested106 strains
Mean of the strain means554231   None
Median of the strain means308496   None
SD of the strain means± 900056
Coefficient of variation (CV)1.62
Min–max range of strain means18839   –   7779250   None
Mean sample size per strain1.3   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
strain 21 10378104986182.5 494195475532.501 1.1004 0.3923
Residuals 34 15269615899944.4 449106349998.364


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
Select table page:
Strain Sex Mean SD N mice SEM CV Min, Max Z score
129X1/SvJ m 41570.0 0.0   1   0.0 0.0 41570.0, 41570.0 -0.57
A/J m 276583.0 158766.0   2   112265.0 0.574 164319.0, 388848.0 -0.31
AKR/J m 555454.0 0.0   1   0.0 0.0 555454.0, 555454.0 0.0
AXB10/PgnJ m 454772.0 0.0   1   0.0 0.0 454772.0, 454772.0 -0.11
AXB12/PgnJ m 128158.0 0.0   1   0.0 0.0 128158.0, 128158.0 -0.47
AXB13/PgnJ m 718770.0 0.0   1   0.0 0.0 718770.0, 718770.0 0.18
AXB15/PgnJ m 52034.0 0.0   1   0.0 0.0 52034.0, 52034.0 -0.56
AXB19a/PgnJ m 152524.0 0.0   1   0.0 0.0 152524.0, 152524.0 -0.45
AXB19b/PgnJ m 855954.0 961319.0   2   679755.0 1.12 176199.0, 1535709.0 0.34
AXB19/PgnJ m 194776.0 0.0   1   0.0 0.0 194776.0, 194776.0 -0.4
AXB1/PgnJ m 349813.0 0.0   1   0.0 0.0 349813.0, 349813.0 -0.23
AXB23/PgnJ m 174621.0 0.0   1   0.0 0.0 174621.0, 174621.0 -0.42
AXB24/PgnJ m 96137.0 43411.0   2   30696.0 0.452 65441.0, 126833.0 -0.51
AXB2/PgnJ m 235914.0 0.0   1   0.0 0.0 235914.0, 235914.0 -0.35
AXB4/PgnJ m 120092.0 0.0   1   0.0 0.0 120092.0, 120092.0 -0.48
AXB5/PgnJ m 1547008.0 0.0   1   0.0 0.0 1547008.0, 1547008.0 1.1
AXB6/PgnJ m 470728.0 0.0   1   0.0 0.0 470728.0, 470728.0 -0.09
AXB8/PgnJ m 1164974.0 0.0   1   0.0 0.0 1164974.0, 1164974.0 0.68
BALB/cJ m 1945812.0 1654380.0   3 955157.0 0.85 324775.0, 3631632.0 1.55
BTBR T+ Itpr3tf/J m 299546.0 0.0   1   0.0 0.0 299546.0, 299546.0 -0.28
BUB/BnJ m 217796.0 0.0   1   0.0 0.0 217796.0, 217796.0 -0.37
BXA11/PgnJ m 236442.0 0.0   1   0.0 0.0 236442.0, 236442.0 -0.35
BXA12/PgnJ m 189355.0 0.0   1   0.0 0.0 189355.0, 189355.0 -0.41
BXA13/PgnJ m 341693.0 0.0   1   0.0 0.0 341693.0, 341693.0 -0.24
BXA14/PgnJ m 974238.0 0.0   1   0.0 0.0 974238.0, 974238.0 0.47
BXA16/PgnJ m 185842.0 208099.0   2   147148.0 1.12 38694.0, 332990.0 -0.41
BXA1/PgnJ m 69643.0 0.0   1   0.0 0.0 69643.0, 69643.0 -0.54
BXA24/PgnJ m 395003.0 0.0   1   0.0 0.0 395003.0, 395003.0 -0.18
BXA25/PgnJ m 232732.0 0.0   1   0.0 0.0 232732.0, 232732.0 -0.36
BXA26/PgnJ m 214752.0 0.0   1   0.0 0.0 214752.0, 214752.0 -0.38
BXA2/PgnJ m 403828.0 0.0   1   0.0 0.0 403828.0, 403828.0 -0.17
BXA4/PgnJ m 97078.0 0.0   1   0.0 0.0 97078.0, 97078.0 -0.51
BXA7/PgnJ m 484060.0 0.0   1   0.0 0.0 484060.0, 484060.0 -0.08
BXA8/PgnJ m 1033777.0 0.0   1   0.0 0.0 1033777.0, 1033777.0 0.53
BXD11/TyJ m 1240583.0 0.0   1   0.0 0.0 1240583.0, 1240583.0 0.76
BXD12/TyJ m 22869.0 0.0   1   0.0 0.0 22869.0, 22869.0 -0.59
BXD13/TyJ m 507975.0 0.0   1   0.0 0.0 507975.0, 507975.0 -0.05
BXD14/TyJ m 142207.0 0.0   1   0.0 0.0 142207.0, 142207.0 -0.46
BXD15/TyJ m 546392.0 0.0   1   0.0 0.0 546392.0, 546392.0 -0.01
BXD18/TyJ m 18839.0 0.0   1   0.0 0.0 18839.0, 18839.0 -0.59
BXD19/TyJ m 598033.0 287340.0   2   203180.0 0.48 394852.0, 801213.0 0.05
BXD1/TyJ m 152956.0 0.0   1   0.0 0.0 152956.0, 152956.0 -0.45
BXD20/TyJ m 163174.0 0.0   1   0.0 0.0 163174.0, 163174.0 -0.43
BXD21/TyJ m 51465.0 0.0   1   0.0 0.0 51465.0, 51465.0 -0.56
BXD22/TyJ m 115895.0 0.0   1   0.0 0.0 115895.0, 115895.0 -0.49
BXD24/TyJ m 474691.0 0.0   1   0.0 0.0 474691.0, 474691.0 -0.09
BXD24/TyJ-Cep290rd16/J m 772525.0 0.0   1   0.0 0.0 772525.0, 772525.0 0.24
BXD28/TyJ m 148712.0 31707.0   2   22420.0 0.213 126292.0, 171132.0 -0.45
BXD29-Tlr4lps-2J/J m 58743.0 0.0   1   0.0 0.0 58743.0, 58743.0 -0.55
BXD2/TyJ m 232836.0 0.0   1   0.0 0.0 232836.0, 232836.0 -0.36
BXD32/TyJ m 337832.0 0.0   1   0.0 0.0 337832.0, 337832.0 -0.24
BXD33/TyJ m 213193.0 0.0   1   0.0 0.0 213193.0, 213193.0 -0.38
BXD34/TyJ m 1160888.0 0.0   1   0.0 0.0 1160888.0, 1160888.0 0.67
BXD36/TyJ m 319483.0 0.0   1   0.0 0.0 319483.0, 319483.0 -0.26
BXD38/TyJ m 3691500.0 0.0   1   0.0 0.0 3691500.0, 3691500.0 3.49
BXD39/TyJ m 226615.0 0.0   1   0.0 0.0 226615.0, 226615.0 -0.36
BXD40/TyJ m 370964.0 0.0   1   0.0 0.0 370964.0, 370964.0 -0.2
BXD42/TyJ m 64021.0 0.0   1   0.0 0.0 64021.0, 64021.0 -0.54
BXD5/TyJ m 257736.0 0.0   1   0.0 0.0 257736.0, 257736.0 -0.33
BXD6/TyJ m 182701.0 0.0   1   0.0 0.0 182701.0, 182701.0 -0.41
BXD8/TyJ m 162922.0 0.0   1   0.0 0.0 162922.0, 162922.0 -0.43
BXD9/TyJ m 103575.0 0.0   1   0.0 0.0 103575.0, 103575.0 -0.5
BXH10/TyJ m 47914.0 0.0   1   0.0 0.0 47914.0, 47914.0 -0.56
BXH19/TyJ m 710030.0 0.0   1   0.0 0.0 710030.0, 710030.0 0.17
BXH20/KccJ m 87448.0 0.0   1   0.0 0.0 87448.0, 87448.0 -0.52
BXH22/KccJ m 46901.0 0.0   1   0.0 0.0 46901.0, 46901.0 -0.56
BXH2/TyJ m 108531.0 0.0   1   0.0 0.0 108531.0, 108531.0 -0.5
BXH4/TyJ m 58461.0 49656.0   2   35112.0 0.849 23349.0, 93573.0 -0.55
BXH6/TyJ m 549092.0 0.0   1   0.0 0.0 549092.0, 549092.0 -0.01
BXH7/TyJ m 51166.0 0.0   1   0.0 0.0 51166.0, 51166.0 -0.56
BXH8/TyJ m 1035831.0 0.0   1   0.0 0.0 1035831.0, 1035831.0 0.54
BXH9/TyJ m 7779250.0 0.0   1   0.0 0.0 7779250.0, 7779250.0 8.03
C3H/HeJ m 473262.0 60748.0   2   42955.0 0.128 430307.0, 516218.0 -0.09
C57BL/6J m 1039430.0 1124085.0   5 502706.0 1.08 425652.0, 3043152.0 0.54
C57L/J m 317445.0 0.0   1   0.0 0.0 317445.0, 317445.0 -0.26
C58/J m 821884.0 0.0   1   0.0 0.0 821884.0, 821884.0 0.3
CAST/EiJ m 123654.0 0.0   1   0.0 0.0 123654.0, 123654.0 -0.48
CBA/J m 168412.0 0.0   1   0.0 0.0 168412.0, 168412.0 -0.43
CE/J m 295148.0 0.0   1   0.0 0.0 295148.0, 295148.0 -0.29
CXB11/HiAJ m 318222.0 258596.0   2   182855.0 0.813 135366.0, 501077.0 -0.26
CXB12/HiAJ m 926785.0 773995.0   2   547297.0 0.835 379488.0, 1474082.0 0.41
CXB13/HiAJ m 645418.0 518950.0   3 299616.0 0.804 89904.0, 1117758.0 0.1
CXB1/ByJ m 685532.0 344591.0   3 198949.0 0.503 289035.0, 912680.0 0.15
CXB2/ByJ m 421730.0 384815.0   3 222173.0 0.912 88110.0, 842717.0 -0.15
CXB3/ByJ m 449639.0 380745.0   2   269228.0 0.847 180411.0, 718866.0 -0.12
CXB4/ByJ m 882985.0 475688.0   2   336362.0 0.539 546622.0, 1219347.0 0.37
CXB6/ByJ m 611097.0 426899.0   3 246470.0 0.699 129712.0, 943681.0 0.06
CXB7/ByJ m 976314.0 963432.0   2   681249.0 0.987 295065.0, 1657564.0 0.47
CXB8/HiAJ m 648377.0 318707.0   3 184006.0 0.492 342885.0, 978831.0 0.1
CXB9/HiAJ m 273710.0 57205.0   3 33027.0 0.209 237431.0, 339654.0 -0.31
DBA/2J m 259819.0 122893.0   4 61447.0 0.473 81095.0, 352419.0 -0.33
FVB/NJ m 482022.0 0.0   1   0.0 0.0 482022.0, 482022.0 -0.08
I/LnJ m 696508.0 0.0   1   0.0 0.0 696508.0, 696508.0 0.16
KK/HlJ m 673632.0 0.0   1   0.0 0.0 673632.0, 673632.0 0.13
LG/J m 1876169.0 0.0   1   0.0 0.0 1876169.0, 1876169.0 1.47
LP/J m 504766.0 0.0   1   0.0 0.0 504766.0, 504766.0 -0.05
MA/MyJ m 1561664.0 0.0   1   0.0 0.0 1561664.0, 1561664.0 1.12
NOD/ShiLtJ m 74973.0 0.0   1   0.0 0.0 74973.0, 74973.0 -0.53
NON/ShiLtJ m 2762382.0 0.0   1   0.0 0.0 2762382.0, 2762382.0 2.45
NZW/LacJ m 100218.0 0.0   1   0.0 0.0 100218.0, 100218.0 -0.5
PL/J m 291713.0 0.0   1   0.0 0.0 291713.0, 291713.0 -0.29
RIIIS/J m 50048.0 0.0   1   0.0 0.0 50048.0, 50048.0 -0.56
SEA/GnJ m 130182.0 0.0   1   0.0 0.0 130182.0, 130182.0 -0.47
SJL/J m 880261.0 0.0   1   0.0 0.0 880261.0, 880261.0 0.36
SM/J m 232223.0 0.0   1   0.0 0.0 232223.0, 232223.0 -0.36
SWR/J m 367424.0 0.0   1   0.0 0.0 367424.0, 367424.0 -0.21


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
A/J m 276583.4 473870.4201 1239603.9593 0.0
AXB19b/PgnJ m 855953.85 473870.4201 1818974.4093 0.0
AXB24/PgnJ m 96136.9 473870.4201 1059157.4593 0.0
BALB/cJ m 1945811.9333 386913.5778 2732114.9273 1159508.9393
BXA16/PgnJ m 185841.8 473870.4201 1148862.3593 0.0
BXD19/TyJ m 598032.7 473870.4201 1561053.2593 0.0
BXD28/TyJ m 148712.0 473870.4201 1111732.5593 0.0
BXH4/TyJ m 58461.25 473870.4201 1021481.8093 0.0
C3H/HeJ m 473262.25 473870.4201 1436282.8093 0.0
C57BL/6J m 1039429.78 299701.9686 1648497.4602 430362.0998
CXB11/HiAJ m 318221.5 473870.4201 1281242.0593 0.0
CXB12/HiAJ m 926784.8 473870.4201 1889805.3593 0.0
CXB13/HiAJ m 645417.8667 386913.5778 1431720.8607 0.0
CXB1/ByJ m 685531.6667 386913.5778 1471834.6607 0.0
CXB2/ByJ m 421730.0 386913.5778 1208032.994 0.0
CXB3/ByJ m 449638.7 473870.4201 1412659.2593 0.0
CXB4/ByJ m 882984.65 473870.4201 1846005.2093 0.0
CXB6/ByJ m 611097.4667 386913.5778 1397400.4607 0.0
CXB7/ByJ m 976314.2 473870.4201 1939334.7593 13293.6407
CXB8/HiAJ m 648377.4 386913.5778 1434680.394 0.0
CXB9/HiAJ m 273710.4333 386913.5778 1060013.4273 0.0
DBA/2J m 259818.6 335076.9874 940776.9679 0.0




  GWAS USING LINEAR MIXED MODELS