Project measure / variable:   Donahue5   pct_NK_cells

ID, description, units MPD:41407   pct_NK_cells   natural killer (NK) cells (percentage of viable WBC)   [%]  
Data set, strains Donahue5   B6.A consomic w/par   22 strains     sex: both     age: 7wks
Procedure immune cell quantification
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  STRAIN COMPARISON PLOT
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Donahue5 - natural killer (NK) cells (percentage of viable WBC)



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested22 strains22 strains
Mean of the strain means5.75   % 5.72   %
Median of the strain means5.41   % 5.42   %
SD of the strain means± 2.17 ± 1.99
Coefficient of variation (CV)0.377 0.349
Min–max range of strain means1.60   –   10.1   % 1.96   –   9.62   %
Mean sample size per strain8.4   mice 8.4   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 0.4842 0.4842 0.2025 0.653
strain 21 1616.0813 76.9563 32.1835 < 0.0001
sex:strain 21 46.6862 2.2232 0.9297 0.5525
Residuals 341 815.3899 2.3912


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
A/J f 2.34 0.633   16 0.158 0.27 1.36, 3.43 -1.57
A/J m 1.96 0.774   16 0.193 0.394 1.05, 3.43 -1.89
B6.A-Chr1 f 4.88 0.489   8 0.173 0.1 3.97, 5.64 -0.4
B6.A-Chr1 m 4.72 0.766   8 0.271 0.162 3.6, 5.92 -0.5
B6.A-Chr10 f 8.19 1.23   8 0.435 0.15 6.51, 10.2 1.12
B6.A-Chr10 m 8.2 2.01   8 0.712 0.245 7.1, 13.0 1.24
B6.A-Chr11 f 7.01 2.66   8 0.939 0.379 4.86, 12.8 0.58
B6.A-Chr11 m 6.88 2.09   8 0.739 0.304 3.86, 10.6 0.58
B6.A-Chr12 f 5.93 0.926   8 0.327 0.156 4.75, 7.5 0.08
B6.A-Chr12 m 6.68 0.781   8 0.276 0.117 5.98, 8.44 0.48
B6.A-Chr13 f 8.66 1.73   8 0.611 0.2 6.41, 11.0 1.34
B6.A-Chr13 m 8.6 1.44   8 0.511 0.168 6.66, 10.7 1.44
B6.A-Chr14 f 5.16 2.51   8 0.889 0.487 2.28, 8.03 -0.27
B6.A-Chr14 m 5.32 2.48   8 0.877 0.467 2.47, 8.71 -0.2
B6.A-Chr15 f 4.71 1.94   8 0.686 0.412 0.738, 7.52 -0.48
B6.A-Chr15 m 5.88 0.921   8 0.326 0.157 4.66, 7.37 0.08
B6.A-Chr16 f 8.31 3.63   8 1.28 0.438 4.36, 12.6 1.18
B6.A-Chr16 m 6.24 2.59   8 0.915 0.415 3.16, 10.3 0.26
B6.A-Chr17 f 2.38 0.473   8 0.167 0.199 1.65, 3.15 -1.55
B6.A-Chr17 m 3.31 0.888   8 0.314 0.268 2.56, 5.21 -1.21
B6.A-Chr18 f 5.41 1.23   8 0.435 0.227 4.25, 7.87 -0.16
B6.A-Chr18 m 5.39 1.67   8 0.592 0.311 3.35, 8.24 -0.17
B6.A-Chr19 f 6.19 1.45   8 0.512 0.234 3.63, 8.31 0.2
B6.A-Chr19 m 7.1 1.72   8 0.607 0.242 4.06, 9.23 0.69
B6.A-Chr2 f 5.41 1.38   9 0.459 0.254 3.38, 7.37 -0.16
B6.A-Chr2 m 4.87 1.21   8 0.427 0.248 3.56, 7.12 -0.43
B6.A-Chr3 f 6.56 2.83   8 0.999 0.431 3.65, 11.7 0.37
B6.A-Chr3 m 6.08 2.04   8 0.72 0.335 3.93, 8.53 0.18
B6.A-Chr4 f 4.81 0.529   8 0.187 0.11 4.06, 5.77 -0.43
B6.A-Chr4 m 4.51 0.383   8 0.135 0.0849 4.01, 5.1 -0.61
B6.A-Chr5 f 4.31 1.17   8 0.415 0.272 2.73, 6.45 -0.66
B6.A-Chr5 m 5.46 0.835   8 0.295 0.153 4.2, 6.89 -0.13
B6.A-Chr6 f 1.6 0.351   8 0.124 0.22 0.98, 1.98 -1.91
B6.A-Chr6 m 2.0 1.2   8 0.426 0.601 0.847, 4.77 -1.87
B6.A-Chr7 f 8.9 2.07   8 0.731 0.232 6.86, 13.7 1.45
B6.A-Chr7 m 8.75 1.61   8 0.571 0.185 6.99, 11.4 1.52
B6.A-Chr8 f 4.79 1.13   8 0.401 0.236 2.72, 5.99 -0.44
B6.A-Chr8 m 4.57 0.9   8 0.318 0.197 3.58, 6.23 -0.58
B6.A-Chr9 f 5.37 1.34   8 0.475 0.25 3.5, 7.26 -0.18
B6.A-Chr9 m 4.78 0.801   8 0.283 0.168 4.19, 6.57 -0.47
B6.A-ChrX f 10.1 2.25   8 0.797 0.222 6.76, 13.4 2.0
B6.A-ChrX m 9.62 1.76   8 0.624 0.183 7.06, 11.8 1.95
C57BL/6J f 5.55 0.869   16 0.217 0.157 4.3, 7.68 -0.09
C57BL/6J m 4.96 0.851   16 0.213 0.172 3.51, 6.24 -0.38


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
A/J f 2.3413 0.3866 3.1017 1.5809
A/J m 1.964 0.3866 2.7244 1.2036
B6.A-Chr1 f 4.8807 0.5467 5.956 3.8053
B6.A-Chr1 m 4.7184 0.5467 5.7937 3.643
B6.A-Chr10 f 8.1913 0.5467 9.2666 7.1159
B6.A-Chr10 m 8.2013 0.5467 9.2766 7.1259
B6.A-Chr11 f 7.0125 0.5467 8.0879 5.9371
B6.A-Chr11 m 6.8788 0.5467 7.9541 5.8034
B6.A-Chr12 f 5.9312 0.5467 7.0066 4.8559
B6.A-Chr12 m 6.675 0.5467 7.7504 5.5996
B6.A-Chr13 f 8.665 0.5467 9.7404 7.5896
B6.A-Chr13 m 8.6 0.5467 9.6754 7.5246
B6.A-Chr14 f 5.162 0.5467 6.2374 4.0866
B6.A-Chr14 m 5.3174 0.5467 6.3927 4.242
B6.A-Chr15 f 4.7076 0.5467 5.783 3.6323
B6.A-Chr15 m 5.8825 0.5467 6.9579 4.8071
B6.A-Chr16 f 8.3062 0.5467 9.3816 7.2309
B6.A-Chr16 m 6.235 0.5467 7.3104 5.1596
B6.A-Chr17 f 2.3798 0.5467 3.4551 1.3044
B6.A-Chr17 m 3.3093 0.5467 4.3846 2.2339
B6.A-Chr18 f 5.41 0.5467 6.4854 4.3346
B6.A-Chr18 m 5.3862 0.5467 6.4616 4.3109
B6.A-Chr19 f 6.1928 0.5467 7.2681 5.1174
B6.A-Chr19 m 7.1008 0.5467 8.1761 6.0254
B6.A-Chr2 f 5.4122 0.5154 6.4261 4.3984
B6.A-Chr2 m 4.8675 0.5467 5.9429 3.7921
B6.A-Chr3 f 6.5581 0.5467 7.6335 5.4828
B6.A-Chr3 m 6.0844 0.5467 7.1597 5.009
B6.A-Chr4 f 4.81 0.5467 5.8854 3.7346
B6.A-Chr4 m 4.5075 0.5467 5.5829 3.4321
B6.A-Chr5 f 4.3063 0.5467 5.3816 3.2309
B6.A-Chr5 m 5.4613 0.5467 6.5366 4.3859
B6.A-Chr6 f 1.5961 0.5467 2.6714 0.5207
B6.A-Chr6 m 2.0015 0.5467 3.0768 0.9261
B6.A-Chr7 f 8.8975 0.5467 9.9729 7.8221
B6.A-Chr7 m 8.745 0.5467 9.8204 7.6696
B6.A-Chr8 f 4.7942 0.5467 5.8696 3.7189
B6.A-Chr8 m 4.5728 0.5467 5.6481 3.4974
B6.A-Chr9 f 5.3675 0.5467 6.4429 4.2921
B6.A-Chr9 m 4.78 0.5467 5.8554 3.7046
B6.A-ChrX f 10.1413 0.5467 11.2166 9.0659
B6.A-ChrX m 9.62 0.5467 10.6954 8.5446
C57BL/6J f 5.5534 0.3866 6.3138 4.793
C57BL/6J m 4.9566 0.3866 5.717 4.1962


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
A/J both 2.1526 0.2734 2.6903 1.6149
B6.A-Chr1 both 4.7995 0.3866 5.5599 4.0391
B6.A-Chr10 both 8.1963 0.3866 8.9566 7.4359
B6.A-Chr11 both 6.9456 0.3866 7.706 6.1852
B6.A-Chr12 both 6.3031 0.3866 7.0635 5.5427
B6.A-Chr13 both 8.6325 0.3866 9.3929 7.8721
B6.A-Chr14 both 5.2397 0.3866 6.0001 4.4793
B6.A-Chr15 both 5.2951 0.3866 6.0555 4.5347
B6.A-Chr16 both 7.2706 0.3866 8.031 6.5102
B6.A-Chr17 both 2.8445 0.3866 3.6049 2.0841
B6.A-Chr18 both 5.3981 0.3866 6.1585 4.6377
B6.A-Chr19 both 6.6468 0.3866 7.4071 5.8864
B6.A-Chr2 both 5.1399 0.3757 5.8788 4.4009
B6.A-Chr3 both 6.3213 0.3866 7.0816 5.5609
B6.A-Chr4 both 4.6587 0.3866 5.4191 3.8984
B6.A-Chr5 both 4.8838 0.3866 5.6441 4.1234
B6.A-Chr6 both 1.7988 0.3866 2.5592 1.0384
B6.A-Chr7 both 8.8212 0.3866 9.5816 8.0609
B6.A-Chr8 both 4.6835 0.3866 5.4439 3.9231
B6.A-Chr9 both 5.0738 0.3866 5.8341 4.3134
B6.A-ChrX both 9.8806 0.3866 10.641 9.1202
C57BL/6J both 5.255 0.2734 5.7927 4.7174




GWAS analysis not available: Strain panel must be either Inbred, HMDP, BXD, BXH, CXB, or AXB/BXA