Project measure / variable:   Donahue4   breaks_horiz

ID, description, units MPD:41301   breaks_horiz   total number of horizontal beam breaks, 10 min test   [n]  
Data set, strains Donahue4   B6.PWD consomic w/par   28 strains     sex: both     age: 6wks
Procedure open field test
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  STRAIN COMPARISON PLOT
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Donahue4 - total number of horizontal beam breaks, 10 min test



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested28 strains28 strains
Mean of the strain means3059   n 3154   n
Median of the strain means3105   n 3233   n
SD of the strain means± 408 ± 406
Coefficient of variation (CV)0.133 0.129
Min–max range of strain means2159   –   3836   n 2073   –   3741   n
Mean sample size per strain7.8   mice 7.7   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 1003330.0575 1003330.0575 5.1624 0.0237
strain 27 55912278.1083 2070825.1151 10.655 < 0.0001
sex:strain 27 11250560.8459 416687.4387 2.144 0.001
Residuals 371 72104754.0 194352.4367


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
B6.PWD-Chr1 f 2570.0 474.0   8 168.0 0.185 1851.0, 3187.0 -1.2
B6.PWD-Chr1 m 2457.0 296.0   8 105.0 0.12 2069.0, 3064.0 -1.72
B6.PWD-Chr10.1 f 3189.0 397.0   8 140.0 0.125 2747.0, 4054.0 0.32
B6.PWD-Chr10.1 m 3535.0 687.0   8 243.0 0.194 2737.0, 4837.0 0.94
B6.PWD-Chr10.2 f 3525.0 320.0   8 113.0 0.0909 3055.0, 3894.0 1.14
B6.PWD-Chr10.2 m 3274.0 418.0   8 148.0 0.128 2727.0, 4015.0 0.29
B6.PWD-Chr10.3 f 2934.0 344.0   8 122.0 0.117 2236.0, 3251.0 -0.31
B6.PWD-Chr10.3 m 3230.0 263.0   8 92.9 0.0814 2926.0, 3660.0 0.19
B6.PWD-Chr11.1 f 3008.0 286.0   8 101.0 0.0951 2676.0, 3438.0 -0.13
B6.PWD-Chr11.1 m 3301.0 299.0   8 106.0 0.0905 2805.0, 3727.0 0.36
B6.PWD-Chr11.2 f 2531.0 490.0   7 185.0 0.194 1841.0, 3193.0 -1.29
B6.PWD-Chr11.2 m 2691.0 331.0   7 125.0 0.123 2351.0, 3266.0 -1.14
B6.PWD-Chr11.3 f 2958.0 582.0   8 206.0 0.197 2214.0, 3709.0 -0.25
B6.PWD-Chr11.3 m 2887.0 537.0   8 190.0 0.186 2168.0, 3668.0 -0.66
B6.PWD-Chr12 f 3637.0 716.0   8 253.0 0.197 2733.0, 4699.0 1.41
B6.PWD-Chr12 m 3741.0 283.0   8 100.0 0.0757 3389.0, 4278.0 1.45
B6.PWD-Chr13 f 3301.0 363.0   8 129.0 0.11 2846.0, 3937.0 0.59
B6.PWD-Chr13 m 3502.0 549.0   8 194.0 0.157 2988.0, 4591.0 0.86
B6.PWD-Chr14 f 3533.0 445.0   8 157.0 0.126 3031.0, 4362.0 1.16
B6.PWD-Chr14 m 3705.0 479.0   8 169.0 0.129 3018.0, 4395.0 1.36
B6.PWD-Chr15 f 3217.0 493.0   8 174.0 0.153 2245.0, 3766.0 0.39
B6.PWD-Chr15 m 3046.0 472.0   8 167.0 0.155 2046.0, 3629.0 -0.27
B6.PWD-Chr16 f 3315.0 494.0   8 175.0 0.149 2508.0, 4066.0 0.63
B6.PWD-Chr16 m 3467.0 588.0   8 208.0 0.17 2514.0, 3992.0 0.77
B6.PWD-Chr17 f 2887.0 333.0   8 118.0 0.115 2404.0, 3251.0 -0.42
B6.PWD-Chr17 m 2394.0 409.0   6 167.0 0.171 1882.0, 2892.0 -1.87
B6.PWD-Chr18 f 2975.0 475.0   8 168.0 0.16 2347.0, 3873.0 -0.21
B6.PWD-Chr18 m 3140.0 484.0   8 171.0 0.154 2522.0, 3733.0 -0.04
B6.PWD-Chr19 f 2566.0 256.0   8 90.4 0.0996 2200.0, 2811.0 -1.21
B6.PWD-Chr19 m 3269.0 362.0   7 137.0 0.111 2869.0, 3857.0 0.28
B6.PWD-Chr2 f 3399.0 405.0   8 143.0 0.119 2640.0, 3861.0 0.83
B6.PWD-Chr2 m 2913.0 663.0   8 234.0 0.228 1521.0, 3702.0 -0.59
B6.PWD-Chr3 f 3458.0 326.0   8 115.0 0.0944 2923.0, 3894.0 0.98
B6.PWD-Chr3 m 3472.0 316.0   3 182.0 0.091 3285.0, 3837.0 0.78
B6.PWD-Chr5 f 2754.0 393.0   8 139.0 0.143 2162.0, 3228.0 -0.75
B6.PWD-Chr5 m 2908.0 445.0   8 157.0 0.153 2344.0, 3662.0 -0.61
B6.PWD-Chr6 f 2381.0 418.0   8 148.0 0.176 1788.0, 3135.0 -1.66
B6.PWD-Chr6 m 3236.0 451.0   8 159.0 0.139 2629.0, 3978.0 0.2
B6.PWD-Chr8 f 2867.0 572.0   5 256.0 0.199 1960.0, 3446.0 -0.47
B6.PWD-Chr8 m 2973.0 488.0   6 199.0 0.164 2104.0, 3366.0 -0.45
B6.PWD-Chr9 f 3021.0 483.0   8 171.0 0.16 2284.0, 3818.0 -0.09
B6.PWD-Chr9 m 3726.0 444.0   8 157.0 0.119 3079.0, 4515.0 1.41
B6.PWD-ChrX.1 f 3836.0 407.0   6 166.0 0.106 3366.0, 4494.0 1.9
B6.PWD-ChrX.1 m 3489.0 555.0   8 196.0 0.159 2625.0, 4384.0 0.82
B6.PWD-ChrX.2 f 3191.0 435.0   8 154.0 0.136 2541.0, 3976.0 0.32
B6.PWD-ChrX.2 m 3017.0 393.0   7 149.0 0.13 2353.0, 3390.0 -0.34
B6.PWD-ChrX.3 f 2546.0 404.0   8 143.0 0.159 2106.0, 3183.0 -1.26
B6.PWD-ChrX.3 m 2971.0 399.0   8 141.0 0.134 2418.0, 3460.0 -0.45
B6.PWD-ChrY f 3289.0 374.0   7 141.0 0.114 2886.0, 4024.0 0.56
B6.PWD-ChrY m 3324.0 341.0   7 129.0 0.102 2683.0, 3648.0 0.42
B6.PWD-mt f 3312.0 290.0   8 103.0 0.0877 2791.0, 3646.0 0.62
B6.PWD-mt m 3153.0 446.0   8 158.0 0.142 2644.0, 3690.0 0.0
C57BL/6J f 3301.0 481.0   8 170.0 0.146 2729.0, 4268.0 0.59
C57BL/6J m 3426.0 314.0   8 111.0 0.0918 3152.0, 3990.0 0.67
PWD/PhJ f 2159.0 438.0   7 166.0 0.203 1592.0, 2582.0 -2.2
PWD/PhJ m 2073.0 305.0   8 108.0 0.147 1600.0, 2584.0 -2.66


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
B6.PWD-Chr1 f 2570.25 155.8655 2876.7406 2263.7594
B6.PWD-Chr1 m 2456.75 155.8655 2763.2406 2150.2594
B6.PWD-Chr10.1 f 3188.625 155.8655 3495.1156 2882.1344
B6.PWD-Chr10.1 m 3535.0 155.8655 3841.4906 3228.5094
B6.PWD-Chr10.2 f 3524.625 155.8655 3831.1156 3218.1344
B6.PWD-Chr10.2 m 3274.125 155.8655 3580.6156 2967.6344
B6.PWD-Chr10.3 f 2934.0 155.8655 3240.4906 2627.5094
B6.PWD-Chr10.3 m 3229.75 155.8655 3536.2406 2923.2594
B6.PWD-Chr11.1 f 3007.5 155.8655 3313.9906 2701.0094
B6.PWD-Chr11.1 m 3300.875 155.8655 3607.3656 2994.3844
B6.PWD-Chr11.2 f 2530.5714 166.6272 2858.2237 2202.9192
B6.PWD-Chr11.2 m 2691.2857 166.6272 3018.938 2363.6335
B6.PWD-Chr11.3 f 2957.875 155.8655 3264.3656 2651.3844
B6.PWD-Chr11.3 m 2886.75 155.8655 3193.2406 2580.2594
B6.PWD-Chr12 f 3636.875 155.8655 3943.3656 3330.3844
B6.PWD-Chr12 m 3741.0 155.8655 4047.4906 3434.5094
B6.PWD-Chr13 f 3301.125 155.8655 3607.6156 2994.6344
B6.PWD-Chr13 m 3502.0 155.8655 3808.4906 3195.5094
B6.PWD-Chr14 f 3533.25 155.8655 3839.7406 3226.7594
B6.PWD-Chr14 m 3705.375 155.8655 4011.8656 3398.8844
B6.PWD-Chr15 f 3217.375 155.8655 3523.8656 2910.8844
B6.PWD-Chr15 m 3046.375 155.8655 3352.8656 2739.8844
B6.PWD-Chr16 f 3315.25 155.8655 3621.7406 3008.7594
B6.PWD-Chr16 m 3466.75 155.8655 3773.2406 3160.2594
B6.PWD-Chr17 f 2887.375 155.8655 3193.8656 2580.8844
B6.PWD-Chr17 m 2394.5 179.978 2748.4049 2040.5951
B6.PWD-Chr18 f 2975.25 155.8655 3281.7406 2668.7594
B6.PWD-Chr18 m 3140.5 155.8655 3446.9906 2834.0094
B6.PWD-Chr19 f 2565.875 155.8655 2872.3656 2259.3844
B6.PWD-Chr19 m 3269.0 166.6272 3596.6523 2941.3477
B6.PWD-Chr2 f 3399.375 155.8655 3705.8656 3092.8844
B6.PWD-Chr2 m 2912.625 155.8655 3219.1156 2606.1344
B6.PWD-Chr3 f 3457.625 155.8655 3764.1156 3151.1344
B6.PWD-Chr3 m 3472.3333 254.5273 3972.8304 2971.8362
B6.PWD-Chr5 f 2754.125 155.8655 3060.6156 2447.6344
B6.PWD-Chr5 m 2907.875 155.8655 3214.3656 2601.3844
B6.PWD-Chr6 f 2380.875 155.8655 2687.3656 2074.3844
B6.PWD-Chr6 m 3235.75 155.8655 3542.2406 2929.2594
B6.PWD-Chr8 f 2867.0 197.156 3254.6834 2479.3166
B6.PWD-Chr8 m 2973.3333 179.978 3327.2382 2619.4285
B6.PWD-Chr9 f 3020.625 155.8655 3327.1156 2714.1344
B6.PWD-Chr9 m 3726.5 155.8655 4032.9906 3420.0094
B6.PWD-ChrX.1 f 3835.5 179.978 4189.4049 3481.5951
B6.PWD-ChrX.1 m 3489.125 155.8655 3795.6156 3182.6344
B6.PWD-ChrX.2 f 3190.75 155.8655 3497.2406 2884.2594
B6.PWD-ChrX.2 m 3016.8571 166.6272 3344.5094 2689.2049
B6.PWD-ChrX.3 f 2545.75 155.8655 2852.2406 2239.2594
B6.PWD-ChrX.3 m 2971.375 155.8655 3277.8656 2664.8844
B6.PWD-ChrY f 3288.8571 166.6272 3616.5094 2961.2049
B6.PWD-ChrY m 3324.2857 166.6272 3651.938 2996.6335
B6.PWD-mt f 3312.0 155.8655 3618.4906 3005.5094
B6.PWD-mt m 3152.625 155.8655 3459.1156 2846.1344
C57BL/6J f 3301.125 155.8655 3607.6156 2994.6344
C57BL/6J m 3425.875 155.8655 3732.3656 3119.3844
PWD/PhJ f 2159.4286 166.6272 2487.0808 1831.7763
PWD/PhJ m 2073.25 155.8655 2379.7406 1766.7594


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
B6.PWD-Chr1 both 2513.5 110.2136 2730.2216 2296.7784
B6.PWD-Chr10.1 both 3361.8125 110.2136 3578.5341 3145.0909
B6.PWD-Chr10.2 both 3399.375 110.2136 3616.0966 3182.6534
B6.PWD-Chr10.3 both 3081.875 110.2136 3298.5966 2865.1534
B6.PWD-Chr11.1 both 3154.1875 110.2136 3370.9091 2937.4659
B6.PWD-Chr11.2 both 2610.9286 117.8232 2842.6137 2379.2434
B6.PWD-Chr11.3 both 2922.3125 110.2136 3139.0341 2705.5909
B6.PWD-Chr12 both 3688.9375 110.2136 3905.6591 3472.2159
B6.PWD-Chr13 both 3401.5625 110.2136 3618.2841 3184.8409
B6.PWD-Chr14 both 3619.3125 110.2136 3836.0341 3402.5909
B6.PWD-Chr15 both 3131.875 110.2136 3348.5966 2915.1534
B6.PWD-Chr16 both 3391.0 110.2136 3607.7216 3174.2784
B6.PWD-Chr17 both 2640.9375 119.0442 2875.0236 2406.8514
B6.PWD-Chr18 both 3057.875 110.2136 3274.5966 2841.1534
B6.PWD-Chr19 both 2917.4375 114.0819 3141.7657 2693.1093
B6.PWD-Chr2 both 3156.0 110.2136 3372.7216 2939.2784
B6.PWD-Chr3 both 3464.9792 149.2299 3758.4216 3171.5367
B6.PWD-Chr5 both 2831.0 110.2136 3047.7216 2614.2784
B6.PWD-Chr6 both 2808.3125 110.2136 3025.0341 2591.5909
B6.PWD-Chr8 both 2920.1667 133.4752 3182.6296 2657.7038
B6.PWD-Chr9 both 3373.5625 110.2136 3590.2841 3156.8409
B6.PWD-ChrX.1 both 3662.3125 119.0442 3896.3986 3428.2264
B6.PWD-ChrX.2 both 3103.8036 114.0819 3328.1317 2879.4754
B6.PWD-ChrX.3 both 2758.5625 110.2136 2975.2841 2541.8409
B6.PWD-ChrY both 3306.5714 117.8232 3538.2566 3074.8863
B6.PWD-mt both 3232.3125 110.2136 3449.0341 3015.5909
C57BL/6J both 3363.5 110.2136 3580.2216 3146.7784
PWD/PhJ both 2116.3393 114.0819 2340.6674 1892.0111




GWAS analysis not available: Strain panel must be either Inbred, HMDP, BXD, BXH, CXB, or AXB/BXA