Phenotype measure:   Donahue4   episode_stereotypic

ID, description, units MPD:41331   episode_stereotypic   number of discrete stereotypic episodes, repetitive activity, 10 min test   [n]
Data set, strains Donahue4   B6.PWD consomic w/par   28 strains     sex: both     age: 6wks
Procedure open field test
Ontology mappings

  STRAIN COMPARISON PLOT
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Donahue4 - number of discrete stereotypic episodes, repetitive activity, 10 min test



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested28 strains28 strains
Mean of the strain means96.3   n 99.7   n
Median of the strain means97.5   n 101   n
SD of the strain means± 6.47 ± 7.09
Coefficient of variation (CV)0.0672 0.0711
Min–max range of strain means80.9   –   104   n 73.4   –   108   n
Mean sample size per strain7.8   mice 7.7   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 1107.1769 1107.1769 14.0904 0.0002
strain 27 16506.4532 611.3501 7.7803 < 0.0001
sex:strain 27 2606.7323 96.5456 1.2287 0.2027
Residuals 371 29151.8905 78.5765


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
B6.PWD-Chr1 f 91.4 12.2   8 4.3 0.133 76.0, 111.0 -0.75
B6.PWD-Chr1 m 94.2 4.83   8 1.71 0.0513 86.0, 101.0 -0.78
B6.PWD-Chr10.1 f 99.9 6.96   8 2.46 0.0697 91.0, 112.0 0.56
B6.PWD-Chr10.1 m 104.0 7.8   8 2.76 0.0751 95.0, 113.0 0.61
B6.PWD-Chr10.2 f 104.0 10.2   8 3.6 0.0974 87.0, 116.0 1.2
B6.PWD-Chr10.2 m 104.0 7.33   8 2.59 0.0708 95.0, 114.0 0.61
B6.PWD-Chr10.3 f 98.8 5.44   8 1.92 0.0551 87.0, 104.0 0.39
B6.PWD-Chr10.3 m 108.0 9.71   8 3.43 0.0901 90.0, 119.0 1.17
B6.PWD-Chr11.1 f 96.2 7.78   8 2.75 0.0808 82.0, 108.0 -0.01
B6.PWD-Chr11.1 m 104.0 6.48   8 2.29 0.0625 91.0, 112.0 0.61
B6.PWD-Chr11.2 f 90.7 13.3   7 5.01 0.146 72.0, 111.0 -0.86
B6.PWD-Chr11.2 m 101.0 9.96   7 3.77 0.0989 87.0, 112.0 0.18
B6.PWD-Chr11.3 f 101.0 10.6   8 3.76 0.105 82.0, 111.0 0.73
B6.PWD-Chr11.3 m 97.9 5.44   8 1.92 0.0555 88.0, 104.0 -0.25
B6.PWD-Chr12 f 103.0 9.12   8 3.22 0.0882 89.0, 113.0 1.04
B6.PWD-Chr12 m 106.0 5.0   8 1.77 0.0472 99.0, 116.0 0.89
B6.PWD-Chr13 f 91.6 10.1   8 3.57 0.11 79.0, 111.0 -0.72
B6.PWD-Chr13 m 94.9 12.9   8 4.55 0.136 72.0, 108.0 -0.68
B6.PWD-Chr14 f 103.0 6.4   8 2.26 0.0622 93.0, 111.0 1.04
B6.PWD-Chr14 m 107.0 7.56   8 2.67 0.0709 96.0, 120.0 1.03
B6.PWD-Chr15 f 95.8 8.61   8 3.05 0.09 85.0, 113.0 -0.07
B6.PWD-Chr15 m 97.8 10.7   8 3.78 0.109 80.0, 110.0 -0.27
B6.PWD-Chr16 f 102.0 9.72   8 3.44 0.0957 87.0, 110.0 0.89
B6.PWD-Chr16 m 99.4 8.7   8 3.08 0.0876 89.0, 114.0 -0.04
B6.PWD-Chr17 f 97.6 6.14   8 2.17 0.0629 87.0, 106.0 0.21
B6.PWD-Chr17 m 92.5 6.02   6 2.46 0.0651 86.0, 101.0 -1.02
B6.PWD-Chr18 f 97.5 6.0   8 2.12 0.0615 87.0, 104.0 0.19
B6.PWD-Chr18 m 103.0 10.8   8 3.83 0.105 85.0, 118.0 0.47
B6.PWD-Chr19 f 86.9 7.59   8 2.68 0.0873 77.0, 101.0 -1.45
B6.PWD-Chr19 m 102.0 7.74   7 2.93 0.0761 88.0, 112.0 0.32
B6.PWD-Chr2 f 82.2 12.2   8 4.33 0.149 57.0, 95.0 -2.17
B6.PWD-Chr2 m 85.9 16.5   8 5.82 0.192 56.0, 107.0 -1.95
B6.PWD-Chr3 f 97.9 6.77   8 2.39 0.0692 87.0, 108.0 0.25
B6.PWD-Chr3 m 104.0 9.45   3 5.46 0.0912 93.0, 111.0 0.61
B6.PWD-Chr5 f 98.2 6.63   8 2.34 0.0675 87.0, 110.0 0.3
B6.PWD-Chr5 m 97.5 7.17   8 2.54 0.0736 88.0, 112.0 -0.31
B6.PWD-Chr6 f 86.8 8.41   8 2.97 0.097 72.0, 99.0 -1.46
B6.PWD-Chr6 m 99.5 7.41   8 2.62 0.0744 91.0, 114.0 -0.03
B6.PWD-Chr8 f 93.6 17.3   5 7.76 0.185 66.0, 111.0 -0.41
B6.PWD-Chr8 m 96.7 10.6   6 4.33 0.11 81.0, 109.0 -0.42
B6.PWD-Chr9 f 94.9 12.5   8 4.42 0.132 77.0, 107.0 -0.21
B6.PWD-Chr9 m 102.0 2.0   8 0.707 0.0195 100.0, 105.0 0.32
B6.PWD-ChrX.1 f 104.0 8.02   6 3.27 0.0768 92.0, 114.0 1.2
B6.PWD-ChrX.1 m 105.0 11.4   8 4.03 0.108 91.0, 120.0 0.75
B6.PWD-ChrX.2 f 93.8 11.1   8 3.94 0.119 77.0, 108.0 -0.38
B6.PWD-ChrX.2 m 101.0 5.83   7 2.2 0.0577 92.0, 108.0 0.18
B6.PWD-ChrX.3 f 95.8 7.92   8 2.8 0.0828 88.0, 108.0 -0.07
B6.PWD-ChrX.3 m 99.9 5.94   8 2.1 0.0595 94.0, 109.0 0.03
B6.PWD-ChrY f 104.0 5.97   7 2.26 0.0574 96.0, 114.0 1.2
B6.PWD-ChrY m 106.0 7.39   7 2.79 0.07 95.0, 115.0 0.89
B6.PWD-mt f 99.9 8.94   8 3.16 0.0895 86.0, 116.0 0.56
B6.PWD-mt m 101.0 6.84   8 2.42 0.068 90.0, 113.0 0.18
C57BL/6J f 104.0 5.5   8 1.94 0.0527 95.0, 112.0 1.2
C57BL/6J m 104.0 4.39   8 1.55 0.0423 100.0, 113.0 0.61
PWD/PhJ f 80.9 5.61   7 2.12 0.0694 73.0, 91.0 -2.37
PWD/PhJ m 73.4 11.4   8 4.04 0.156 59.0, 88.0 -3.71


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
B6.PWD-Chr1 f 91.375 3.134 97.5377 85.2123
B6.PWD-Chr1 m 94.25 3.134 100.4127 88.0873
B6.PWD-Chr10.1 f 99.875 3.134 106.0377 93.7123
B6.PWD-Chr10.1 m 103.75 3.134 109.9127 97.5873
B6.PWD-Chr10.2 f 104.375 3.134 110.5377 98.2123
B6.PWD-Chr10.2 m 103.5 3.134 109.6627 97.3373
B6.PWD-Chr10.3 f 98.75 3.134 104.9127 92.5873
B6.PWD-Chr10.3 m 107.75 3.134 113.9127 101.5873
B6.PWD-Chr11.1 f 96.25 3.134 102.4127 90.0873
B6.PWD-Chr11.1 m 103.625 3.134 109.7877 97.4623
B6.PWD-Chr11.2 f 90.7143 3.3504 97.3025 84.1261
B6.PWD-Chr11.2 m 100.7143 3.3504 107.3025 94.1261
B6.PWD-Chr11.3 f 101.125 3.134 107.2877 94.9623
B6.PWD-Chr11.3 m 97.875 3.134 104.0377 91.7123
B6.PWD-Chr12 f 103.375 3.134 109.5377 97.2123
B6.PWD-Chr12 m 105.875 3.134 112.0377 99.7123
B6.PWD-Chr13 f 91.625 3.134 97.7877 85.4623
B6.PWD-Chr13 m 94.875 3.134 101.0377 88.7123
B6.PWD-Chr14 f 102.875 3.134 109.0377 96.7123
B6.PWD-Chr14 m 106.625 3.134 112.7877 100.4623
B6.PWD-Chr15 f 95.75 3.134 101.9127 89.5873
B6.PWD-Chr15 m 97.75 3.134 103.9127 91.5873
B6.PWD-Chr16 f 101.625 3.134 107.7877 95.4623
B6.PWD-Chr16 m 99.375 3.134 105.5377 93.2123
B6.PWD-Chr17 f 97.625 3.134 103.7877 91.4623
B6.PWD-Chr17 m 92.5 3.6189 99.616 85.384
B6.PWD-Chr18 f 97.5 3.134 103.6627 91.3373
B6.PWD-Chr18 m 103.0 3.134 109.1627 96.8373
B6.PWD-Chr19 f 86.875 3.134 93.0377 80.7123
B6.PWD-Chr19 m 101.7143 3.3504 108.3025 95.1261
B6.PWD-Chr2 f 82.25 3.134 88.4127 76.0873
B6.PWD-Chr2 m 85.875 3.134 92.0377 79.7123
B6.PWD-Chr3 f 97.875 3.134 104.0377 91.7123
B6.PWD-Chr3 m 103.6667 5.1178 113.7303 93.6031
B6.PWD-Chr5 f 98.25 3.134 104.4127 92.0873
B6.PWD-Chr5 m 97.5 3.134 103.6627 91.3373
B6.PWD-Chr6 f 86.75 3.134 92.9127 80.5873
B6.PWD-Chr6 m 99.5 3.134 105.6627 93.3373
B6.PWD-Chr8 f 93.6 3.9643 101.3952 85.8048
B6.PWD-Chr8 m 96.6667 3.6189 103.7827 89.5506
B6.PWD-Chr9 f 94.875 3.134 101.0377 88.7123
B6.PWD-Chr9 m 102.5 3.134 108.6627 96.3373
B6.PWD-ChrX.1 f 104.3333 3.6189 111.4494 97.2173
B6.PWD-ChrX.1 m 105.25 3.134 111.4127 99.0873
B6.PWD-ChrX.2 f 93.75 3.134 99.9127 87.5873
B6.PWD-ChrX.2 m 101.0 3.3504 107.5882 94.4118
B6.PWD-ChrX.3 f 95.75 3.134 101.9127 89.5873
B6.PWD-ChrX.3 m 99.875 3.134 106.0377 93.7123
B6.PWD-ChrY f 104.0 3.3504 110.5882 97.4118
B6.PWD-ChrY m 105.5714 3.3504 112.1596 98.9833
B6.PWD-mt f 99.875 3.134 106.0377 93.7123
B6.PWD-mt m 100.625 3.134 106.7877 94.4623
C57BL/6J f 104.25 3.134 110.4127 98.0873
C57BL/6J m 103.875 3.134 110.0377 97.7123
PWD/PhJ f 80.8571 3.3504 87.4453 74.269
PWD/PhJ m 73.375 3.134 79.5377 67.2123


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
B6.PWD-Chr1 both 92.8125 2.2161 97.1702 88.4548
B6.PWD-Chr10.1 both 101.8125 2.2161 106.1702 97.4548
B6.PWD-Chr10.2 both 103.9375 2.2161 108.2952 99.5798
B6.PWD-Chr10.3 both 103.25 2.2161 107.6077 98.8923
B6.PWD-Chr11.1 both 99.9375 2.2161 104.2952 95.5798
B6.PWD-Chr11.2 both 95.7143 2.3691 100.3728 91.0557
B6.PWD-Chr11.3 both 99.5 2.2161 103.8577 95.1423
B6.PWD-Chr12 both 104.625 2.2161 108.9827 100.2673
B6.PWD-Chr13 both 93.25 2.2161 97.6077 88.8923
B6.PWD-Chr14 both 104.75 2.2161 109.1077 100.3923
B6.PWD-Chr15 both 96.75 2.2161 101.1077 92.3923
B6.PWD-Chr16 both 100.5 2.2161 104.8577 96.1423
B6.PWD-Chr17 both 95.0625 2.3936 99.7693 90.3557
B6.PWD-Chr18 both 100.25 2.2161 104.6077 95.8923
B6.PWD-Chr19 both 94.2946 2.2939 98.8053 89.784
B6.PWD-Chr2 both 84.0625 2.2161 88.4202 79.7048
B6.PWD-Chr3 both 100.7708 3.0006 106.6711 94.8705
B6.PWD-Chr5 both 97.875 2.2161 102.2327 93.5173
B6.PWD-Chr6 both 93.125 2.2161 97.4827 88.7673
B6.PWD-Chr8 both 95.1333 2.6838 100.4107 89.8559
B6.PWD-Chr9 both 98.6875 2.2161 103.0452 94.3298
B6.PWD-ChrX.1 both 104.7917 2.3936 109.4985 100.0849
B6.PWD-ChrX.2 both 97.375 2.2939 101.8856 92.8644
B6.PWD-ChrX.3 both 97.8125 2.2161 102.1702 93.4548
B6.PWD-ChrY both 104.7857 2.3691 109.4443 100.1272
B6.PWD-mt both 100.25 2.2161 104.6077 95.8923
C57BL/6J both 104.0625 2.2161 108.4202 99.7048
PWD/PhJ both 77.1161 2.2939 81.6267 72.6055




GWAS analysis not available: Strain panel must be either Inbred, HMDP, BXD, BXH, CXB, or AXB/BXA