Phenotype measure:   HMDPpheno5   pct_LYM

ID, description, units MPD:48913   pct_LYM   lymphocyte differential (LYM; percentage of viable WBC)   [%]
Data set, strains HMDPpheno5   HMDP w/par   79 strains     sex: m     age: 16wks
Procedure complete blood count
Ontology mappings

  STRAIN COMPARISON PLOT
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HMDPpheno5 - lymphocyte differential (LYM; percentage of viable WBC)



  MEASURE SUMMARY
Measure Summary Male
Number of strains tested79 strains
Mean of the strain means68.9   %
Median of the strain means68.9   %
SD of the strain means± 5.13
Coefficient of variation (CV)0.0744
Min–max range of strain means54.2   –   78.8   %
Mean sample size per strain2.7   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
strain 77 5079.3665 65.9658 1.8648 0.0007
Residuals 142 5023.2613 35.3751


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
Strain Sex Mean SD N mice SEM CV Min, Max Z score
A/J m 62.4 3.25   2   2.3 0.0521 60.1, 64.7 -1.27
AXB10/PgnJ m 68.0 2.26   2   1.6 0.0333 66.4, 69.6 -0.18
AXB12/PgnJ m 72.8 5.52   2   3.9 0.0758 68.9, 76.7 0.76
AXB13/PgnJ m 78.8 5.3   2   3.75 0.0673 75.1, 82.6 1.93
AXB15/PgnJ m 67.7 2.97   2   2.1 0.0439 65.6, 69.8 -0.24
AXB19b/PgnJ m 74.8 8.77   4 4.38 0.117 63.9, 84.7 1.15
AXB19/PgnJ m 76.8 1.06   2   0.75 0.0138 76.1, 77.6 1.54
AXB23/PgnJ m 73.7 4.6   2   3.25 0.0624 70.4, 76.9 0.93
AXB2/PgnJ m 66.0 23.6   2   16.7 0.358 49.3, 82.7 -0.57
AXB5/PgnJ m 70.3 4.53   2   3.2 0.0644 67.1, 73.5 0.27
AXB6/PgnJ m 74.5 2.55   2   1.8 0.0342 72.7, 76.3 1.09
AXB8/PgnJ m 72.5 4.53   2   3.2 0.0624 69.3, 75.7 0.7
BALB/cJ m 69.5 1.06   2   0.75 0.0153 68.7, 70.2 0.11
BTBR T+ Itpr3tf/J m 70.2 0.919   2   0.65 0.0131 69.6, 70.9 0.25
BXA11/PgnJ m 70.7 1.2   2   0.85 0.017 69.8, 71.5 0.35
BXA12/PgnJ m 73.4 3.54   2   2.5 0.0482 70.9, 75.9 0.87
BXA13/PgnJ m 73.7 6.58   2   4.65 0.0893 69.0, 78.3 0.93
BXA14/PgnJ m 68.5 3.89   2   2.75 0.0567 65.8, 71.3 -0.08
BXA16/PgnJ m 67.8 3.57   3 2.06 0.0527 65.2, 71.9 -0.22
BXA24/PgnJ m 72.8 3.61   2   2.55 0.0496 70.2, 75.3 0.76
BXA25/PgnJ m 57.6 4.81   2   3.4 0.0835 54.2, 61.0 -2.21
BXA26/PgnJ m 76.3 9.62   2   6.8 0.126 69.5, 83.1 1.44
BXA2/PgnJ m 70.2 2.19   2   1.55 0.0312 68.6, 71.7 0.25
BXA4/PgnJ m 76.0 0.0707   2   0.05 0.00093 76.0, 76.1 1.38
BXA7/PgnJ m 73.5 1.77   2   1.25 0.0241 72.2, 74.7 0.89
BXA8/PgnJ m 66.1 1.27   2   0.9 0.0193 65.2, 67.0 -0.55
BXD12/TyJ m 60.5 4.03   2   2.85 0.0667 57.6, 63.3 -1.64
BXD13/TyJ m 74.0 1.48   2   1.05 0.0201 72.9, 75.0 0.99
BXD14/TyJ m 68.8 3.32   2   2.35 0.0483 66.4, 71.1 -0.02
BXD15/TyJ m 74.7 0.283   2   0.2 0.00379 74.5, 74.9 1.13
BXD19/TyJ m 64.5 3.7   4 1.85 0.0574 62.1, 69.9 -0.86
BXD22/TyJ m 75.0 2.26   2   1.6 0.0302 73.4, 76.6 1.19
BXD24/TyJ m 71.1 4.38   2   3.1 0.0617 68.0, 74.2 0.43
BXD24/TyJ-Cep290rd16/J m 66.8 1.63   2   1.15 0.0244 65.6, 67.9 -0.41
BXD28/TyJ m 75.5 1.7   2   1.2 0.0225 74.3, 76.7 1.28
BXD29-Tlr4lps-2J/J m 65.0 1.13   2   0.8 0.0174 64.2, 65.8 -0.76
BXD2/TyJ m 65.2 5.23   2   3.7 0.0803 61.5, 68.9 -0.72
BXD33/TyJ m 68.1 2.55   2   1.8 0.0374 66.3, 69.9 -0.16
BXD34/TyJ m 65.7 3.96   2   2.8 0.0603 62.9, 68.5 -0.63
BXD40/TyJ m 72.1 0.424   2   0.3 0.00588 71.8, 72.4 0.62
BXD42/TyJ m 67.5 1.27   2   0.9 0.0189 66.6, 68.4 -0.28
BXD5/TyJ m 67.7 5.09   2   3.6 0.0752 64.1, 71.3 -0.24
BXD6/TyJ m 72.2 1.2   2   0.85 0.0167 71.3, 73.0 0.64
BXD9/TyJ m 77.7 2.33   2   1.65 0.0301 76.0, 79.3 1.71
BXH19/TyJ m 65.9 4.95   2   3.5 0.0751 62.4, 69.4 -0.59
BXH20/KccJ m 66.4 5.09   2   3.6 0.0767 62.8, 70.0 -0.49
BXH2/TyJ m 57.1 0.0   2   0.0 0.0 57.1, 57.1 -2.3
BXH4/TyJ m 63.8 0.849   2   0.6 0.0133 63.2, 64.4 -1.0
BXH6/TyJ m 64.7 1.91   2   1.35 0.0295 63.3, 66.0 -0.82
BXH7/TyJ m 62.0 1.63   2   1.15 0.0262 60.9, 63.2 -1.35
BXH8/TyJ m 68.7 2.12   2   1.5 0.0309 67.2, 70.2 -0.04
BXH9/TyJ m 66.5 2.76   2   1.95 0.0415 64.5, 68.4 -0.47
C57BL/6J m 68.5 4.64   3 2.68 0.0677 64.2, 73.4 -0.08
C57L/J m 71.5 4.81   2   3.4 0.0672 68.1, 74.9 0.5
C58/J m 67.1 3.32   2   2.35 0.0496 64.7, 69.4 -0.35
CAST/EiJ m 63.0 23.3   2   16.4 0.37 46.5, 79.4 -1.15
CE/J m 66.5 2.76   2   1.95 0.0415 64.5, 68.4 -0.47
CXB11/HiAJ m 70.2 3.48   8 1.23 0.0495 65.5, 74.5 0.25
CXB12/HiAJ m 74.2 4.67   8 1.65 0.0629 66.9, 83.2 1.03
CXB13/HiAJ m 69.4 5.93   8 2.1 0.0854 57.1, 75.0 0.09
CXB1/ByJ m 74.0 4.59   8 1.62 0.062 65.0, 79.6 0.99
CXB2/ByJ m 70.1 7.5   6 3.06 0.107 59.5, 81.0 0.23
CXB3/ByJ m 68.4 4.71   9 1.57 0.0689 62.5, 76.4 -0.1
CXB4/ByJ m 70.8 8.58   8 3.03 0.121 56.9, 81.7 0.37
CXB6/ByJ m 60.4 9.94   7 3.76 0.165 41.8, 71.4 -1.66
CXB7/ByJ m 61.6 2.81   7 1.06 0.0456 57.5, 65.6 -1.43
CXB8/HiAJ m 68.9 5.03   5 2.25 0.0731 60.6, 73.8 0.0
CXB9/HiAJ m 71.3 8.88   6 3.62 0.124 56.0, 78.7 0.46
DBA/2J m 66.6 1.91   2   1.35 0.0287 65.2, 67.9 -0.45
FVB/NJ m 63.0 3.68   2   2.6 0.0584 60.4, 65.6 -1.15
KK/HlJ m 54.2 7.0   2   4.95 0.129 49.2, 59.1 -2.87
LG/J m 62.2 9.12   2   6.45 0.147 55.8, 68.7 -1.31
LP/J m 69.1 1.98   2   1.4 0.0287 67.7, 70.5 0.04
MA/MyJ m 70.2 0.636   2   0.45 0.00907 69.7, 70.6 0.25
NZW/LacJ m 77.8 0.0   1   0.0 0.0 77.8, 77.8 1.73
PL/J m 65.7 5.8   2   4.1 0.0883 61.6, 69.8 -0.63
RIIIS/J m 60.3 3.39   2   2.4 0.0563 57.9, 62.7 -1.68
SEA/GnJ m 73.0 3.54   2   2.5 0.0484 70.5, 75.5 0.8
SJL/J m 74.6 3.39   2   2.4 0.0455 72.2, 77.0 1.11


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
A/J m 62.4 4.2057 70.7138 54.0862
AXB10/PgnJ m 68.0 4.2057 76.3138 59.6862
AXB12/PgnJ m 72.8 4.2057 81.1138 64.4862
AXB13/PgnJ m 78.85 4.2057 87.1638 70.5362
AXB15/PgnJ m 67.7 4.2057 76.0138 59.3862
AXB19b/PgnJ m 74.75 2.9738 80.6287 68.8713
AXB19/PgnJ m 76.85 4.2057 85.1638 68.5362
AXB23/PgnJ m 73.65 4.2057 81.9638 65.3362
AXB2/PgnJ m 66.0 4.2057 74.3138 57.6862
AXB5/PgnJ m 70.3 4.2057 78.6138 61.9862
AXB6/PgnJ m 74.5 4.2057 82.8138 66.1862
AXB8/PgnJ m 72.5 4.2057 80.8138 64.1862
BALB/cJ m 69.45 4.2057 77.7638 61.1362
BTBR T+ Itpr3tf/J m 70.25 4.2057 78.5638 61.9362
BXA11/PgnJ m 70.65 4.2057 78.9638 62.3362
BXA12/PgnJ m 73.4 4.2057 81.7138 65.0862
BXA13/PgnJ m 73.65 4.2057 81.9638 65.3362
BXA14/PgnJ m 68.55 4.2057 76.8638 60.2362
BXA16/PgnJ m 67.8333 3.4339 74.6215 61.0452
BXA24/PgnJ m 72.75 4.2057 81.0638 64.4362
BXA25/PgnJ m 57.6 4.2057 65.9138 49.2862
BXA26/PgnJ m 76.3 4.2057 84.6138 67.9862
BXA2/PgnJ m 70.15 4.2057 78.4638 61.8362
BXA4/PgnJ m 76.05 4.2057 84.3638 67.7362
BXA7/PgnJ m 73.45 4.2057 81.7638 65.1362
BXA8/PgnJ m 66.1 4.2057 74.4138 57.7862
BXD12/TyJ m 60.45 4.2057 68.7638 52.1362
BXD13/TyJ m 73.95 4.2057 82.2638 65.6362
BXD14/TyJ m 68.75 4.2057 77.0638 60.4362
BXD15/TyJ m 74.7 4.2057 83.0138 66.3862
BXD19/TyJ m 64.45 2.9738 70.3287 58.5713
BXD22/TyJ m 75.0 4.2057 83.3138 66.6862
BXD24/TyJ m 71.1 4.2057 79.4138 62.7862
BXD24/TyJ-Cep290rd16/J m 66.75 4.2057 75.0638 58.4362
BXD28/TyJ m 75.5 4.2057 83.8138 67.1862
BXD29-Tlr4lps-2J/J m 65.0 4.2057 73.3138 56.6862
BXD2/TyJ m 65.2 4.2057 73.5138 56.8862
BXD33/TyJ m 68.1 4.2057 76.4138 59.7862
BXD34/TyJ m 65.7 4.2057 74.0138 57.3862
BXD40/TyJ m 72.1 4.2057 80.4138 63.7862
BXD42/TyJ m 67.5 4.2057 75.8138 59.1862
BXD5/TyJ m 67.7 4.2057 76.0138 59.3862
BXD6/TyJ m 72.15 4.2057 80.4638 63.8362
BXD9/TyJ m 77.65 4.2057 85.9638 69.3362
BXH19/TyJ m 65.9 4.2057 74.2138 57.5862
BXH20/KccJ m 66.4 4.2057 74.7138 58.0862
BXH2/TyJ m 57.1 4.2057 65.4138 48.7862
BXH4/TyJ m 63.8 4.2057 72.1138 55.4862
BXH6/TyJ m 64.65 4.2057 72.9638 56.3362
BXH7/TyJ m 62.05 4.2057 70.3638 53.7362
BXH8/TyJ m 68.7 4.2057 77.0138 60.3862
BXH9/TyJ m 66.45 4.2057 74.7638 58.1362
C57BL/6J m 68.4667 3.4339 75.2548 61.6785
C57L/J m 71.5 4.2057 79.8138 63.1862
C58/J m 67.05 4.2057 75.3638 58.7362
CAST/EiJ m 62.95 4.2057 71.2638 54.6362
CE/J m 66.45 4.2057 74.7638 58.1362
CXB11/HiAJ m 70.15 2.1028 74.3069 65.9931
CXB12/HiAJ m 74.2125 2.1028 78.3694 70.0556
CXB13/HiAJ m 69.4125 2.1028 73.5694 65.2556
CXB1/ByJ m 73.975 2.1028 78.1319 69.8181
CXB2/ByJ m 70.05 2.4281 74.85 65.25
CXB3/ByJ m 68.3778 1.9826 72.2969 64.4586
CXB4/ByJ m 70.75 2.1028 74.9069 66.5931
CXB6/ByJ m 60.3714 2.248 64.8153 55.9275
CXB7/ByJ m 61.5714 2.248 66.0153 57.1275
CXB8/HiAJ m 68.88 2.6599 74.1381 63.6219
CXB9/HiAJ m 71.3167 2.4281 76.1166 66.5167
DBA/2J m 66.55 4.2057 74.8638 58.2362
FVB/NJ m 63.0 4.2057 71.3138 54.6862
KK/HlJ m 54.15 4.2057 62.4638 45.8362
LG/J m 62.25 4.2057 70.5638 53.9362
LP/J m 69.1 4.2057 77.4138 60.7862
MA/MyJ m 70.15 4.2057 78.4638 61.8362
PL/J m 65.7 4.2057 74.0138 57.3862
RIIIS/J m 60.3 4.2057 68.6138 51.9862
SEA/GnJ m 73.0 4.2057 81.3138 64.6862
SJL/J m 74.6 4.2057 82.9138 66.2862




  GENOME-WIDE ASSOCIATION (GWAS) STATIC PLOT
Plot generated with EMMA / pyLMM using 132K SNP array. Click on plot to view at larger size.