Phenotype measure:   Collins1   BASO

ID, description, units MPD:45111   BASO   basophil count (BASO; per volume x 103)   [n/µL]
Data set, strains Collins1   CC pre w/par   138 strains     sex: m     age: 10-14wks
Procedure complete blood count
Ontology mappings

  STRAIN COMPARISON PLOT
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Collins1 - basophil count (BASO; per volume x 103)



  MEASURE SUMMARY
Measure Summary Male
Number of strains tested138 strains
Mean of the strain means0.0296   n/µL
Median of the strain means0.0100   n/µL
SD of the strain means± 0.0456
Coefficient of variation (CV)1.54
Min–max range of strain means0   –   0.230   n/µL
Mean sample size per strain1.3   mice


  STRAIN MEANS (UNADJUSTED)
Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ m 0.008 0.00837   5 0.00374 1.05 -0.47
A/J m 0.0183 0.016   6 0.00654 0.874 0.01, 0.05 -0.25
C57BL/6J m 0.05 0.0228   6 0.00931 0.456 0.02, 0.07 0.45
CAST/EiJ m 0.075 0.0883   6 0.036 1.18 0.01, 0.22 1.0
NOD/ShiLtJ m 0.0509 0.043   11 0.013 0.845 0.47
NZO/HlLtJ m 0.01 0.0115   7 0.00436 1.15 -0.43
PreCC1009/Unc m 0.01 0.0   1   0.0 0.0 0.01, 0.01 -0.43
PreCC1057/Unc m 0.02 0.0   1   0.0 0.0 0.02, 0.02 -0.21
PreCC1114/Unc m 0.0 0.0   1   0.0 0.0 -0.65
PreCC113/Unc m 0.01 0.0   1   0.0 0.0 0.01, 0.01 -0.43
PreCC1234/Unc m 0.01 0.0   1   0.0 0.0 0.01, 0.01 -0.43
PreCC1237/Unc m 0.18 0.0   1   0.0 0.0 0.18, 0.18 3.3
PreCC1246/Unc m 0.03 0.0   1   0.0 0.0 0.03, 0.03 0.01
PreCC125/Unc m 0.0 0.0   1   0.0 0.0 -0.65
PreCC1401/Unc m 0.01 0.0   1   0.0 0.0 0.01, 0.01 -0.43
PreCC1427/Unc m 0.01 0.0   1   0.0 0.0 0.01, 0.01 -0.43
PreCC1524/Unc m 0.0 0.0   1   0.0 0.0 -0.65
PreCC1566/Unc m 0.01 0.0   1   0.0 0.0 0.01, 0.01 -0.43
PreCC1635/Unc m 0.0 0.0   1   0.0 0.0 -0.65
PreCC1639/Unc m 0.23 0.0   1   0.0 0.0 0.23, 0.23 4.4
PreCC166/Unc m 0.02 0.0   1   0.0 0.0 0.02, 0.02 -0.21
PreCC2041/Unc m 0.01 0.0   1   0.0 0.0 0.01, 0.01 -0.43
PreCC2075/Unc m 0.08 0.0   1   0.0 0.0 0.08, 0.08 1.1
PreCC219/Unc m 0.1 0.0   1   0.0 0.0 0.1, 0.1 1.54
PreCC220/Unc m 0.0 0.0   1   0.0 0.0 -0.65
PreCC2291/Unc m 0.01 0.0   1   0.0 0.0 0.01, 0.01 -0.43
PreCC232/Unc m 0.03 0.0   1   0.0 0.0 0.03, 0.03 0.01
PreCC237/Unc m 0.0 0.0   1   0.0 0.0 -0.65
PreCC2558/Unc m 0.01 0.0   1   0.0 0.0 0.01, 0.01 -0.43
PreCC291/Unc m 0.02 0.0   1   0.0 0.0 0.02, 0.02 -0.21
PreCC3009/Unc m 0.02 0.0   1   0.0 0.0 0.02, 0.02 -0.21
PreCC3011/Unc m 0.01 0.0   1   0.0 0.0 0.01, 0.01 -0.43
PreCC3018/Unc m 0.01 0.0   1   0.0 0.0 0.01, 0.01 -0.43
PreCC3019/Unc m 0.15 0.0   1   0.0 0.0 0.15, 0.15 2.64
PreCC3046/Unc m 0.01 0.0   1   0.0 0.0 0.01, 0.01 -0.43
PreCC3061/Unc m 0.02 0.0   1   0.0 0.0 0.02, 0.02 -0.21
PreCC3066/Unc m 0.0 0.0   1   0.0 0.0 -0.65
PreCC3067/Unc m 0.0 0.0   1   0.0 0.0 -0.65
PreCC3076/Unc m 0.01 0.0   1   0.0 0.0 0.01, 0.01 -0.43
PreCC3078/Unc m 0.0 0.0   1   0.0 0.0 -0.65
PreCC3080/Unc m 0.0 0.0   1   0.0 0.0 -0.65
PreCC3081/Unc m 0.0 0.0   1   0.0 0.0 -0.65
PreCC3087/Unc m 0.02 0.0   1   0.0 0.0 0.02, 0.02 -0.21
PreCC3091/Unc m 0.02 0.0   1   0.0 0.0 0.02, 0.02 -0.21
PreCC3118/Unc m 0.04 0.0   1   0.0 0.0 0.04, 0.04 0.23
PreCC3140/Unc m 0.01 0.0   1   0.0 0.0 0.01, 0.01 -0.43
PreCC3154/Unc m 0.0 0.0   1   0.0 0.0 -0.65
PreCC3156/Unc m 0.0 0.0   1   0.0 0.0 -0.65
PreCC3168/Unc m 0.0 0.0   1   0.0 0.0 -0.65
PreCC3180/Unc m 0.0 0.0   1   0.0 0.0 -0.65
PreCC3181/Unc m 0.02 0.0   1   0.0 0.0 0.02, 0.02 -0.21
PreCC3232/Unc m 0.0 0.0   1   0.0 0.0 -0.65
PreCC3289/Unc m 0.01 0.0   1   0.0 0.0 0.01, 0.01 -0.43
PreCC3291/Unc m 0.07 0.0   1   0.0 0.0 0.07, 0.07 0.89
PreCC3327/Unc m 0.01 0.0   1   0.0 0.0 0.01, 0.01 -0.43
PreCC3344/Unc m 0.03 0.0   1   0.0 0.0 0.03, 0.03 0.01
PreCC3358/Unc m 0.0 0.0   1   0.0 0.0 -0.65
PreCC3370/Unc m 0.01 0.0   1   0.0 0.0 0.01, 0.01 -0.43
PreCC3389/Unc m 0.16 0.0   1   0.0 0.0 0.16, 0.16 2.86
PreCC3401/Unc m 0.0 0.0   1   0.0 0.0 -0.65
PreCC3415/Unc m 0.01 0.0   1   0.0 0.0 0.01, 0.01 -0.43
PreCC3426/Unc m 0.01 0.0   1   0.0 0.0 0.01, 0.01 -0.43
PreCC3431/Unc m 0.12 0.0   1   0.0 0.0 0.12, 0.12 1.98
PreCC3443/Unc m 0.0 0.0   1   0.0 0.0 -0.65
PreCC3467/Unc m 0.01 0.0   1   0.0 0.0 0.01, 0.01 -0.43
PreCC3489/Unc m 0.01 0.0   1   0.0 0.0 0.01, 0.01 -0.43
PreCC3513/Unc m 0.11 0.0   1   0.0 0.0 0.11, 0.11 1.76
PreCC3515/Unc m 0.12 0.0   1   0.0 0.0 0.12, 0.12 1.98
PreCC3528/Unc m 0.01 0.0   1   0.0 0.0 0.01, 0.01 -0.43
PreCC3546/Unc m 0.0 0.0   1   0.0 0.0 -0.65
PreCC3548/Unc m 0.02 0.0   1   0.0 0.0 0.02, 0.02 -0.21
PreCC3549/Unc m 0.01 0.0   1   0.0 0.0 0.01, 0.01 -0.43
PreCC3564/Unc m 0.01 0.0   1   0.0 0.0 0.01, 0.01 -0.43
PreCC3584/Unc m 0.0 0.0   1   0.0 0.0 -0.65
PreCC3594/Unc m 0.02 0.0   1   0.0 0.0 0.02, 0.02 -0.21
PreCC3612/Unc m 0.02 0.0   1   0.0 0.0 0.02, 0.02 -0.21
PreCC381/Unc m 0.02 0.0   1   0.0 0.0 0.02, 0.02 -0.21
PreCC4179/Unc m 0.0 0.0   1   0.0 0.0 -0.65
PreCC41/Unc m 0.07 0.0   1   0.0 0.0 0.07, 0.07 0.89
PreCC4227/Unc m 0.01 0.0   1   0.0 0.0 0.01, 0.01 -0.43
PreCC4251/Unc m 0.05 0.0   1   0.0 0.0 0.05, 0.05 0.45
PreCC4390/Unc m 0.04 0.0   1   0.0 0.0 0.04, 0.04 0.23
PreCC4410/Unc m 0.03 0.0   1   0.0 0.0 0.03, 0.03 0.01
PreCC4559/Unc m 0.01 0.0   1   0.0 0.0 0.01, 0.01 -0.43
PreCC4650/Unc m 0.12 0.0   1   0.0 0.0 0.12, 0.12 1.98
PreCC477/Unc m 0.01 0.0   1   0.0 0.0 0.01, 0.01 -0.43
PreCC489/Unc m 0.01 0.0   1   0.0 0.0 0.01, 0.01 -0.43
PreCC5019/Unc m 0.02 0.0   1   0.0 0.0 0.02, 0.02 -0.21
PreCC5046/Unc m 0.0 0.0   1   0.0 0.0 -0.65
PreCC5049/Unc m 0.02 0.0   1   0.0 0.0 0.02, 0.02 -0.21
PreCC5066/Unc m 0.01 0.0   1   0.0 0.0 0.01, 0.01 -0.43
PreCC5067/Unc m 0.0 0.0   1   0.0 0.0 -0.65
PreCC5076/Unc m 0.01 0.0   1   0.0 0.0 0.01, 0.01 -0.43
PreCC5087/Unc m 0.01 0.0   1   0.0 0.0 0.01, 0.01 -0.43
PreCC5091/Unc m 0.17 0.0   1   0.0 0.0 0.17, 0.17 3.08
PreCC5118/Unc m 0.02 0.0   1   0.0 0.0 0.02, 0.02 -0.21
PreCC5130/Unc m 0.01 0.0   1   0.0 0.0 0.01, 0.01 -0.43
PreCC5140/Unc m 0.01 0.0   1   0.0 0.0 0.01, 0.01 -0.43
PreCC5154/Unc m 0.01 0.0   1   0.0 0.0 0.01, 0.01 -0.43
PreCC5156/Unc m 0.01 0.0   1   0.0 0.0 0.01, 0.01 -0.43
PreCC5164/Unc m 0.0 0.0   1   0.0 0.0 -0.65
PreCC5232/Unc m 0.01 0.0   1   0.0 0.0 0.01, 0.01 -0.43
PreCC5252/Unc m 0.0 0.0   1   0.0 0.0 -0.65
PreCC5291/Unc m 0.02 0.0   1   0.0 0.0 0.02, 0.02 -0.21
PreCC5308/Unc m 0.01 0.0   1   0.0 0.0 0.01, 0.01 -0.43
PreCC5344/Unc m 0.01 0.0   1   0.0 0.0 0.01, 0.01 -0.43
PreCC5370/Unc m 0.0 0.0   1   0.0 0.0 -0.65
PreCC5389/Unc m 0.01 0.0   1   0.0 0.0 0.01, 0.01 -0.43
PreCC538/Unc m 0.0 0.0   1   0.0 0.0 -0.65
PreCC5401/Unc m 0.02 0.0   1   0.0 0.0 0.02, 0.02 -0.21
PreCC5410/Unc m 0.01 0.0   1   0.0 0.0 0.01, 0.01 -0.43
PreCC5454/Unc m 0.0 0.0   1   0.0 0.0 -0.65
PreCC5480/Unc m 0.02 0.0   1   0.0 0.0 0.02, 0.02 -0.21
PreCC5489/Unc m 0.0 0.0   1   0.0 0.0 -0.65
PreCC5513/Unc m 0.01 0.0   1   0.0 0.0 0.01, 0.01 -0.43
PreCC5515/Unc m 0.02 0.0   1   0.0 0.0 0.02, 0.02 -0.21
PreCC5516/Unc m 0.01 0.0   1   0.0 0.0 0.01, 0.01 -0.43
PreCC5528/Unc m 0.0 0.0   1   0.0 0.0 -0.65
PreCC5546/Unc m 0.02 0.0   1   0.0 0.0 0.02, 0.02 -0.21
PreCC5549/Unc m 0.0 0.0   1   0.0 0.0 -0.65
PreCC555/Unc m 0.0 0.0   1   0.0 0.0 -0.65
PreCC5560/Unc m 0.0 0.0   1   0.0 0.0 -0.65
PreCC559/Unc m 0.01 0.0   1   0.0 0.0 0.01, 0.01 -0.43
PreCC5612/Unc m 0.01 0.0   1   0.0 0.0 0.01, 0.01 -0.43
PreCC692/Unc m 0.1 0.0   1   0.0 0.0 0.1, 0.1 1.54
PreCC712/Unc m 0.01 0.0   1   0.0 0.0 0.01, 0.01 -0.43
PreCC739/Unc m 0.13 0.0   1   0.0 0.0 0.13, 0.13 2.2
PreCC779/Unc m 0.03 0.0   1   0.0 0.0 0.03, 0.03 0.01
PreCC799/Unc m 0.08 0.0   1   0.0 0.0 0.08, 0.08 1.1
PreCC801/Unc m 0.0 0.0   1   0.0 0.0 -0.65
PreCC820/Unc m 0.07 0.0   1   0.0 0.0 0.07, 0.07 0.89
PreCC821/Unc m 0.04 0.0   1   0.0 0.0 0.04, 0.04 0.23
PreCC867/Unc m 0.16 0.0   1   0.0 0.0 0.16, 0.16 2.86
PreCC896/Unc m 0.15 0.0   1   0.0 0.0 0.15, 0.15 2.64
PreCC900/Unc m 0.02 0.0   1   0.0 0.0 0.02, 0.02 -0.21
PreCC940/Unc m 0.17 0.0   1   0.0 0.0 0.17, 0.17 3.08
PWK/PhJ m 0.08 0.03   5 0.0134 0.375 0.05, 0.11 1.1
WSB/EiJ m 0.0675 0.0636   8 0.0225 0.943 0.02, 0.21 0.83




  GENOME-WIDE ASSOCIATION (GWAS) STATIC PLOT
Plot generated with EMMA / pyLMM using 132K SNP array. Click on plot to view at larger size.