Project measure / variable:   HMDPpheno5   WBC

ID, description, units MPD:48901   WBC   white blood cell count (WBC; units per volume x 103)   [n/µL]  
Data set, strains HMDPpheno5   HMDP w/par   79 strains     sex: m     age: 16wks
Procedure complete blood count
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  STRAIN COMPARISON PLOT
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HMDPpheno5 - white blood cell count (WBC; units per volume x 103)



  MEASURE SUMMARY
Measure Summary Male
Number of strains tested79 strains
Mean of the strain means3.53   n/µL
Median of the strain means3.15   n/µL
SD of the strain means± 1.83
Coefficient of variation (CV)0.518
Min–max range of strain means0.650   –   9.77   n/µL
Mean sample size per strain2.7   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
strain 77 1132.8579 14.7124 3.1925 < 0.0001
Residuals 142 654.4005 4.6085


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
Select table page:
Strain Sex Mean SD N mice SEM CV Min, Max Z score
A/J m 1.45 0.354   2   0.25 0.244 1.2, 1.7 -1.14
AXB10/PgnJ m 1.25 0.354   2   0.25 0.283 1.0, 1.5 -1.25
AXB12/PgnJ m 2.15 1.63   2   1.15 0.756 1.0, 3.3 -0.76
AXB13/PgnJ m 3.05 1.63   2   1.15 0.533 1.9, 4.2 -0.26
AXB15/PgnJ m 1.2 0.849   2   0.6 0.707 0.6, 1.8 -1.27
AXB19b/PgnJ m 2.8 2.45   4 1.23 0.875 0.7, 5.8 -0.4
AXB19/PgnJ m 2.65 1.06   2   0.75 0.4 1.9, 3.4 -0.48
AXB23/PgnJ m 1.8 0.566   2   0.4 0.314 1.4, 2.2 -0.95
AXB2/PgnJ m 1.25 1.06   2   0.75 0.849 0.5, 2.0 -1.25
AXB5/PgnJ m 3.75 1.48   2   1.05 0.396 2.7, 4.8 0.12
AXB6/PgnJ m 6.6 0.849   2   0.6 0.129 6.0, 7.2 1.67
AXB8/PgnJ m 3.45 0.919   2   0.65 0.266 2.8, 4.1 -0.05
BALB/cJ m 1.75 0.919   2   0.65 0.525 1.1, 2.4 -0.97
BTBR T+ Itpr3tf/J m 4.7 1.13   2   0.8 0.241 3.9, 5.5 0.64
BXA11/PgnJ m 2.75 0.495   2   0.35 0.18 2.4, 3.1 -0.43
BXA12/PgnJ m 6.35 5.02   2   3.55 0.791 2.8, 9.9 1.54
BXA13/PgnJ m 2.2 0.0   2   0.0 0.0 2.2, 2.2 -0.73
BXA14/PgnJ m 1.9 0.707   2   0.5 0.372 1.4, 2.4 -0.89
BXA16/PgnJ m 3.3 2.45   3 1.42 0.743 0.9, 5.8 -0.13
BXA24/PgnJ m 2.0 1.7   2   1.2 0.849 0.8, 3.2 -0.84
BXA25/PgnJ m 1.7 1.13   2   0.8 0.666 0.9, 2.5 -1.0
BXA26/PgnJ m 3.1 2.12   2   1.5 0.684 1.6, 4.6 -0.24
BXA2/PgnJ m 2.35 0.778   2   0.55 0.331 1.8, 2.9 -0.65
BXA4/PgnJ m 0.65 0.212   2   0.15 0.326 0.5, 0.8 -1.58
BXA7/PgnJ m 2.6 1.84   2   1.3 0.707 1.3, 3.9 -0.51
BXA8/PgnJ m 1.8 0.141   2   0.1 0.0786 1.7, 1.9 -0.95
BXD12/TyJ m 3.6 0.141   2   0.1 0.0393 3.5, 3.7 0.04
BXD13/TyJ m 3.7 2.97   2   2.1 0.803 1.6, 5.8 0.09
BXD14/TyJ m 1.9 0.849   2   0.6 0.447 1.3, 2.5 -0.89
BXD15/TyJ m 3.3 0.424   2   0.3 0.129 3.0, 3.6 -0.13
BXD19/TyJ m 3.17 1.23   4 0.614 0.387 2.0, 4.8 -0.2
BXD22/TyJ m 4.6 2.12   2   1.5 0.461 3.1, 6.1 0.58
BXD24/TyJ m 3.85 1.34   2   0.95 0.349 2.9, 4.8 0.17
BXD24/TyJ-Cep290rd16/J m 2.4 0.141   2   0.1 0.0589 2.3, 2.5 -0.62
BXD28/TyJ m 4.4 1.7   2   1.2 0.386 3.2, 5.6 0.47
BXD29-Tlr4lps-2J/J m 3.45 1.91   2   1.35 0.553 2.1, 4.8 -0.05
BXD2/TyJ m 1.6 0.707   2   0.5 0.442 1.1, 2.1 -1.06
BXD33/TyJ m 4.1 0.566   2   0.4 0.138 3.7, 4.5 0.31
BXD34/TyJ m 2.5 1.84   2   1.3 0.735 1.2, 3.8 -0.56
BXD40/TyJ m 2.1 1.98   2   1.4 0.943 0.7, 3.5 -0.78
BXD42/TyJ m 5.95 2.19   2   1.55 0.368 4.4, 7.5 1.32
BXD5/TyJ m 3.05 1.34   2   0.95 0.44 2.1, 4.0 -0.26
BXD6/TyJ m 3.35 1.06   2   0.75 0.317 2.6, 4.1 -0.1
BXD9/TyJ m 5.75 3.46   2   2.45 0.603 3.3, 8.2 1.21
BXH19/TyJ m 1.65 0.212   2   0.15 0.129 1.5, 1.8 -1.03
BXH20/KccJ m 3.0 0.424   2   0.3 0.141 2.7, 3.3 -0.29
BXH2/TyJ m 2.5 1.84   2   1.3 0.735 1.2, 3.8 -0.56
BXH4/TyJ m 4.4 3.25   2   2.3 0.739 2.1, 6.7 0.47
BXH6/TyJ m 2.75 0.778   2   0.55 0.283 2.2, 3.3 -0.43
BXH7/TyJ m 1.3 0.424   2   0.3 0.326 1.0, 1.6 -1.22
BXH8/TyJ m 2.4 0.283   2   0.2 0.118 2.2, 2.6 -0.62
BXH9/TyJ m 3.65 1.06   2   0.75 0.291 2.9, 4.4 0.06
C57BL/6J m 2.47 2.37   3 1.37 0.96 1.1, 5.2 -0.58
C57L/J m 3.15 1.2   2   0.85 0.382 2.3, 4.0 -0.21
C58/J m 3.5 2.12   2   1.5 0.606 2.0, 5.0 -0.02
CAST/EiJ m 4.95 0.354   2   0.25 0.0714 4.7, 5.2 0.77
CE/J m 3.0 0.849   2   0.6 0.283 2.4, 3.6 -0.29
CXB11/HiAJ m 9.0 3.64   8 1.29 0.405 1.5, 12.7 2.98
CXB12/HiAJ m 9.77 1.96   8 0.694 0.201 7.4, 12.3 3.4
CXB13/HiAJ m 7.56 3.74   8 1.32 0.494 1.5, 11.4 2.2
CXB1/ByJ m 6.49 2.98   8 1.05 0.459 2.1, 9.8 1.61
CXB2/ByJ m 3.7 1.06   6 0.434 0.288 1.8, 4.8 0.09
CXB3/ByJ m 4.61 1.45   9 0.483 0.314 3.1, 7.8 0.59
CXB4/ByJ m 7.31 1.78   8 0.628 0.243 5.0, 10.5 2.06
CXB6/ByJ m 4.09 1.29   7 0.489 0.316 2.5, 6.0 0.3
CXB7/ByJ m 6.83 2.14   7 0.81 0.314 4.4, 10.4 1.8
CXB8/HiAJ m 4.8 1.56   5 0.698 0.325 2.9, 6.2 0.69
CXB9/HiAJ m 6.23 4.48   6 1.83 0.719 1.3, 12.8 1.47
DBA/2J m 4.1 0.99   2   0.7 0.241 3.4, 4.8 0.31
FVB/NJ m 2.55 0.354   2   0.25 0.139 2.3, 2.8 -0.54
KK/HlJ m 1.8 0.141   2   0.1 0.0786 1.7, 1.9 -0.95
LG/J m 4.85 2.47   2   1.75 0.51 3.1, 6.6 0.72
LP/J m 4.75 0.778   2   0.55 0.164 4.2, 5.3 0.66
MA/MyJ m 1.75 0.495   2   0.35 0.283 1.4, 2.1 -0.97
NZW/LacJ m 5.7 0.0   1   0.0 0.0 5.7, 5.7 1.18
PL/J m 3.55 0.0707   2   0.05 0.0199 3.5, 3.6 0.01
RIIIS/J m 2.1 0.141   2   0.1 0.0673 2.0, 2.2 -0.78
SEA/GnJ m 3.1 1.27   2   0.9 0.411 2.2, 4.0 -0.24
SJL/J m 4.55 0.0707   2   0.05 0.0155 4.5, 4.6 0.55


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
A/J m 1.45 1.518 4.4507 0.0
AXB10/PgnJ m 1.25 1.518 4.2507 0.0
AXB12/PgnJ m 2.15 1.518 5.1507 0.0
AXB13/PgnJ m 3.05 1.518 6.0507 0.0493
AXB15/PgnJ m 1.2 1.518 4.2007 0.0
AXB19b/PgnJ m 2.8 1.0734 4.9218 0.6782
AXB19/PgnJ m 2.65 1.518 5.6507 0.0
AXB23/PgnJ m 1.8 1.518 4.8007 0.0
AXB2/PgnJ m 1.25 1.518 4.2507 0.0
AXB5/PgnJ m 3.75 1.518 6.7507 0.7493
AXB6/PgnJ m 6.6 1.518 9.6007 3.5993
AXB8/PgnJ m 3.45 1.518 6.4507 0.4493
BALB/cJ m 1.75 1.518 4.7507 0.0
BTBR T+ Itpr3tf/J m 4.7 1.518 7.7007 1.6993
BXA11/PgnJ m 2.75 1.518 5.7507 0.0
BXA12/PgnJ m 6.35 1.518 9.3507 3.3493
BXA13/PgnJ m 2.2 1.518 5.2007 0.0
BXA14/PgnJ m 1.9 1.518 4.9007 0.0
BXA16/PgnJ m 3.3 1.2394 5.7501 0.8499
BXA24/PgnJ m 2.0 1.518 5.0007 0.0
BXA25/PgnJ m 1.7 1.518 4.7007 0.0
BXA26/PgnJ m 3.1 1.518 6.1007 0.0993
BXA2/PgnJ m 2.35 1.518 5.3507 0.0
BXA4/PgnJ m 0.65 1.518 3.6507 0.0
BXA7/PgnJ m 2.6 1.518 5.6007 0.0
BXA8/PgnJ m 1.8 1.518 4.8007 0.0
BXD12/TyJ m 3.6 1.518 6.6007 0.5993
BXD13/TyJ m 3.7 1.518 6.7007 0.6993
BXD14/TyJ m 1.9 1.518 4.9007 0.0
BXD15/TyJ m 3.3 1.518 6.3007 0.2993
BXD19/TyJ m 3.175 1.0734 5.2968 1.0532
BXD22/TyJ m 4.6 1.518 7.6007 1.5993
BXD24/TyJ m 3.85 1.518 6.8507 0.8493
BXD24/TyJ-Cep290rd16/J m 2.4 1.518 5.4007 0.0
BXD28/TyJ m 4.4 1.518 7.4007 1.3993
BXD29-Tlr4lps-2J/J m 3.45 1.518 6.4507 0.4493
BXD2/TyJ m 1.6 1.518 4.6007 0.0
BXD33/TyJ m 4.1 1.518 7.1007 1.0993
BXD34/TyJ m 2.5 1.518 5.5007 0.0
BXD40/TyJ m 2.1 1.518 5.1007 0.0
BXD42/TyJ m 5.95 1.518 8.9507 2.9493
BXD5/TyJ m 3.05 1.518 6.0507 0.0493
BXD6/TyJ m 3.35 1.518 6.3507 0.3493
BXD9/TyJ m 5.75 1.518 8.7507 2.7493
BXH19/TyJ m 1.65 1.518 4.6507 0.0
BXH20/KccJ m 3.0 1.518 6.0007 0.0
BXH2/TyJ m 2.5 1.518 5.5007 0.0
BXH4/TyJ m 4.4 1.518 7.4007 1.3993
BXH6/TyJ m 2.75 1.518 5.7507 0.0
BXH7/TyJ m 1.3 1.518 4.3007 0.0
BXH8/TyJ m 2.4 1.518 5.4007 0.0
BXH9/TyJ m 3.65 1.518 6.6507 0.6493
C57BL/6J m 2.4667 1.2394 4.9168 0.0166
C57L/J m 3.15 1.518 6.1507 0.1493
C58/J m 3.5 1.518 6.5007 0.4993
CAST/EiJ m 4.95 1.518 7.9507 1.9493
CE/J m 3.0 1.518 6.0007 0.0
CXB11/HiAJ m 9.0 0.759 10.5004 7.4996
CXB12/HiAJ m 9.775 0.759 11.2754 8.2746
CXB13/HiAJ m 7.5625 0.759 9.0629 6.0621
CXB1/ByJ m 6.4875 0.759 7.9879 4.9871
CXB2/ByJ m 3.7 0.8764 5.4325 1.9675
CXB3/ByJ m 4.6111 0.7156 6.0257 3.1966
CXB4/ByJ m 7.3125 0.759 8.8129 5.8121
CXB6/ByJ m 4.0857 0.8114 5.6897 2.4818
CXB7/ByJ m 6.8286 0.8114 8.4325 5.2246
CXB8/HiAJ m 4.8 0.96 6.6978 2.9022
CXB9/HiAJ m 6.2333 0.8764 7.9658 4.5009
DBA/2J m 4.1 1.518 7.1007 1.0993
FVB/NJ m 2.55 1.518 5.5507 0.0
KK/HlJ m 1.8 1.518 4.8007 0.0
LG/J m 4.85 1.518 7.8507 1.8493
LP/J m 4.75 1.518 7.7507 1.7493
MA/MyJ m 1.75 1.518 4.7507 0.0
PL/J m 3.55 1.518 6.5507 0.5493
RIIIS/J m 2.1 1.518 5.1007 0.0
SEA/GnJ m 3.1 1.518 6.1007 0.0993
SJL/J m 4.55 1.518 7.5507 1.5493




  GWAS USING LINEAR MIXED MODELS