Project measure / variable:   HMDPpheno2   CHOL_tot

ID, description, units MPD:46404   CHOL_tot   total cholesterol (plasma CHOL)   [mg/dL]  
Data set, strains HMDPpheno2   HMDP w/par   99 strains     sex: m     age: 16wks
Procedure lipid profile
Ontology mappings

  •   Or, add this measure to your collection.
       
  •     no folder
  •     put it in new folder  

  STRAIN COMPARISON PLOT
Dimensions Width:   px    Height:   px
Download Plot   
Visualization Options

HMDPpheno2 - total cholesterol (plasma CHOL)



  MEASURE SUMMARY
Measure Summary Male
Number of strains tested99 strains
Mean of the strain means116   mg/dL
Median of the strain means111   mg/dL
SD of the strain means± 36.6
Coefficient of variation (CV)0.315
Min–max range of strain means65.8   –   268   mg/dL
Mean sample size per strain6.9   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
strain 97 927887.708 9565.8527 29.148 < 0.0001
Residuals 586 192314.963 328.1825


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
Select table page:
Strain Sex Mean SD N mice SEM CV Min, Max Z score
129X1/SvJ m 159.0 10.6   10 3.34 0.0665 145.0, 179.0 1.18
A/J m 98.6 15.1   8 5.33 0.153 80.0, 119.0 -0.47
AKR/J m 114.0 11.4   10 3.59 0.0993 90.0, 128.0 -0.05
AXB10/PgnJ m 67.2 6.26   5 2.8 0.0932 57.0, 73.0 -1.33
AXB12/PgnJ m 102.0 9.69   6 3.96 0.0955 85.0, 114.0 -0.38
AXB13/PgnJ m 82.5 10.7   6 4.39 0.13 73.0, 97.0 -0.91
AXB15/PgnJ m 85.8 3.6   6 1.47 0.042 82.0, 90.0 -0.82
AXB19a/PgnJ m 80.2 8.5   5 3.8 0.106 72.0, 92.0 -0.98
AXB19b/PgnJ m 70.0 10.6   8 3.75 0.151 55.0, 87.0 -1.26
AXB19/PgnJ m 67.8 8.28   6 3.38 0.122 54.0, 75.0 -1.32
AXB1/PgnJ m 101.0 15.9   6 6.5 0.158 78.0, 113.0 -0.41
AXB23/PgnJ m 75.0 7.75   6 3.16 0.103 62.0, 83.0 -1.12
AXB24/PgnJ m 84.4 20.7   5 9.28 0.246 61.0, 110.0 -0.86
AXB2/PgnJ m 112.0 11.8   6 4.84 0.105 92.0, 124.0 -0.11
AXB4/PgnJ m 83.3 11.3   6 4.61 0.135 69.0, 99.0 -0.89
AXB5/PgnJ m 87.8 2.22   4 1.11 0.0253 86.0, 91.0 -0.77
AXB6/PgnJ m 89.9 7.1   8 2.51 0.079 83.0, 101.0 -0.71
AXB8/PgnJ m 109.0 6.11   5 2.73 0.0562 103.0, 118.0 -0.19
B6cC3-1/KccJ m 111.0 4.45   6 1.82 0.0401 103.0, 115.0 -0.14
BALB/cJ m 116.0 11.9   10 3.77 0.103 98.0, 134.0 0.0
BTBR T+ Itpr3tf/J m 149.0 11.1   10 3.52 0.0747 137.0, 169.0 0.9
BUB/BnJ m 131.0 13.3   9 4.42 0.101 101.0, 145.0 0.41
BXA11/PgnJ m 112.0 12.0   6 4.88 0.107 93.0, 130.0 -0.11
BXA12/PgnJ m 85.5 8.96   4 4.48 0.105 76.0, 95.0 -0.83
BXA13/PgnJ m 107.0 12.1   6 4.94 0.113 89.0, 126.0 -0.24
BXA14/PgnJ m 120.0 20.1   6 8.19 0.167 89.0, 144.0 0.11
BXA16/PgnJ m 111.0 6.89   7 2.6 0.0622 98.0, 119.0 -0.14
BXA1/PgnJ m 88.5 14.8   2   10.5 0.168 78.0, 99.0 -0.75
BXA24/PgnJ m 126.0 8.48   6 3.46 0.0675 116.0, 141.0 0.28
BXA25/PgnJ m 87.8 4.49   6 1.83 0.0511 83.0, 93.0 -0.77
BXA26/PgnJ m 65.8 5.74   6 2.34 0.0872 59.0, 73.0 -1.37
BXA2/PgnJ m 91.2 13.2   6 5.37 0.144 66.0, 105.0 -0.68
BXA4/PgnJ m 117.0 10.1   5 4.5 0.0857 107.0, 129.0 0.03
BXA7/PgnJ m 102.0 8.8   6 3.59 0.0864 93.0, 114.0 -0.38
BXA8/PgnJ m 96.8 3.87   6 1.58 0.04 91.0, 101.0 -0.52
BXD11/TyJ m 107.0 11.2   5 5.02 0.105 90.0, 120.0 -0.24
BXD12/TyJ m 107.0 19.2   6 7.85 0.179 86.0, 134.0 -0.24
BXD13/TyJ m 79.5 7.4   6 3.02 0.093 67.0, 88.0 -1.0
BXD14/TyJ m 127.0 10.5   6 4.27 0.0822 115.0, 140.0 0.3
BXD15/TyJ m 71.5 7.85   4 3.93 0.11 65.0, 82.0 -1.22
BXD16/TyJ m 122.0 3.3   4 1.65 0.027 120.0, 127.0 0.17
BXD18/TyJ m 69.5 2.12   2   1.5 0.0305 68.0, 71.0 -1.27
BXD19/TyJ m 108.0 6.0   8 2.12 0.0558 100.0, 117.0 -0.22
BXD1/TyJ m 104.0 9.91   4 4.96 0.0955 94.0, 117.0 -0.33
BXD20/TyJ m 98.0 17.5   6 7.13 0.178 72.0, 123.0 -0.49
BXD21/TyJ m 88.8 13.8   4 6.92 0.156 72.0, 104.0 -0.74
BXD22/TyJ m 118.0 0.0   1   0.0 0.0 118.0, 118.0 0.06
BXD24/TyJ-Cep290rd16/J m 97.8 11.4   6 4.65 0.116 81.0, 108.0 -0.5
BXD27/TyJ m 124.0 12.2   4 6.12 0.0988 106.0, 133.0 0.22
BXD28/TyJ m 111.0 26.2   5 11.7 0.236 80.0, 152.0 -0.14
BXD29-Tlr4lps-2J/J m 82.0 10.7   6 4.37 0.131 72.0, 101.0 -0.93
BXD2/TyJ m 124.0 6.14   4 3.07 0.0493 117.0, 130.0 0.22
BXD31/TyJ m 117.0 7.09   4 3.54 0.0607 112.0, 127.0 0.03
BXD32/TyJ m 116.0 14.3   4 7.14 0.124 95.0, 127.0 0.0
BXD33/TyJ m 89.8 14.5   6 5.92 0.162 75.0, 115.0 -0.71
BXD34/TyJ m 103.0 9.72   6 3.97 0.0946 91.0, 113.0 -0.35
BXD36/TyJ m 117.0 22.4   4 11.2 0.192 95.0, 141.0 0.03
BXD38/TyJ m 85.0 4.55   4 2.27 0.0535 80.0, 91.0 -0.85
BXD39/TyJ m 106.0 5.07   5 2.27 0.0479 99.0, 111.0 -0.27
BXD40/TyJ m 85.8 5.91   6 2.41 0.0689 75.0, 93.0 -0.82
BXD42/TyJ m 133.0 14.8   6 6.04 0.111 118.0, 152.0 0.47
BXD5/TyJ m 137.0 6.5   6 2.65 0.0473 129.0, 148.0 0.58
BXD6/TyJ m 85.2 4.17   6 1.7 0.0489 81.0, 93.0 -0.84
BXD8/TyJ m 84.8 13.0   6 5.29 0.153 67.0, 105.0 -0.85
BXD9/TyJ m 116.0 13.7   6 5.58 0.118 101.0, 135.0 0.0
BXH10/TyJ m 107.0 17.4   6 7.12 0.163 75.0, 122.0 -0.24
BXH14/TyJ m 197.0 17.2   9 5.73 0.0873 173.0, 228.0 2.22
BXH19/TyJ m 112.0 13.3   17 3.23 0.119 91.0, 136.0 -0.11
BXH20/KccJ m 130.0 15.1   8 5.33 0.116 111.0, 152.0 0.38
BXH22/KccJ m 106.0 9.12   10 2.88 0.0861 89.0, 119.0 -0.27
BXH2/TyJ m 100.0 10.4   9 3.46 0.104 86.0, 113.0 -0.44
BXH4/TyJ m 135.0 39.9   11 12.0 0.296 91.0, 201.0 0.52
BXH6/TyJ m 168.0 35.3   10 11.2 0.21 129.0, 231.0 1.42
BXH7/TyJ m 98.5 21.8   10 6.89 0.221 45.0, 117.0 -0.48
BXH8/TyJ m 120.0 14.5   11 4.37 0.121 94.0, 137.0 0.11
BXH9/TyJ m 206.0 52.3   8 18.5 0.253 103.0, 270.0 2.46
C3H/HeJ m 169.0 19.0   10 6.0 0.112 138.0, 196.0 1.45
C57BL/6J m 97.5 15.5   11 4.67 0.159 72.0, 119.0 -0.5
C57L/J m 113.0 25.2   10 7.97 0.223 58.0, 154.0 -0.08
C58/J m 113.0 11.1   10 3.5 0.0979 98.0, 126.0 -0.08
CBA/J m 119.0 15.6   10 4.93 0.131 88.0, 138.0 0.08
CE/J m 147.0 15.9   9 5.32 0.108 125.0, 178.0 0.85
DBA/2J m 135.0 13.2   10 4.19 0.0982 119.0, 160.0 0.52
FVB/NJ m 202.0 31.6   5 14.1 0.157 157.0, 232.0 2.35
I/LnJ m 116.0 24.7   9 8.23 0.214 67.0, 159.0 0.0
KK/HlJ m 202.0 32.2   8 11.4 0.16 160.0, 257.0 2.35
LG/J m 231.0 21.9   7 8.29 0.0949 195.0, 252.0 3.15
LP/J m 146.0 13.1   10 4.14 0.0894 117.0, 163.0 0.82
MA/MyJ m 157.0 22.4   6 9.15 0.142 126.0, 181.0 1.12
NOD/ShiLtJ m 153.0 40.4   10 12.8 0.264 102.0, 228.0 1.01
NON/ShiLtJ m 158.0 18.5   11 5.56 0.117 128.0, 191.0 1.15
NZB/BlNJ m 268.0 18.1   7 6.84 0.0677 246.0, 295.0 4.16
NZW/LacJ m 203.0 17.7   10 5.61 0.0874 172.0, 234.0 2.38
PL/J m 144.0 35.2   8 12.5 0.245 118.0, 203.0 0.77
RIIIS/J m 81.8 8.12   10 2.57 0.0993 70.0, 93.0 -0.93
SEA/GnJ m 112.0 26.9   11 8.11 0.241 71.0, 155.0 -0.11
SJL/J m 81.5 7.78   2   5.5 0.0954 76.0, 87.0 -0.94
SM/J m 135.0 23.4   10 7.39 0.173 98.0, 167.0 0.52
SWR/J m 113.0 22.7   9 7.57 0.2 85.0, 155.0 -0.08


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129X1/SvJ m 158.7 5.7287 169.9513 147.4487
A/J m 98.625 6.4049 111.2044 86.0456
AKR/J m 114.3 5.7287 125.5513 103.0487
AXB10/PgnJ m 67.2 8.1016 83.1118 51.2882
AXB12/PgnJ m 101.5 7.3957 116.0254 86.9746
AXB13/PgnJ m 82.5 7.3957 97.0254 67.9746
AXB15/PgnJ m 85.8333 7.3957 100.3587 71.3079
AXB19a/PgnJ m 80.2 8.1016 96.1118 64.2882
AXB19b/PgnJ m 70.0 6.4049 82.5794 57.4206
AXB19/PgnJ m 67.8333 7.3957 82.3587 53.3079
AXB1/PgnJ m 100.8333 7.3957 115.3587 86.3079
AXB23/PgnJ m 75.0 7.3957 89.5254 60.4746
AXB24/PgnJ m 84.4 8.1016 100.3118 68.4882
AXB2/PgnJ m 112.3333 7.3957 126.8587 97.8079
AXB4/PgnJ m 83.3333 7.3957 97.8587 68.8079
AXB5/PgnJ m 87.75 9.0579 105.5399 69.9601
AXB6/PgnJ m 89.875 6.4049 102.4544 77.2956
AXB8/PgnJ m 108.6 8.1016 124.5118 92.6882
B6cC3-1/KccJ m 110.8333 7.3957 125.3587 96.3079
BALB/cJ m 115.6 5.7287 126.8513 104.3487
BTBR T+ Itpr3tf/J m 148.9 5.7287 160.1513 137.6487
BUB/BnJ m 130.7778 6.0386 142.6377 118.9178
BXA11/PgnJ m 112.1667 7.3957 126.6921 97.6413
BXA12/PgnJ m 85.5 9.0579 103.2899 67.7101
BXA13/PgnJ m 107.1667 7.3957 121.6921 92.6413
BXA14/PgnJ m 120.0 7.3957 134.5254 105.4746
BXA16/PgnJ m 110.8571 6.8471 124.3051 97.4092
BXA1/PgnJ m 88.5 12.8098 113.6587 63.3413
BXA24/PgnJ m 125.6667 7.3957 140.1921 111.1413
BXA25/PgnJ m 87.8333 7.3957 102.3587 73.3079
BXA26/PgnJ m 65.8333 7.3957 80.3587 51.3079
BXA2/PgnJ m 91.1667 7.3957 105.6921 76.6413
BXA4/PgnJ m 117.4 8.1016 133.3118 101.4882
BXA7/PgnJ m 101.8333 7.3957 116.3587 87.3079
BXA8/PgnJ m 96.8333 7.3957 111.3587 82.3079
BXD11/TyJ m 107.0 8.1016 122.9118 91.0882
BXD12/TyJ m 107.3333 7.3957 121.8587 92.8079
BXD13/TyJ m 79.5 7.3957 94.0254 64.9746
BXD14/TyJ m 127.1667 7.3957 141.6921 112.6413
BXD15/TyJ m 71.5 9.0579 89.2899 53.7101
BXD16/TyJ m 122.25 9.0579 140.0399 104.4601
BXD18/TyJ m 69.5 12.8098 94.6587 44.3413
BXD19/TyJ m 107.5 6.4049 120.0794 94.9206
BXD1/TyJ m 103.75 9.0579 121.5399 85.9601
BXD20/TyJ m 98.0 7.3957 112.5254 83.4746
BXD21/TyJ m 88.75 9.0579 106.5399 70.9601
BXD24/TyJ-Cep290rd16/J m 97.8333 7.3957 112.3587 83.3079
BXD27/TyJ m 124.0 9.0579 141.7899 106.2101
BXD28/TyJ m 110.8 8.1016 126.7118 94.8882
BXD29-Tlr4lps-2J/J m 82.0 7.3957 96.5254 67.4746
BXD2/TyJ m 124.5 9.0579 142.2899 106.7101
BXD31/TyJ m 116.75 9.0579 134.5399 98.9601
BXD32/TyJ m 115.5 9.0579 133.2899 97.7101
BXD33/TyJ m 89.8333 7.3957 104.3587 75.3079
BXD34/TyJ m 102.8333 7.3957 117.3587 88.3079
BXD36/TyJ m 117.0 9.0579 134.7899 99.2101
BXD38/TyJ m 85.0 9.0579 102.7899 67.2101
BXD39/TyJ m 105.8 8.1016 121.7118 89.8882
BXD40/TyJ m 85.8333 7.3957 100.3587 71.3079
BXD42/TyJ m 133.1667 7.3957 147.6921 118.6413
BXD5/TyJ m 137.3333 7.3957 151.8587 122.8079
BXD6/TyJ m 85.1667 7.3957 99.6921 70.6413
BXD8/TyJ m 84.8333 7.3957 99.3587 70.3079
BXD9/TyJ m 115.8333 7.3957 130.3587 101.3079
BXH10/TyJ m 107.3333 7.3957 121.8587 92.8079
BXH14/TyJ m 197.0 6.0386 208.8599 185.1401
BXH19/TyJ m 111.8235 4.3937 120.4529 103.1942
BXH20/KccJ m 129.625 6.4049 142.2044 117.0456
BXH22/KccJ m 105.9 5.7287 117.1513 94.6487
BXH2/TyJ m 100.3333 6.0386 112.1933 88.4734
BXH4/TyJ m 134.8182 5.4621 145.5459 124.0905
BXH6/TyJ m 168.1 5.7287 179.3513 156.8487
BXH7/TyJ m 98.5 5.7287 109.7513 87.2487
BXH8/TyJ m 120.0 5.4621 130.7277 109.2723
BXH9/TyJ m 206.125 6.4049 218.7044 193.5456
C3H/HeJ m 169.1 5.7287 180.3513 157.8487
C57BL/6J m 97.4545 5.4621 108.1823 86.7268
C57L/J m 112.7 5.7287 123.9513 101.4487
C58/J m 113.0 5.7287 124.2513 101.7487
CBA/J m 119.4 5.7287 130.6513 108.1487
CE/J m 147.0 6.0386 158.8599 135.1401
DBA/2J m 134.9 5.7287 146.1513 123.6487
FVB/NJ m 201.6 8.1016 217.5118 185.6882
I/LnJ m 115.5556 6.0386 127.4155 103.6956
KK/HlJ m 202.0 6.4049 214.5794 189.4206
LG/J m 231.2857 6.8471 244.7336 217.8378
LP/J m 146.4 5.7287 157.6513 135.1487
MA/MyJ m 157.3333 7.3957 171.8587 142.8079
NOD/ShiLtJ m 153.1 5.7287 164.3513 141.8487
NON/ShiLtJ m 158.0909 5.4621 168.8186 147.3632
NZB/BlNJ m 267.5714 6.8471 281.0193 254.1235
NZW/LacJ m 202.8 5.7287 214.0513 191.5487
PL/J m 143.75 6.4049 156.3294 131.1706
RIIIS/J m 81.8 5.7287 93.0513 70.5487
SEA/GnJ m 111.8182 5.4621 122.5459 101.0905
SJL/J m 81.5 12.8098 106.6587 56.3413
SM/J m 135.1 5.7287 146.3513 123.8487
SWR/J m 113.2222 6.0386 125.0822 101.3623




  GWAS USING LINEAR MIXED MODELS