Project measure / variable:   Donahue4   episode_horiz

ID, description, units MPD:41302   episode_horiz   number of discrete horizontal episodes, 10 min test   [n]  
Data set, strains Donahue4   B6.PWD consomic w/par   28 strains     sex: both     age: 6wks
Procedure open field test
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  STRAIN COMPARISON PLOT
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Donahue4 - number of discrete horizontal episodes, 10 min test



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested28 strains28 strains
Mean of the strain means144   n 144   n
Median of the strain means144   n 147   n
SD of the strain means± 8.90 ± 8.14
Coefficient of variation (CV)0.0618 0.0565
Min–max range of strain means123   –   162   n 126   –   157   n
Mean sample size per strain7.8   mice 7.7   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 7.2889 7.2889 0.0486 0.8256
strain 27 24582.5673 910.4655 6.071 < 0.0001
sex:strain 27 4811.5595 178.2059 1.1883 0.2398
Residuals 371 55639.0714 149.9705


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
B6.PWD-Chr1 f 138.0 10.8   8 3.82 0.0782 125.0, 154.0 -0.67
B6.PWD-Chr1 m 126.0 19.3   8 6.84 0.154 92.0, 152.0 -2.22
B6.PWD-Chr10.1 f 146.0 11.0   8 3.9 0.0755 131.0, 165.0 0.23
B6.PWD-Chr10.1 m 154.0 10.6   8 3.74 0.0689 139.0, 168.0 1.22
B6.PWD-Chr10.2 f 153.0 12.6   8 4.46 0.0825 133.0, 164.0 1.02
B6.PWD-Chr10.2 m 153.0 10.2   8 3.6 0.0663 136.0, 165.0 1.1
B6.PWD-Chr10.3 f 142.0 9.53   8 3.37 0.0674 125.0, 157.0 -0.22
B6.PWD-Chr10.3 m 147.0 9.36   8 3.31 0.0635 133.0, 160.0 0.36
B6.PWD-Chr11.1 f 140.0 8.75   8 3.09 0.0624 127.0, 150.0 -0.45
B6.PWD-Chr11.1 m 144.0 7.96   8 2.82 0.0553 128.0, 154.0 -0.01
B6.PWD-Chr11.2 f 123.0 17.1   7 6.45 0.139 106.0, 149.0 -2.36
B6.PWD-Chr11.2 m 126.0 12.3   7 4.64 0.0974 106.0, 147.0 -2.22
B6.PWD-Chr11.3 f 142.0 16.9   8 5.98 0.119 109.0, 163.0 -0.22
B6.PWD-Chr11.3 m 132.0 11.7   8 4.15 0.0889 112.0, 147.0 -1.48
B6.PWD-Chr12 f 146.0 10.6   8 3.74 0.0727 133.0, 160.0 0.23
B6.PWD-Chr12 m 150.0 6.0   8 2.12 0.0399 141.0, 159.0 0.73
B6.PWD-Chr13 f 150.0 9.19   8 3.25 0.0612 134.0, 165.0 0.68
B6.PWD-Chr13 m 149.0 9.89   8 3.5 0.0663 127.0, 160.0 0.61
B6.PWD-Chr14 f 150.0 13.1   8 4.63 0.0872 139.0, 181.0 0.68
B6.PWD-Chr14 m 151.0 8.72   8 3.08 0.0579 139.0, 159.0 0.85
B6.PWD-Chr15 f 145.0 11.5   8 4.05 0.0789 127.0, 161.0 0.12
B6.PWD-Chr15 m 143.0 14.8   8 5.25 0.104 120.0, 162.0 -0.13
B6.PWD-Chr16 f 141.0 7.96   8 2.82 0.0565 133.0, 154.0 -0.33
B6.PWD-Chr16 m 138.0 10.6   8 3.75 0.0768 117.0, 151.0 -0.75
B6.PWD-Chr17 f 140.0 15.8   8 5.58 0.112 116.0, 163.0 -0.45
B6.PWD-Chr17 m 141.0 15.5   6 6.34 0.11 120.0, 157.0 -0.38
B6.PWD-Chr18 f 141.0 11.5   8 4.06 0.0813 121.0, 156.0 -0.33
B6.PWD-Chr18 m 148.0 4.0   8 1.41 0.0271 142.0, 154.0 0.48
B6.PWD-Chr19 f 143.0 10.4   8 3.68 0.0728 132.0, 162.0 -0.11
B6.PWD-Chr19 m 150.0 13.7   7 5.19 0.0917 130.0, 170.0 0.73
B6.PWD-Chr2 f 162.0 5.73   8 2.03 0.0354 155.0, 172.0 2.03
B6.PWD-Chr2 m 150.0 23.8   8 8.42 0.159 99.0, 182.0 0.73
B6.PWD-Chr3 f 155.0 10.9   8 3.85 0.0701 141.0, 178.0 1.24
B6.PWD-Chr3 m 157.0 9.54   3 5.51 0.0608 146.0, 163.0 1.59
B6.PWD-Chr5 f 144.0 13.4   8 4.75 0.0937 116.0, 163.0 0.0
B6.PWD-Chr5 m 147.0 15.8   8 5.57 0.107 127.0, 172.0 0.36
B6.PWD-Chr6 f 126.0 13.1   8 4.64 0.104 108.0, 146.0 -2.02
B6.PWD-Chr6 m 139.0 10.8   8 3.82 0.0779 123.0, 156.0 -0.62
B6.PWD-Chr8 f 154.0 13.5   5 6.06 0.088 136.0, 169.0 1.13
B6.PWD-Chr8 m 148.0 13.0   6 5.33 0.0885 132.0, 167.0 0.48
B6.PWD-Chr9 f 147.0 11.7   8 4.14 0.0797 131.0, 167.0 0.34
B6.PWD-Chr9 m 148.0 8.47   8 2.99 0.0574 136.0, 164.0 0.48
B6.PWD-ChrX.1 f 144.0 14.6   6 5.96 0.101 116.0, 155.0 0.0
B6.PWD-ChrX.1 m 144.0 10.1   8 3.57 0.0703 131.0, 161.0 -0.01
B6.PWD-ChrX.2 f 150.0 9.05   8 3.2 0.0602 134.0, 161.0 0.68
B6.PWD-ChrX.2 m 148.0 4.75   7 1.8 0.032 140.0, 155.0 0.48
B6.PWD-ChrX.3 f 124.0 18.3   8 6.47 0.147 90.0, 151.0 -2.24
B6.PWD-ChrX.3 m 136.0 11.6   8 4.1 0.0854 120.0, 152.0 -0.99
B6.PWD-ChrY f 150.0 8.96   7 3.39 0.0596 138.0, 163.0 0.68
B6.PWD-ChrY m 146.0 7.48   7 2.83 0.0513 137.0, 161.0 0.24
B6.PWD-mt f 152.0 8.11   8 2.87 0.0533 141.0, 166.0 0.9
B6.PWD-mt m 142.0 9.44   8 3.34 0.0663 122.0, 151.0 -0.25
C57BL/6J f 144.0 11.5   8 4.05 0.0795 126.0, 161.0 0.0
C57BL/6J m 148.0 10.6   8 3.74 0.0715 134.0, 165.0 0.48
PWD/PhJ f 139.0 19.4   7 7.35 0.139 115.0, 168.0 -0.56
PWD/PhJ m 129.0 18.3   8 6.47 0.142 107.0, 166.0 -1.85


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
B6.PWD-Chr1 f 138.25 4.3297 146.7638 129.7362
B6.PWD-Chr1 m 125.625 4.3297 134.1388 117.1112
B6.PWD-Chr10.1 f 146.0 4.3297 154.5138 137.4862
B6.PWD-Chr10.1 m 153.625 4.3297 162.1388 145.1112
B6.PWD-Chr10.2 f 152.75 4.3297 161.2638 144.2362
B6.PWD-Chr10.2 m 153.375 4.3297 161.8888 144.8612
B6.PWD-Chr10.3 f 141.5 4.3297 150.0138 132.9862
B6.PWD-Chr10.3 m 147.375 4.3297 155.8888 138.8612
B6.PWD-Chr11.1 f 140.25 4.3297 148.7638 131.7362
B6.PWD-Chr11.1 m 144.0 4.3297 152.5138 135.4862
B6.PWD-Chr11.2 f 122.5714 4.6286 131.6731 113.4698
B6.PWD-Chr11.2 m 126.1429 4.6286 135.2445 117.0412
B6.PWD-Chr11.3 f 141.5 4.3297 150.0138 132.9862
B6.PWD-Chr11.3 m 131.875 4.3297 140.3888 123.3612
B6.PWD-Chr12 f 145.5 4.3297 154.0138 136.9862
B6.PWD-Chr12 m 150.375 4.3297 158.8888 141.8612
B6.PWD-Chr13 f 150.125 4.3297 158.6388 141.6112
B6.PWD-Chr13 m 149.125 4.3297 157.6388 140.6112
B6.PWD-Chr14 f 150.25 4.3297 158.7638 141.7362
B6.PWD-Chr14 m 150.625 4.3297 159.1388 142.1112
B6.PWD-Chr15 f 145.375 4.3297 153.8888 136.8612
B6.PWD-Chr15 m 143.0 4.3297 151.5138 134.4862
B6.PWD-Chr16 f 141.0 4.3297 149.5138 132.4862
B6.PWD-Chr16 m 138.125 4.3297 146.6388 129.6112
B6.PWD-Chr17 f 140.375 4.3297 148.8888 131.8612
B6.PWD-Chr17 m 141.0 4.9995 150.8309 131.1691
B6.PWD-Chr18 f 141.25 4.3297 149.7638 132.7362
B6.PWD-Chr18 m 147.625 4.3297 156.1388 139.1112
B6.PWD-Chr19 f 143.0 4.3297 151.5138 134.4862
B6.PWD-Chr19 m 149.5714 4.6286 158.6731 140.4698
B6.PWD-Chr2 f 162.0 4.3297 170.5138 153.4862
B6.PWD-Chr2 m 150.125 4.3297 158.6388 141.6112
B6.PWD-Chr3 f 155.125 4.3297 163.6388 146.6112
B6.PWD-Chr3 m 157.0 7.0704 170.903 143.097
B6.PWD-Chr5 f 143.5 4.3297 152.0138 134.9862
B6.PWD-Chr5 m 147.0 4.3297 155.5138 138.4862
B6.PWD-Chr6 f 126.25 4.3297 134.7638 117.7362
B6.PWD-Chr6 m 138.75 4.3297 147.2638 130.2362
B6.PWD-Chr8 f 154.0 5.4767 164.7692 143.2308
B6.PWD-Chr8 m 147.5 4.9995 157.3309 137.6691
B6.PWD-Chr9 f 147.0 4.3297 155.5138 138.4862
B6.PWD-Chr9 m 147.5 4.3297 156.0138 138.9862
B6.PWD-ChrX.1 f 144.0 4.9995 153.8309 134.1691
B6.PWD-ChrX.1 m 143.625 4.3297 152.1388 135.1112
B6.PWD-ChrX.2 f 150.375 4.3297 158.8888 141.8612
B6.PWD-ChrX.2 m 148.2857 4.6286 157.3874 139.184
B6.PWD-ChrX.3 f 124.5 4.3297 133.0138 115.9862
B6.PWD-ChrX.3 m 135.875 4.3297 144.3888 127.3612
B6.PWD-ChrY f 150.4286 4.6286 159.5302 141.3269
B6.PWD-ChrY m 145.7143 4.6286 154.816 136.6126
B6.PWD-mt f 152.0 4.3297 160.5138 143.4862
B6.PWD-mt m 142.25 4.3297 150.7638 133.7362
C57BL/6J f 144.25 4.3297 152.7638 135.7362
C57BL/6J m 148.125 4.3297 156.6388 139.6112
PWD/PhJ f 139.4286 4.6286 148.5302 130.3269
PWD/PhJ m 128.625 4.3297 137.1388 120.1112


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
B6.PWD-Chr1 both 131.9375 3.0616 137.9577 125.9173
B6.PWD-Chr10.1 both 149.8125 3.0616 155.8327 143.7923
B6.PWD-Chr10.2 both 153.0625 3.0616 159.0827 147.0423
B6.PWD-Chr10.3 both 144.4375 3.0616 150.4577 138.4173
B6.PWD-Chr11.1 both 142.125 3.0616 148.1452 136.1048
B6.PWD-Chr11.2 both 124.3571 3.2729 130.793 117.9213
B6.PWD-Chr11.3 both 136.6875 3.0616 142.7077 130.6673
B6.PWD-Chr12 both 147.9375 3.0616 153.9577 141.9173
B6.PWD-Chr13 both 149.625 3.0616 155.6452 143.6048
B6.PWD-Chr14 both 150.4375 3.0616 156.4577 144.4173
B6.PWD-Chr15 both 144.1875 3.0616 150.2077 138.1673
B6.PWD-Chr16 both 139.5625 3.0616 145.5827 133.5423
B6.PWD-Chr17 both 140.6875 3.3069 147.19 134.185
B6.PWD-Chr18 both 144.4375 3.0616 150.4577 138.4173
B6.PWD-Chr19 both 146.2857 3.169 152.5172 140.0542
B6.PWD-Chr2 both 156.0625 3.0616 162.0827 150.0423
B6.PWD-Chr3 both 156.0625 4.1454 164.2139 147.9111
B6.PWD-Chr5 both 145.25 3.0616 151.2702 139.2298
B6.PWD-Chr6 both 132.5 3.0616 138.5202 126.4798
B6.PWD-Chr8 both 150.75 3.7077 158.0408 143.4592
B6.PWD-Chr9 both 147.25 3.0616 153.2702 141.2298
B6.PWD-ChrX.1 both 143.8125 3.3069 150.315 137.31
B6.PWD-ChrX.2 both 149.3304 3.169 155.5618 143.0989
B6.PWD-ChrX.3 both 130.1875 3.0616 136.2077 124.1673
B6.PWD-ChrY both 148.0714 3.2729 154.5073 141.6356
B6.PWD-mt both 147.125 3.0616 153.1452 141.1048
C57BL/6J both 146.1875 3.0616 152.2077 140.1673
PWD/PhJ both 134.0268 3.169 140.2583 127.7953




GWAS analysis not available: Strain panel must be either Inbred, HMDP, BXD, BXH, CXB, or AXB/BXA