Project measure / variable:   HMDPpheno8   beta_muricholate

ID, description, units MPD:50302   beta_muricholate   beta-muricholate (16h fast), relative abundance    
Data set, strains HMDPpheno8   HMDP   106 strains     sex: m     age: 16wks
Procedure metabolite quantification
Ontology mappings


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  STRAIN COMPARISON PLOT
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HMDPpheno8 - beta-muricholate (16h fast), relative abundance



  MEASURE SUMMARY
Measure Summary Male
Number of strains tested106 strains
Mean of the strain means3142463   None
Median of the strain means2562456   None
SD of the strain means± 2165307
Coefficient of variation (CV)0.689
Min–max range of strain means458664   –   11397646   None
Mean sample size per strain1.3   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
strain 21 109208320161248.0 5200396198154.67 2.1097 0.0256
Residuals 34 83808681744074.5 2464961227766.9


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
Select table page:
Strain Sex Mean SD N mice SEM CV Min, Max Z score
129X1/SvJ m 894134.0 0.0   1   0.0 0.0 894134.0, 894134.0 -1.04
A/J m 2446689.0 1046926.0   2   740289.0 0.428 1706400.0, 3186978.0 -0.32
AKR/J m 3933130.0 0.0   1   0.0 0.0 3933130.0, 3933130.0 0.37
AXB10/PgnJ m 2986931.0 0.0   1   0.0 0.0 2986931.0, 2986931.0 -0.07
AXB12/PgnJ m 1635263.0 0.0   1   0.0 0.0 1635263.0, 1635263.0 -0.7
AXB13/PgnJ m 2887748.0 0.0   1   0.0 0.0 2887748.0, 2887748.0 -0.12
AXB15/PgnJ m 1150647.0 0.0   1   0.0 0.0 1150647.0, 1150647.0 -0.92
AXB19a/PgnJ m 2546719.0 0.0   1   0.0 0.0 2546719.0, 2546719.0 -0.28
AXB19b/PgnJ m 4998018.0 3513082.0   2   2484124.0 0.703 2513894.0, 7482142.0 0.86
AXB19/PgnJ m 1156774.0 0.0   1   0.0 0.0 1156774.0, 1156774.0 -0.92
AXB1/PgnJ m 1930008.0 0.0   1   0.0 0.0 1930008.0, 1930008.0 -0.56
AXB23/PgnJ m 3026541.0 0.0   1   0.0 0.0 3026541.0, 3026541.0 -0.05
AXB24/PgnJ m 1878328.0 65032.0   2   45984.0 0.0346 1832344.0, 1924313.0 -0.58
AXB2/PgnJ m 3297478.0 0.0   1   0.0 0.0 3297478.0, 3297478.0 0.07
AXB4/PgnJ m 1108740.0 0.0   1   0.0 0.0 1108740.0, 1108740.0 -0.94
AXB5/PgnJ m 5196773.0 0.0   1   0.0 0.0 5196773.0, 5196773.0 0.95
AXB6/PgnJ m 3593414.0 0.0   1   0.0 0.0 3593414.0, 3593414.0 0.21
AXB8/PgnJ m 5093938.0 0.0   1   0.0 0.0 5093938.0, 5093938.0 0.9
BALB/cJ m 6416073.0 1970187.0   3 1137488.0 0.307 4164774.0, 7825233.0 1.51
BTBR T+ Itpr3tf/J m 4360548.0 0.0   1   0.0 0.0 4360548.0, 4360548.0 0.56
BUB/BnJ m 2804874.0 0.0   1   0.0 0.0 2804874.0, 2804874.0 -0.16
BXA11/PgnJ m 3237408.0 0.0   1   0.0 0.0 3237408.0, 3237408.0 0.04
BXA12/PgnJ m 2291402.0 0.0   1   0.0 0.0 2291402.0, 2291402.0 -0.39
BXA13/PgnJ m 3608380.0 0.0   1   0.0 0.0 3608380.0, 3608380.0 0.22
BXA14/PgnJ m 8086576.0 0.0   1   0.0 0.0 8086576.0, 8086576.0 2.28
BXA16/PgnJ m 1471429.0 973397.0   2   688296.0 0.662 783133.0, 2159724.0 -0.77
BXA1/PgnJ m 573190.0 0.0   1   0.0 0.0 573190.0, 573190.0 -1.19
BXA24/PgnJ m 2076845.0 0.0   1   0.0 0.0 2076845.0, 2076845.0 -0.49
BXA25/PgnJ m 2365365.0 0.0   1   0.0 0.0 2365365.0, 2365365.0 -0.36
BXA26/PgnJ m 1404609.0 0.0   1   0.0 0.0 1404609.0, 1404609.0 -0.8
BXA2/PgnJ m 3195632.0 0.0   1   0.0 0.0 3195632.0, 3195632.0 0.02
BXA4/PgnJ m 458664.0 0.0   1   0.0 0.0 458664.0, 458664.0 -1.24
BXA7/PgnJ m 2318442.0 0.0   1   0.0 0.0 2318442.0, 2318442.0 -0.38
BXA8/PgnJ m 2790993.0 0.0   1   0.0 0.0 2790993.0, 2790993.0 -0.16
BXD11/TyJ m 6063737.0 0.0   1   0.0 0.0 6063737.0, 6063737.0 1.35
BXD12/TyJ m 916170.0 0.0   1   0.0 0.0 916170.0, 916170.0 -1.03
BXD13/TyJ m 6503247.0 0.0   1   0.0 0.0 6503247.0, 6503247.0 1.55
BXD14/TyJ m 1567637.0 0.0   1   0.0 0.0 1567637.0, 1567637.0 -0.73
BXD15/TyJ m 2176074.0 0.0   1   0.0 0.0 2176074.0, 2176074.0 -0.45
BXD18/TyJ m 1328924.0 0.0   1   0.0 0.0 1328924.0, 1328924.0 -0.84
BXD19/TyJ m 4088726.0 882650.0   2   624128.0 0.216 3464598.0, 4712853.0 0.44
BXD1/TyJ m 1835069.0 0.0   1   0.0 0.0 1835069.0, 1835069.0 -0.6
BXD20/TyJ m 1322839.0 0.0   1   0.0 0.0 1322839.0, 1322839.0 -0.84
BXD21/TyJ m 1372970.0 0.0   1   0.0 0.0 1372970.0, 1372970.0 -0.82
BXD22/TyJ m 2333723.0 0.0   1   0.0 0.0 2333723.0, 2333723.0 -0.37
BXD24/TyJ m 4386951.0 0.0   1   0.0 0.0 4386951.0, 4386951.0 0.57
BXD24/TyJ-Cep290rd16/J m 5732370.0 0.0   1   0.0 0.0 5732370.0, 5732370.0 1.2
BXD28/TyJ m 1365277.0 567556.0   2   401323.0 0.416 963955.0, 1766600.0 -0.82
BXD29-Tlr4lps-2J/J m 1386369.0 0.0   1   0.0 0.0 1386369.0, 1386369.0 -0.81
BXD2/TyJ m 996564.0 0.0   1   0.0 0.0 996564.0, 996564.0 -0.99
BXD32/TyJ m 4103330.0 0.0   1   0.0 0.0 4103330.0, 4103330.0 0.44
BXD33/TyJ m 2988472.0 0.0   1   0.0 0.0 2988472.0, 2988472.0 -0.07
BXD34/TyJ m 5442789.0 0.0   1   0.0 0.0 5442789.0, 5442789.0 1.06
BXD36/TyJ m 1944764.0 0.0   1   0.0 0.0 1944764.0, 1944764.0 -0.55
BXD38/TyJ m 11063193.0 0.0   1   0.0 0.0 11063193.0, 11063193.0 3.66
BXD39/TyJ m 1778104.0 0.0   1   0.0 0.0 1778104.0, 1778104.0 -0.63
BXD40/TyJ m 2578192.0 0.0   1   0.0 0.0 2578192.0, 2578192.0 -0.26
BXD42/TyJ m 772134.0 0.0   1   0.0 0.0 772134.0, 772134.0 -1.09
BXD5/TyJ m 3353967.0 0.0   1   0.0 0.0 3353967.0, 3353967.0 0.1
BXD6/TyJ m 1847459.0 0.0   1   0.0 0.0 1847459.0, 1847459.0 -0.6
BXD8/TyJ m 2148453.0 0.0   1   0.0 0.0 2148453.0, 2148453.0 -0.46
BXD9/TyJ m 2333447.0 0.0   1   0.0 0.0 2333447.0, 2333447.0 -0.37
BXH10/TyJ m 1227761.0 0.0   1   0.0 0.0 1227761.0, 1227761.0 -0.88
BXH19/TyJ m 4031501.0 0.0   1   0.0 0.0 4031501.0, 4031501.0 0.41
BXH20/KccJ m 1521374.0 0.0   1   0.0 0.0 1521374.0, 1521374.0 -0.75
BXH22/KccJ m 1623082.0 0.0   1   0.0 0.0 1623082.0, 1623082.0 -0.7
BXH2/TyJ m 1266106.0 0.0   1   0.0 0.0 1266106.0, 1266106.0 -0.87
BXH4/TyJ m 1110809.0 953496.0   2   674223.0 0.858 436585.0, 1785032.0 -0.94
BXH6/TyJ m 3896072.0 0.0   1   0.0 0.0 3896072.0, 3896072.0 0.35
BXH7/TyJ m 862938.0 0.0   1   0.0 0.0 862938.0, 862938.0 -1.05
BXH8/TyJ m 4892592.0 0.0   1   0.0 0.0 4892592.0, 4892592.0 0.81
BXH9/TyJ m 11397646.0 0.0   1   0.0 0.0 11397646.0, 11397646.0 3.81
C3H/HeJ m 5874652.0 2661365.0   2   1881869.0 0.453 3992782.0, 7756521.0 1.26
C57BL/6J m 3800253.0 2705807.0   5 1210074.0 0.712 2170560.0, 8614431.0 0.3
C57L/J m 1639926.0 0.0   1   0.0 0.0 1639926.0, 1639926.0 -0.69
C58/J m 1787760.0 0.0   1   0.0 0.0 1787760.0, 1787760.0 -0.63
CAST/EiJ m 4287488.0 0.0   1   0.0 0.0 4287488.0, 4287488.0 0.53
CBA/J m 1571902.0 0.0   1   0.0 0.0 1571902.0, 1571902.0 -0.73
CE/J m 1011102.0 0.0   1   0.0 0.0 1011102.0, 1011102.0 -0.98
CXB11/HiAJ m 2929697.0 1057989.0   2   748111.0 0.361 2181586.0, 3677808.0 -0.1
CXB12/HiAJ m 3202358.0 899064.0   2   635734.0 0.281 2566624.0, 3838092.0 0.03
CXB13/HiAJ m 2809106.0 1466961.0   3 846950.0 0.522 1115514.0, 3683907.0 -0.15
CXB1/ByJ m 4314901.0 1012007.0   3 584282.0 0.235 3372157.0, 5384256.0 0.54
CXB2/ByJ m 1033341.0 471333.0   3 272124.0 0.456 530366.0, 1464875.0 -0.97
CXB3/ByJ m 3417652.0 1827522.0   2   1292253.0 0.535 2125399.0, 4709906.0 0.13
CXB4/ByJ m 3129269.0 688124.0   2   486577.0 0.22 2642692.0, 3615846.0 -0.01
CXB6/ByJ m 2467808.0 1410732.0   3 814486.0 0.572 918977.0, 3679265.0 -0.31
CXB7/ByJ m 3459628.0 1908160.0   2   1349273.0 0.552 2110356.0, 4808901.0 0.15
CXB8/HiAJ m 2941300.0 726486.0   3 419437.0 0.247 2453584.0, 3776244.0 -0.09
CXB9/HiAJ m 2354910.0 219966.0   3 126997.0 0.0934 2102061.0, 2502202.0 -0.36
DBA/2J m 1962458.0 809481.0   4 404741.0 0.412 865583.0, 2596836.0 -0.54
FVB/NJ m 5483354.0 0.0   1   0.0 0.0 5483354.0, 5483354.0 1.08
I/LnJ m 5386148.0 0.0   1   0.0 0.0 5386148.0, 5386148.0 1.04
KK/HlJ m 7462432.0 0.0   1   0.0 0.0 7462432.0, 7462432.0 2.0
LG/J m 10622131.0 0.0   1   0.0 0.0 10622131.0, 10622131.0 3.45
LP/J m 4419704.0 0.0   1   0.0 0.0 4419704.0, 4419704.0 0.59
MA/MyJ m 5304912.0 0.0   1   0.0 0.0 5304912.0, 5304912.0 1.0
NOD/ShiLtJ m 967142.0 0.0   1   0.0 0.0 967142.0, 967142.0 -1.0
NON/ShiLtJ m 8558423.0 0.0   1   0.0 0.0 8558423.0, 8558423.0 2.5
NZW/LacJ m 1351554.0 0.0   1   0.0 0.0 1351554.0, 1351554.0 -0.83
PL/J m 2474790.0 0.0   1   0.0 0.0 2474790.0, 2474790.0 -0.31
RIIIS/J m 2749071.0 0.0   1   0.0 0.0 2749071.0, 2749071.0 -0.18
SEA/GnJ m 2046882.0 0.0   1   0.0 0.0 2046882.0, 2046882.0 -0.51
SJL/J m 3440399.0 0.0   1   0.0 0.0 3440399.0, 3440399.0 0.14
SM/J m 2239470.0 0.0   1   0.0 0.0 2239470.0, 2239470.0 -0.42
SWR/J m 3816636.0 0.0   1   0.0 0.0 3816636.0, 3816636.0 0.31


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
A/J m 2446689.15 1110171.4345 4702828.9521 190549.3479
AXB19b/PgnJ m 4998018.15 1110171.4345 7254157.9521 2741878.3479
AXB24/PgnJ m 1878328.35 1110171.4345 4134468.1521 0.0
BALB/cJ m 6416072.8333 906451.1805 8258203.2678 4573942.3988
BXA16/PgnJ m 1471428.8 1110171.4345 3727568.6021 0.0
BXD19/TyJ m 4088725.5 1110171.4345 6344865.3021 1832585.6979
BXD28/TyJ m 1365277.35 1110171.4345 3621417.1521 0.0
BXH4/TyJ m 1110808.6 1110171.4345 3366948.4021 0.0
C3H/HeJ m 5874651.75 1110171.4345 8130791.5521 3618511.9479
C57BL/6J m 3800253.36 702134.0652 5227161.4589 2373345.2611
CXB11/HiAJ m 2929696.8 1110171.4345 5185836.6021 673556.9979
CXB12/HiAJ m 3202358.15 1110171.4345 5458497.9521 946218.3479
CXB13/HiAJ m 2809106.1667 906451.1805 4651236.6012 966975.7322
CXB1/ByJ m 4314900.6 906451.1805 6157031.0345 2472770.1655
CXB2/ByJ m 1033341.4333 906451.1805 2875471.8678 0.0
CXB3/ByJ m 3417652.25 1110171.4345 5673792.0521 1161512.4479
CXB4/ByJ m 3129269.3 1110171.4345 5385409.1021 873129.4979
CXB6/ByJ m 2467807.9 906451.1805 4309938.3345 625677.4655
CXB7/ByJ m 3459628.25 1110171.4345 5715768.0521 1203488.4479
CXB8/HiAJ m 2941300.2667 906451.1805 4783430.7012 1099169.8322
CXB9/HiAJ m 2354909.6667 906451.1805 4197040.1012 512779.2322
DBA/2J m 1962458.35 785009.7496 3557790.1034 367126.5966




  GWAS USING LINEAR MIXED MODELS