Phenotype measure:   HMDPpheno5   pct_GRA

ID, description, units MPD:48937   pct_GRA   granulocyte differential (GRA; percentage of total viable WBC)   [%]
Data set, strains HMDPpheno5   HMDP w/par   79 strains     sex: m     age: 16wks
Procedure complete blood count
Ontology mappings

  STRAIN COMPARISON PLOT
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HMDPpheno5 - granulocyte differential (GRA; percentage of total viable WBC)



  MEASURE SUMMARY
Measure Summary Male
Number of strains tested79 strains
Mean of the strain means24.2   %
Median of the strain means24.0   %
SD of the strain means± 4.28
Coefficient of variation (CV)0.177
Min–max range of strain means16.4   –   35.8   %
Mean sample size per strain2.7   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
strain 77 3521.7754 45.7373 1.5754 0.01
Residuals 142 4122.4757 29.0315


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
Strain Sex Mean SD N mice SEM CV Min, Max Z score
A/J m 28.1 3.11   2   2.2 0.111 25.9, 30.3 0.92
AXB10/PgnJ m 26.1 1.7   2   1.2 0.065 24.9, 27.3 0.45
AXB12/PgnJ m 21.4 4.17   2   2.95 0.194 18.5, 24.4 -0.65
AXB13/PgnJ m 16.6 3.46   2   2.45 0.209 14.1, 19.0 -1.77
AXB15/PgnJ m 26.4 3.18   2   2.25 0.121 24.1, 28.6 0.52
AXB19b/PgnJ m 21.5 9.0   4 4.5 0.418 11.7, 32.8 -0.62
AXB19/PgnJ m 18.1 1.2   2   0.85 0.0662 17.3, 19.0 -1.42
AXB23/PgnJ m 21.1 4.88   2   3.45 0.232 17.6, 24.5 -0.72
AXB2/PgnJ m 27.9 20.5   2   14.5 0.735 13.4, 42.4 0.87
AXB5/PgnJ m 22.9 5.02   2   3.55 0.22 19.3, 26.4 -0.3
AXB6/PgnJ m 20.1 1.77   2   1.25 0.0877 18.9, 21.4 -0.95
AXB8/PgnJ m 21.1 1.98   2   1.4 0.0938 19.7, 22.5 -0.72
BALB/cJ m 25.4 0.495   2   0.35 0.0195 25.0, 25.7 0.29
BTBR T+ Itpr3tf/J m 23.1 0.354   2   0.25 0.0153 22.9, 23.4 -0.25
BXA11/PgnJ m 23.8 0.354   2   0.25 0.0149 23.5, 24.0 -0.09
BXA12/PgnJ m 22.0 2.83   2   2.0 0.129 20.0, 24.0 -0.51
BXA13/PgnJ m 20.5 4.24   2   3.0 0.207 17.5, 23.5 -0.86
BXA14/PgnJ m 24.4 2.26   2   1.6 0.0927 22.8, 26.0 0.06
BXA16/PgnJ m 26.3 3.01   3 1.74 0.115 22.8, 28.2 0.5
BXA24/PgnJ m 21.1 2.69   2   1.9 0.127 19.2, 23.0 -0.72
BXA25/PgnJ m 34.4 4.45   2   3.15 0.13 31.2, 37.5 2.39
BXA26/PgnJ m 19.1 7.99   2   5.65 0.419 13.4, 24.7 -1.18
BXA2/PgnJ m 24.0 1.98   2   1.4 0.0825 22.6, 25.4 -0.04
BXA4/PgnJ m 18.3 0.99   2   0.7 0.0541 17.6, 19.0 -1.37
BXA7/PgnJ m 20.9 0.424   2   0.3 0.0203 20.6, 21.2 -0.76
BXA8/PgnJ m 26.1 1.34   2   0.95 0.0514 25.2, 27.1 0.45
BXD12/TyJ m 32.1 3.96   2   2.8 0.123 29.3, 34.9 1.86
BXD13/TyJ m 19.8 1.27   2   0.9 0.0643 18.9, 20.7 -1.02
BXD14/TyJ m 24.8 2.26   2   1.6 0.0912 23.2, 26.4 0.15
BXD15/TyJ m 18.5 0.0   2   0.0 0.0 18.5, 18.5 -1.32
BXD19/TyJ m 28.3 3.49   4 1.74 0.123 23.1, 30.2 0.97
BXD22/TyJ m 19.4 0.707   2   0.5 0.0364 18.9, 19.9 -1.11
BXD24/TyJ m 21.6 3.96   2   2.8 0.183 18.8, 24.4 -0.6
BXD24/TyJ-Cep290rd16/J m 24.9 1.27   2   0.9 0.0511 24.0, 25.8 0.17
BXD28/TyJ m 19.0 1.56   2   1.1 0.0819 17.9, 20.1 -1.21
BXD29-Tlr4lps-2J/J m 27.9 0.495   2   0.35 0.0178 27.5, 28.2 0.87
BXD2/TyJ m 23.8 4.81   2   3.4 0.202 20.4, 27.2 -0.09
BXD33/TyJ m 25.4 2.12   2   1.5 0.0835 23.9, 26.9 0.29
BXD34/TyJ m 25.6 2.76   2   1.95 0.108 23.7, 27.6 0.34
BXD40/TyJ m 21.8 1.63   2   1.15 0.0748 20.6, 22.9 -0.55
BXD42/TyJ m 25.4 0.141   2   0.1 0.00557 25.3, 25.5 0.29
BXD5/TyJ m 25.6 4.38   2   3.1 0.171 22.5, 28.7 0.34
BXD6/TyJ m 21.8 0.849   2   0.6 0.0389 21.2, 22.4 -0.55
BXD9/TyJ m 16.4 1.7   2   1.2 0.103 15.2, 17.6 -1.82
BXH19/TyJ m 27.1 3.11   2   2.2 0.115 24.9, 29.3 0.69
BXH20/KccJ m 26.8 4.03   2   2.85 0.151 23.9, 29.6 0.62
BXH2/TyJ m 35.4 2.55   2   1.8 0.0719 33.6, 37.2 2.63
BXH4/TyJ m 26.6 1.48   2   1.05 0.0559 25.5, 27.6 0.57
BXH6/TyJ m 28.1 1.06   2   0.75 0.0377 27.4, 28.9 0.92
BXH7/TyJ m 32.1 1.41   2   1.0 0.0441 31.1, 33.1 1.86
BXH8/TyJ m 25.1 1.56   2   1.1 0.062 24.0, 26.2 0.22
BXH9/TyJ m 26.6 1.7   2   1.2 0.0638 25.4, 27.8 0.57
C57BL/6J m 24.3 3.19   3 1.84 0.131 20.7, 26.7 0.03
C57L/J m 22.0 3.68   2   2.6 0.167 19.4, 24.6 -0.51
C58/J m 27.1 2.47   2   1.75 0.0915 25.3, 28.8 0.69
CAST/EiJ m 27.2 15.8   2   11.2 0.582 16.0, 38.4 0.71
CE/J m 26.8 3.32   2   2.35 0.124 24.4, 29.1 0.62
CXB11/HiAJ m 21.4 3.29   8 1.16 0.154 17.3, 25.6 -0.65
CXB12/HiAJ m 18.2 3.89   8 1.37 0.214 10.4, 22.8 -1.4
CXB13/HiAJ m 23.0 5.58   8 1.97 0.243 16.4, 34.2 -0.27
CXB1/ByJ m 18.2 4.53   8 1.6 0.249 13.4, 27.0 -1.4
CXB2/ByJ m 22.6 5.45   6 2.22 0.241 14.5, 28.8 -0.37
CXB3/ByJ m 24.5 4.44   9 1.48 0.181 16.5, 30.6 0.08
CXB4/ByJ m 20.3 8.22   8 2.9 0.404 9.9, 34.7 -0.9
CXB6/ByJ m 29.0 11.1   7 4.2 0.383 15.7, 48.4 1.13
CXB7/ByJ m 26.5 2.74   7 1.04 0.103 22.8, 29.9 0.55
CXB8/HiAJ m 22.0 6.33   5 2.83 0.288 14.3, 31.7 -0.51
CXB9/HiAJ m 22.2 8.13   6 3.32 0.366 15.4, 36.7 -0.46
DBA/2J m 26.6 1.98   2   1.4 0.0744 25.2, 28.0 0.57
FVB/NJ m 28.8 3.25   2   2.3 0.113 26.5, 31.1 1.08
KK/HlJ m 35.8 4.38   2   3.1 0.122 32.7, 38.9 2.72
LG/J m 29.3 5.8   2   4.1 0.198 25.2, 33.4 1.2
LP/J m 24.0 1.2   2   0.85 0.0502 23.1, 24.8 -0.04
MA/MyJ m 22.2 1.13   2   0.8 0.051 21.4, 23.0 -0.46
NZW/LacJ m 16.7 0.0   1   0.0 0.0 16.7, 16.7 -1.75
PL/J m 26.8 4.67   2   3.3 0.174 23.5, 30.1 0.62
RIIIS/J m 32.0 2.97   2   2.1 0.0928 29.9, 34.1 1.83
SEA/GnJ m 22.0 3.75   2   2.65 0.171 19.3, 24.6 -0.51
SJL/J m 18.9 1.63   2   1.15 0.0863 17.7, 20.0 -1.23


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
A/J m 28.1 3.81 35.6316 20.5684
AXB10/PgnJ m 26.1 3.81 33.6316 18.5684
AXB12/PgnJ m 21.45 3.81 28.9816 13.9184
AXB13/PgnJ m 16.55 3.81 24.0816 9.0184
AXB15/PgnJ m 26.35 3.81 33.8816 18.8184
AXB19b/PgnJ m 21.55 2.694 26.8756 16.2244
AXB19/PgnJ m 18.15 3.81 25.6816 10.6184
AXB23/PgnJ m 21.05 3.81 28.5816 13.5184
AXB2/PgnJ m 27.9 3.81 35.4316 20.3684
AXB5/PgnJ m 22.85 3.81 30.3816 15.3184
AXB6/PgnJ m 20.15 3.81 27.6816 12.6184
AXB8/PgnJ m 21.1 3.81 28.6316 13.5684
BALB/cJ m 25.35 3.81 32.8816 17.8184
BTBR T+ Itpr3tf/J m 23.15 3.81 30.6816 15.6184
BXA11/PgnJ m 23.75 3.81 31.2816 16.2184
BXA12/PgnJ m 22.0 3.81 29.5316 14.4684
BXA13/PgnJ m 20.5 3.81 28.0316 12.9684
BXA14/PgnJ m 24.4 3.81 31.9316 16.8684
BXA16/PgnJ m 26.2667 3.1108 32.4162 20.1172
BXA24/PgnJ m 21.1 3.81 28.6316 13.5684
BXA25/PgnJ m 34.35 3.81 41.8816 26.8184
BXA26/PgnJ m 19.05 3.81 26.5816 11.5184
BXA2/PgnJ m 24.0 3.81 31.5316 16.4684
BXA4/PgnJ m 18.3 3.81 25.8316 10.7684
BXA7/PgnJ m 20.9 3.81 28.4316 13.3684
BXA8/PgnJ m 26.15 3.81 33.6816 18.6184
BXD12/TyJ m 32.1 3.81 39.6316 24.5684
BXD13/TyJ m 19.8 3.81 27.3316 12.2684
BXD14/TyJ m 24.8 3.81 32.3316 17.2684
BXD15/TyJ m 18.5 3.81 26.0316 10.9684
BXD19/TyJ m 28.325 2.694 33.6506 22.9994
BXD22/TyJ m 19.4 3.81 26.9316 11.8684
BXD24/TyJ m 21.6 3.81 29.1316 14.0684
BXD24/TyJ-Cep290rd16/J m 24.9 3.81 32.4316 17.3684
BXD28/TyJ m 19.0 3.81 26.5316 11.4684
BXD29-Tlr4lps-2J/J m 27.85 3.81 35.3816 20.3184
BXD2/TyJ m 23.8 3.81 31.3316 16.2684
BXD33/TyJ m 25.4 3.81 32.9316 17.8684
BXD34/TyJ m 25.65 3.81 33.1816 18.1184
BXD40/TyJ m 21.75 3.81 29.2816 14.2184
BXD42/TyJ m 25.4 3.81 32.9316 17.8684
BXD5/TyJ m 25.6 3.81 33.1316 18.0684
BXD6/TyJ m 21.8 3.81 29.3316 14.2684
BXD9/TyJ m 16.4 3.81 23.9316 8.8684
BXH19/TyJ m 27.1 3.81 34.6316 19.5684
BXH20/KccJ m 26.75 3.81 34.2816 19.2184
BXH2/TyJ m 35.4 3.81 42.9316 27.8684
BXH4/TyJ m 26.55 3.81 34.0816 19.0184
BXH6/TyJ m 28.15 3.81 35.6816 20.6184
BXH7/TyJ m 32.1 3.81 39.6316 24.5684
BXH8/TyJ m 25.1 3.81 32.6316 17.5684
BXH9/TyJ m 26.6 3.81 34.1316 19.0684
C57BL/6J m 24.3333 3.1108 30.4828 18.1838
C57L/J m 22.0 3.81 29.5316 14.4684
C58/J m 27.05 3.81 34.5816 19.5184
CAST/EiJ m 27.2 3.81 34.7316 19.6684
CE/J m 26.75 3.81 34.2816 19.2184
CXB11/HiAJ m 21.3625 1.905 25.1283 17.5967
CXB12/HiAJ m 18.15 1.905 21.9158 14.3842
CXB13/HiAJ m 22.95 1.905 26.7158 19.1842
CXB1/ByJ m 18.2125 1.905 21.9783 14.4467
CXB2/ByJ m 22.5667 2.1997 26.915 18.2183
CXB3/ByJ m 24.5222 1.796 28.0726 20.9718
CXB4/ByJ m 20.325 1.905 24.0908 16.5592
CXB6/ByJ m 29.0 2.0365 33.0258 24.9742
CXB7/ByJ m 26.5429 2.0365 30.5686 22.5171
CXB8/HiAJ m 22.02 2.4096 26.7834 17.2566
CXB9/HiAJ m 22.2167 2.1997 26.565 17.8683
DBA/2J m 26.6 3.81 34.1316 19.0684
FVB/NJ m 28.8 3.81 36.3316 21.2684
KK/HlJ m 35.8 3.81 43.3316 28.2684
LG/J m 29.3 3.81 36.8316 21.7684
LP/J m 23.95 3.81 31.4816 16.4184
MA/MyJ m 22.2 3.81 29.7316 14.6684
PL/J m 26.8 3.81 34.3316 19.2684
RIIIS/J m 32.0 3.81 39.5316 24.4684
SEA/GnJ m 21.95 3.81 29.4816 14.4184
SJL/J m 18.85 3.81 26.3816 11.3184




  GWAS USING LINEAR MIXED MODELS