Phenotype measure

ID, description, units MPD:42803   pct_fat   percent of body mass that is fat, head excluded   [%]
Data set, strains Donahue16   B6.A consomic w/par   23 strains     sex: both     age: 24-29wks
Procedure DXA
Ontology mappings


  STRAIN COMPARISON PLOT
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Donahue16 - percent of body mass that is fat, head excluded



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested22 strains23 strains
Mean of the strain means22.3   % 21.8   %
Median of the strain means21.6   % 21.3   %
SD of the strain means± 3.95 ± 3.87
Coefficient of variation (CV)0.177 0.178
Min–max range of strain means16.6   –   34.0   % 15.5   –   31.1   %
Mean sample size per strain9.7   mice 9.5   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 23.4242 23.4242 0.8693 0.3517
strain 21 4035.5387 192.1685 7.1319 < 0.0001
sex:strain 21 1905.0663 90.7174 3.3668 < 0.0001
Residuals 384 10346.9101 26.9451


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
Strain Sex Mean SD N mice SEM CV Min, Max Z score
A/J f 26.8 3.47   8 1.23 0.13 23.4, 34.9 1.13
A/J m 18.7 1.8   5 0.807 0.0967 16.3, 20.9 -0.8
B6.A-Chr1 f 28.0 5.93   9 1.98 0.212 16.5, 35.2 1.44
B6.A-Chr1 m 30.8 5.81   10 1.84 0.189 19.4, 38.4 2.32
B6.A-Chr10 f 17.8 3.9   10 1.23 0.219 12.1, 24.8 -1.14
B6.A-Chr10 m 20.7 8.85   12 2.55 0.428 11.2, 37.0 -0.29
B6.A-Chr11 f 18.4 2.76   6 1.13 0.149 14.4, 22.8 -0.99
B6.A-Chr11 m 20.9 7.89   12 2.28 0.377 12.0, 30.6 -0.23
B6.A-Chr12 f 21.3 4.77   11 1.44 0.224 12.3, 28.2 -0.26
B6.A-Chr12 m 15.6 5.15   9 1.72 0.329 11.6, 28.9 -1.6
B6.A-Chr13 f 34.0 8.03   9 2.68 0.236 22.7, 43.0 2.96
B6.A-Chr13 m 20.5 7.2   10 2.28 0.351 13.9, 35.8 -0.34
B6.A-Chr14 f 22.0 5.57   10 1.76 0.254 13.0, 29.4 -0.08
B6.A-Chr14 m 21.8 6.19   9 2.06 0.284 15.5, 33.5 0.0
B6.A-Chr15 f 22.9 4.01   10 1.27 0.175 18.1, 28.9 0.15
B6.A-Chr15 m 19.7 6.02   10 1.9 0.306 13.8, 33.9 -0.54
B6.A-Chr16 f 20.7 3.13   7 1.18 0.151 16.6, 25.6 -0.41
B6.A-Chr16 m 22.2 4.51   5 2.02 0.204 17.5, 29.3 0.1
B6.A-Chr17 f 20.2 4.78   14 1.28 0.236 12.8, 27.2 -0.54
B6.A-Chr17 m 21.9 5.13   18 1.21 0.234 12.8, 32.2 0.02
B6.A-Chr18 f 24.4 7.46   11 2.25 0.306 15.9, 38.1 0.53
B6.A-Chr18 m 25.6 3.85   8 1.36 0.151 21.2, 32.5 0.98
B6.A-Chr19 f 23.1 6.55   10 2.07 0.284 13.8, 34.7 0.2
B6.A-Chr19 m 22.9 4.65   9 1.55 0.203 17.8, 30.4 0.28
B6.A-Chr2 f 26.1 5.65   9 1.88 0.217 16.1, 35.5 0.96
B6.A-Chr2 m 25.1 7.32   8 2.59 0.291 14.6, 37.8 0.85
B6.A-Chr3 f 17.0 2.14   13 0.594 0.126 14.0, 21.6 -1.35
B6.A-Chr3 m 17.9 6.06   11 1.83 0.338 11.6, 28.4 -1.01
B6.A-Chr4 f 16.6 1.83   8 0.646 0.11 14.3, 20.1 -1.45
B6.A-Chr4 m 15.5 2.64   8 0.932 0.17 11.6, 18.7 -1.63
B6.A-Chr5 f 20.9 2.46   8 0.871 0.118 17.9, 24.0 -0.36
B6.A-Chr5 m 31.1 6.97   8 2.47 0.224 20.5, 41.0 2.4
B6.A-Chr6 f 22.3 1.42   8 0.501 0.0635 20.4, 24.4 0.0
B6.A-Chr6 m 25.5 4.66   9 1.55 0.182 19.9, 32.7 0.95
B6.A-Chr7 f 20.9 3.67   8 1.3 0.176 16.6, 28.2 -0.36
B6.A-Chr7 m 21.5 3.67   9 1.22 0.171 14.8, 25.1 -0.08
B6.A-Chr8 f 20.4 3.8   12 1.1 0.186 15.7, 30.4 -0.49
B6.A-Chr8 m 19.4 5.88   11 1.77 0.302 11.6, 30.3 -0.62
B6.A-Chr9 f 23.9 4.37   9 1.46 0.183 14.7, 29.7 0.4
B6.A-Chr9 m 22.0 2.68   10 0.847 0.122 15.1, 24.3 0.05
B6.A-ChrX f 20.3 4.51   12 1.3 0.223 14.3, 26.5 -0.51
B6.A-ChrX m 19.7 2.55   13 0.708 0.129 16.1, 23.1 -0.54
B6.A-ChrY m 21.3 7.56   9 2.52 0.355 13.7, 37.1 -0.13
C57BL/6J f 23.0 3.57   12 1.03 0.155 18.2, 29.2 0.17
C57BL/6J m 21.3 5.75   10 1.82 0.27 12.3, 29.2 -0.13


  LEAST SQUARES MEANS (ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
A/J f 26.8125 1.8352 30.4209 23.2041
A/J m 18.66 2.3214 23.2243 14.0957
B6.A-Chr1 f 28.0222 1.7303 31.4242 24.6202
B6.A-Chr1 m 30.79 1.6415 34.0174 27.5626
B6.A-Chr10 f 17.84 1.6415 21.0674 14.6126
B6.A-Chr10 m 20.675 1.4985 23.6212 17.7288
B6.A-Chr11 f 18.45 2.1192 22.6166 14.2834
B6.A-Chr11 m 20.9083 1.4985 23.8546 17.9621
B6.A-Chr12 f 21.3182 1.5651 24.3954 18.2409
B6.A-Chr12 m 15.6444 1.7303 19.0465 12.2424
B6.A-Chr13 f 34.0 1.7303 37.402 30.598
B6.A-Chr13 m 20.54 1.6415 23.7674 17.3126
B6.A-Chr14 f 21.96 1.6415 25.1874 18.7326
B6.A-Chr14 m 21.7889 1.7303 25.1909 18.3869
B6.A-Chr15 f 22.91 1.6415 26.1374 19.6826
B6.A-Chr15 m 19.71 1.6415 22.9374 16.4826
B6.A-Chr16 f 20.7286 1.962 24.5861 16.871
B6.A-Chr16 m 22.16 2.3214 26.7243 17.5957
B6.A-Chr17 f 20.2143 1.3873 22.942 17.4866
B6.A-Chr17 m 21.9111 1.2235 24.3167 19.5055
B6.A-Chr18 f 24.3909 1.5651 27.4682 21.3137
B6.A-Chr18 m 25.5625 1.8352 29.1709 21.9541
B6.A-Chr19 f 23.06 1.6415 26.2874 19.8326
B6.A-Chr19 m 22.9444 1.7303 26.3465 19.5424
B6.A-Chr2 f 26.0778 1.7303 29.4798 22.6758
B6.A-Chr2 m 25.1375 1.8352 28.7459 21.5291
B6.A-Chr3 f 17.0 1.4397 19.8307 14.1693
B6.A-Chr3 m 17.9 1.5651 20.9772 14.8228
B6.A-Chr4 f 16.65 1.8352 20.2584 13.0416
B6.A-Chr4 m 15.5125 1.8352 19.1209 11.9041
B6.A-Chr5 f 20.9125 1.8352 24.5209 17.3041
B6.A-Chr5 m 31.1 1.8352 34.7084 27.4916
B6.A-Chr6 f 22.33 1.8352 25.9384 18.7216
B6.A-Chr6 m 25.5222 1.7303 28.9242 22.1202
B6.A-Chr7 f 20.9125 1.8352 24.5209 17.3041
B6.A-Chr7 m 21.4667 1.7303 24.8687 18.0646
B6.A-Chr8 f 20.4417 1.4985 23.3879 17.4954
B6.A-Chr8 m 19.4273 1.5651 22.5045 16.35
B6.A-Chr9 f 23.8667 1.7303 27.2687 20.4646
B6.A-Chr9 m 22.02 1.6415 25.2474 18.7926
B6.A-ChrX f 20.2583 1.4985 23.2046 17.3121
B6.A-ChrX m 19.7394 1.4397 22.5701 16.9088
C57BL/6J f 22.9583 1.4985 25.9046 20.0121
C57BL/6J m 21.26 1.6415 24.4874 18.0326


  LEAST SQUARES MEANS (ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
A/J both 22.7363 1.4796 25.6454 19.8271
B6.A-Chr1 both 29.4061 1.1925 31.7508 27.0614
B6.A-Chr10 both 19.2575 1.1113 21.4425 17.0725
B6.A-Chr11 both 19.6792 1.2977 22.2307 17.1276
B6.A-Chr12 both 18.4813 1.1666 20.775 16.1877
B6.A-Chr13 both 27.27 1.1925 29.6147 24.9253
B6.A-Chr14 both 21.8744 1.1925 24.2191 19.5298
B6.A-Chr15 both 21.31 1.1607 23.5921 19.0279
B6.A-Chr16 both 21.4443 1.5197 24.4323 18.4563
B6.A-Chr17 both 21.0627 0.9249 22.8812 19.2442
B6.A-Chr18 both 24.9767 1.206 27.3479 22.6055
B6.A-Chr19 both 23.0022 1.1925 25.3469 20.6575
B6.A-Chr2 both 25.6076 1.2612 28.0873 23.128
B6.A-Chr3 both 17.45 1.0633 19.5406 15.3594
B6.A-Chr4 both 16.0812 1.2977 18.6328 13.5297
B6.A-Chr5 both 26.0063 1.2977 28.5578 23.4547
B6.A-Chr6 both 23.9261 1.2612 26.4057 21.4465
B6.A-Chr7 both 21.1896 1.2612 23.6692 18.71
B6.A-Chr8 both 19.9345 1.0834 22.0646 17.8043
B6.A-Chr9 both 22.9433 1.1925 25.288 20.5986
B6.A-ChrX both 19.9989 1.039 22.0417 17.956
C57BL/6J both 22.1092 1.1113 24.2942 19.9242