Project measure / variable:   HMDPpheno8   chenodeoxycholate

ID, description, units MPD:50303   chenodeoxycholate   chenodeoxycholate (16h fast), relative abundance    
Data set, strains HMDPpheno8   HMDP   105 strains     sex: m     age: 16wks
Procedure metabolite quantification
Ontology mappings


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  STRAIN COMPARISON PLOT
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HMDPpheno8 - chenodeoxycholate (16h fast), relative abundance



  MEASURE SUMMARY
Measure Summary Male
Number of strains tested105 strains
Mean of the strain means82741   None
Median of the strain means69014   None
SD of the strain means± 50110
Coefficient of variation (CV)0.606
Min–max range of strain means24352   –   364588   None
Mean sample size per strain1.3   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
strain 21 115997720658.202 5523700983.7239 2.8058 0.0036
Residuals 34 66935331011.9363 1968686206.2334


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
Select table page:
Strain Sex Mean SD N mice SEM CV Min, Max Z score
129X1/SvJ m 40769.0 0.0   1   0.0 0.0 40769.0, 40769.0 -0.84
A/J m 50857.0 16436.0   2   11622.0 0.323 39235.0, 62479.0 -0.64
AKR/J m 99370.0 0.0   1   0.0 0.0 99370.0, 99370.0 0.33
AXB10/PgnJ m 54179.0 0.0   1   0.0 0.0 54179.0, 54179.0 -0.57
AXB12/PgnJ m 49596.0 0.0   1   0.0 0.0 49596.0, 49596.0 -0.66
AXB13/PgnJ m 72092.0 0.0   1   0.0 0.0 72092.0, 72092.0 -0.21
AXB15/PgnJ m 40268.0 0.0   1   0.0 0.0 40268.0, 40268.0 -0.85
AXB19a/PgnJ m 93819.0 0.0   1   0.0 0.0 93819.0, 93819.0 0.22
AXB19b/PgnJ m 80656.0 8491.0   2   6004.0 0.105 74652.0, 86660.0 -0.04
AXB19/PgnJ m 97019.0 0.0   1   0.0 0.0 97019.0, 97019.0 0.28
AXB1/PgnJ m 27847.0 0.0   1   0.0 0.0 27847.0, 27847.0 -1.1
AXB23/PgnJ m 74262.0 0.0   1   0.0 0.0 74262.0, 74262.0 -0.17
AXB24/PgnJ m 30842.0 542.0   2   383.0 0.0176 30459.0, 31225.0 -1.04
AXB2/PgnJ m 46455.0 0.0   1   0.0 0.0 46455.0, 46455.0 -0.72
AXB4/PgnJ m 45242.0 0.0   1   0.0 0.0 45242.0, 45242.0 -0.75
AXB5/PgnJ m 46437.0 0.0   1   0.0 0.0 46437.0, 46437.0 -0.72
AXB6/PgnJ m 82808.0 0.0   1   0.0 0.0 82808.0, 82808.0 0.0
AXB8/PgnJ m 184115.0 0.0   1   0.0 0.0 184115.0, 184115.0 2.02
BALB/cJ m 116472.0 34067.0   3 19669.0 0.292 82560.0, 150692.0 0.67
BTBR T+ Itpr3tf/J m 58486.0 0.0   1   0.0 0.0 58486.0, 58486.0 -0.48
BUB/BnJ m 28367.0 0.0   1   0.0 0.0 28367.0, 28367.0 -1.09
BXA11/PgnJ m 74986.0 0.0   1   0.0 0.0 74986.0, 74986.0 -0.15
BXA12/PgnJ m 28740.0 0.0   1   0.0 0.0 28740.0, 28740.0 -1.08
BXA13/PgnJ m 110453.0 0.0   1   0.0 0.0 110453.0, 110453.0 0.55
BXA14/PgnJ m 133028.0 0.0   1   0.0 0.0 133028.0, 133028.0 1.0
BXA16/PgnJ m 65895.0 59696.0   2   42212.0 0.906 23684.0, 108107.0 -0.34
BXA1/PgnJ m 69014.0 0.0   1   0.0 0.0 69014.0, 69014.0 -0.27
BXA24/PgnJ m 43252.0 0.0   1   0.0 0.0 43252.0, 43252.0 -0.79
BXA25/PgnJ m 62903.0 0.0   1   0.0 0.0 62903.0, 62903.0 -0.4
BXA26/PgnJ m 56508.0 0.0   1   0.0 0.0 56508.0, 56508.0 -0.52
BXA2/PgnJ m 71227.0 0.0   1   0.0 0.0 71227.0, 71227.0 -0.23
BXA4/PgnJ m 26007.0 0.0   1   0.0 0.0 26007.0, 26007.0 -1.13
BXA7/PgnJ m 54245.0 0.0   1   0.0 0.0 54245.0, 54245.0 -0.57
BXA8/PgnJ m 276610.0 0.0   1   0.0 0.0 276610.0, 276610.0 3.87
BXD11/TyJ m 157618.0 0.0   1   0.0 0.0 157618.0, 157618.0 1.49
BXD12/TyJ m 70365.0 0.0   1   0.0 0.0 70365.0, 70365.0 -0.25
BXD13/TyJ m 94090.0 0.0   1   0.0 0.0 94090.0, 94090.0 0.23
BXD14/TyJ m 97294.0 0.0   1   0.0 0.0 97294.0, 97294.0 0.29
BXD15/TyJ m 76269.0 0.0   1   0.0 0.0 76269.0, 76269.0 -0.13
BXD18/TyJ m 66172.0 0.0   1   0.0 0.0 66172.0, 66172.0 -0.33
BXD19/TyJ m 155943.0 28381.0   2   20068.0 0.182 135875.0, 176012.0 1.46
BXD1/TyJ m 58567.0 0.0   1   0.0 0.0 58567.0, 58567.0 -0.48
BXD20/TyJ m 39085.0 0.0   1   0.0 0.0 39085.0, 39085.0 -0.87
BXD21/TyJ m 47109.0 0.0   1   0.0 0.0 47109.0, 47109.0 -0.71
BXD22/TyJ m 42328.0 0.0   1   0.0 0.0 42328.0, 42328.0 -0.81
BXD24/TyJ m 53018.0 0.0   1   0.0 0.0 53018.0, 53018.0 -0.59
BXD24/TyJ-Cep290rd16/J m 64958.0 0.0   1   0.0 0.0 64958.0, 64958.0 -0.35
BXD28/TyJ m 83282.0 4220.0   2   2984.0 0.0507 80298.0, 86266.0 0.01
BXD29-Tlr4lps-2J/J m 89334.0 0.0   1   0.0 0.0 89334.0, 89334.0 0.13
BXD2/TyJ m 42818.0 0.0   1   0.0 0.0 42818.0, 42818.0 -0.8
BXD32/TyJ m 64070.0 0.0   1   0.0 0.0 64070.0, 64070.0 -0.37
BXD33/TyJ m 90739.0 0.0   1   0.0 0.0 90739.0, 90739.0 0.16
BXD34/TyJ m 112700.0 0.0   1   0.0 0.0 112700.0, 112700.0 0.6
BXD36/TyJ m 141894.0 0.0   1   0.0 0.0 141894.0, 141894.0 1.18
BXD38/TyJ m 128307.0 0.0   1   0.0 0.0 128307.0, 128307.0 0.91
BXD39/TyJ m 60685.0 0.0   1   0.0 0.0 60685.0, 60685.0 -0.44
BXD40/TyJ m 24352.0 0.0   1   0.0 0.0 24352.0, 24352.0 -1.17
BXD42/TyJ m 39319.0 0.0   1   0.0 0.0 39319.0, 39319.0 -0.87
BXD5/TyJ m 61188.0 0.0   1   0.0 0.0 61188.0, 61188.0 -0.43
BXD6/TyJ m 104097.0 0.0   1   0.0 0.0 104097.0, 104097.0 0.43
BXD8/TyJ m 39288.0 0.0   1   0.0 0.0 39288.0, 39288.0 -0.87
BXD9/TyJ m 94435.0 0.0   1   0.0 0.0 94435.0, 94435.0 0.23
BXH10/TyJ m 62805.0 0.0   1   0.0 0.0 62805.0, 62805.0 -0.4
BXH19/TyJ m 72405.0 0.0   1   0.0 0.0 72405.0, 72405.0 -0.21
BXH20/KccJ m 46875.0 0.0   1   0.0 0.0 46875.0, 46875.0 -0.72
BXH22/KccJ m 60710.0 0.0   1   0.0 0.0 60710.0, 60710.0 -0.44
BXH2/TyJ m 60252.0 0.0   1   0.0 0.0 60252.0, 60252.0 -0.45
BXH4/TyJ m 82035.0 92253.0   2   65233.0 1.12 16803.0, 147268.0 -0.01
BXH6/TyJ m 74105.0 0.0   1   0.0 0.0 74105.0, 74105.0 -0.17
BXH7/TyJ m 97454.0 0.0   1   0.0 0.0 97454.0, 97454.0 0.29
BXH8/TyJ m 91610.0 0.0   1   0.0 0.0 91610.0, 91610.0 0.18
BXH9/TyJ m 121142.0 0.0   1   0.0 0.0 121142.0, 121142.0 0.77
C3H/HeJ m 76167.0 9161.0   2   6478.0 0.12 69689.0, 82644.0 -0.13
C57BL/6J m 174058.0 83945.0   5 37542.0 0.482 108037.0, 315248.0 1.82
C58/J m 45669.0 0.0   1   0.0 0.0 45669.0, 45669.0 -0.74
CAST/EiJ m 98304.0 0.0   1   0.0 0.0 98304.0, 98304.0 0.31
CBA/J m 95959.0 0.0   1   0.0 0.0 95959.0, 95959.0 0.26
CE/J m 66639.0 0.0   1   0.0 0.0 66639.0, 66639.0 -0.32
CXB11/HiAJ m 40714.0 14928.0   2   10556.0 0.367 30158.0, 51270.0 -0.84
CXB12/HiAJ m 42850.0 12333.0   2   8721.0 0.288 34129.0, 51570.0 -0.8
CXB13/HiAJ m 118180.0 61689.0   3 35616.0 0.522 61891.0, 184130.0 0.71
CXB1/ByJ m 68150.0 22965.0   3 13259.0 0.337 47074.0, 92625.0 -0.29
CXB2/ByJ m 33356.0 13362.0   3 7714.0 0.401 20775.0, 47381.0 -0.99
CXB3/ByJ m 67360.0 9209.0   2   6512.0 0.137 60848.0, 73872.0 -0.31
CXB4/ByJ m 85541.0 27310.0   2   19311.0 0.319 66230.0, 104852.0 0.06
CXB6/ByJ m 31155.0 22450.0   3 12961.0 0.721 12819.0, 56192.0 -1.03
CXB7/ByJ m 81252.0 43229.0   2   30568.0 0.532 50684.0, 111820.0 -0.03
CXB8/HiAJ m 60896.0 15094.0   3 8715.0 0.248 44034.0, 73146.0 -0.44
CXB9/HiAJ m 53235.0 11102.0   3 6410.0 0.209 42568.0, 64727.0 -0.59
DBA/2J m 156572.0 55664.0   4 27832.0 0.356 101280.0, 213984.0 1.47
FVB/NJ m 34024.0 0.0   1   0.0 0.0 34024.0, 34024.0 -0.97
I/LnJ m 68152.0 0.0   1   0.0 0.0 68152.0, 68152.0 -0.29
KK/HlJ m 135902.0 0.0   1   0.0 0.0 135902.0, 135902.0 1.06
LG/J m 102038.0 0.0   1   0.0 0.0 102038.0, 102038.0 0.39
LP/J m 178338.0 0.0   1   0.0 0.0 178338.0, 178338.0 1.91
MA/MyJ m 177418.0 0.0   1   0.0 0.0 177418.0, 177418.0 1.89
NOD/ShiLtJ m 60709.0 0.0   1   0.0 0.0 60709.0, 60709.0 -0.44
NON/ShiLtJ m 364588.0 0.0   1   0.0 0.0 364588.0, 364588.0 5.62
NZW/LacJ m 119554.0 0.0   1   0.0 0.0 119554.0, 119554.0 0.73
PL/J m 121532.0 0.0   1   0.0 0.0 121532.0, 121532.0 0.77
RIIIS/J m 115764.0 0.0   1   0.0 0.0 115764.0, 115764.0 0.66
SEA/GnJ m 64161.0 0.0   1   0.0 0.0 64161.0, 64161.0 -0.37
SJL/J m 117014.0 0.0   1   0.0 0.0 117014.0, 117014.0 0.68
SM/J m 62350.0 0.0   1   0.0 0.0 62350.0, 62350.0 -0.41
SWR/J m 108701.0 0.0   1   0.0 0.0 108701.0, 108701.0 0.52


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
A/J m 50856.8 31374.2427 114616.9324 0.0
AXB19b/PgnJ m 80655.95 31374.2427 144416.0824 16895.8176
AXB24/PgnJ m 30842.25 31374.2427 94602.3824 0.0
BALB/cJ m 116472.1667 25616.9619 168532.0968 64412.2366
BXA16/PgnJ m 65895.25 31374.2427 129655.3824 2135.1176
BXD19/TyJ m 155943.25 31374.2427 219703.3824 92183.1176
BXD28/TyJ m 83282.1 31374.2427 147042.2324 19521.9676
BXH4/TyJ m 82035.2 31374.2427 145795.3324 18275.0676
C3H/HeJ m 76166.8 31374.2427 139926.9324 12406.6676
C57BL/6J m 174057.72 19842.8133 214383.1685 133732.2715
CXB11/HiAJ m 40713.65 31374.2427 104473.7824 0.0
CXB12/HiAJ m 42849.8 31374.2427 106609.9324 0.0
CXB13/HiAJ m 118179.9667 25616.9619 170239.8968 66120.0366
CXB1/ByJ m 68149.5 25616.9619 120209.4301 16089.5699
CXB2/ByJ m 33356.5 25616.9619 85416.4301 0.0
CXB3/ByJ m 67359.95 31374.2427 131120.0824 3599.8176
CXB4/ByJ m 85541.1 31374.2427 149301.2324 21780.9676
CXB6/ByJ m 31154.9667 25616.9619 83214.8968 0.0
CXB7/ByJ m 81252.25 31374.2427 145012.3824 17492.1176
CXB8/HiAJ m 60895.6667 25616.9619 112955.5968 8835.7366
CXB9/HiAJ m 53234.7667 25616.9619 105294.6968 1174.8366
DBA/2J m 156572.2 22184.9397 201657.422 111486.978




  GWAS USING LINEAR MIXED MODELS