Project measure / variable:   Donahue3   duration_poke

ID, description, units MPD:37719   duration_poke   duration of nose pokes, 10 min test   [s]  
Data set, strains Donahue3   B6.A consomic w/par   22 strains     sex: both     age: 6-7wks
Procedure hole board test
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  STRAIN COMPARISON PLOT
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Donahue3 - duration of nose pokes, 10 min test



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested22 strains22 strains
Mean of the strain means0.636   s 0.630   s
Median of the strain means0.640   s 0.629   s
SD of the strain means± 0.0848 ± 0.0926
Coefficient of variation (CV)0.133 0.147
Min–max range of strain means0.483   –   0.814   s 0.483   –   0.826   s
Mean sample size per strain8.0   mice 8.0   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 0.0035 0.0035 0.1269 0.7219
strain 21 1.6444 0.0783 2.8419 < 0.0001
sex:strain 21 1.0042 0.0478 1.7355 0.0249
Residuals 307 8.4588 0.0276


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
A/J f 0.681 0.17   8 0.06 0.25 0.41, 0.977 0.53
A/J m 0.576 0.165   8 0.0582 0.286 0.353, 0.872 -0.58
B6.A-Chr1 f 0.72 0.186   8 0.0657 0.258 0.438, 1.02 0.99
B6.A-Chr1 m 0.826 0.343   8 0.121 0.415 0.533, 1.56 2.12
B6.A-Chr10 f 0.585 0.128   8 0.0451 0.218 0.375, 0.757 -0.6
B6.A-Chr10 m 0.692 0.17   8 0.06 0.245 0.443, 0.974 0.67
B6.A-Chr11 f 0.607 0.169   8 0.0599 0.279 0.459, 0.949 -0.34
B6.A-Chr11 m 0.549 0.105   8 0.0373 0.192 0.389, 0.716 -0.87
B6.A-Chr12 f 0.646 0.122   7 0.0459 0.188 0.498, 0.836 0.12
B6.A-Chr12 m 0.801 0.208   8 0.0737 0.26 0.506, 1.09 1.85
B6.A-Chr13 f 0.721 0.227   8 0.0804 0.315 0.421, 0.964 1.0
B6.A-Chr13 m 0.495 0.0788   8 0.0279 0.159 0.385, 0.654 -1.45
B6.A-Chr14 f 0.693 0.124   8 0.0437 0.178 0.525, 0.939 0.67
B6.A-Chr14 m 0.622 0.161   8 0.057 0.259 0.402, 0.848 -0.08
B6.A-Chr15 f 0.745 0.201   8 0.0711 0.27 0.452, 1.12 1.28
B6.A-Chr15 m 0.724 0.231   8 0.0817 0.319 0.384, 1.0 1.02
B6.A-Chr16 f 0.582 0.159   8 0.0564 0.274 0.43, 0.84 -0.64
B6.A-Chr16 m 0.601 0.178   8 0.063 0.297 0.356, 0.871 -0.31
B6.A-Chr17 f 0.485 0.122   8 0.0431 0.251 0.263, 0.637 -1.78
B6.A-Chr17 m 0.504 0.064   8 0.0226 0.127 0.435, 0.621 -1.36
B6.A-Chr18 f 0.814 0.193   8 0.0683 0.237 0.494, 1.19 2.1
B6.A-Chr18 m 0.706 0.108   8 0.0382 0.153 0.476, 0.831 0.82
B6.A-Chr19 f 0.683 0.183   8 0.0646 0.268 0.44, 0.886 0.55
B6.A-Chr19 m 0.657 0.138   8 0.0487 0.21 0.43, 0.83 0.3
B6.A-Chr2 f 0.591 0.0967   8 0.0342 0.164 0.465, 0.763 -0.53
B6.A-Chr2 m 0.483 0.128   8 0.0453 0.265 0.287, 0.639 -1.58
B6.A-Chr3 f 0.547 0.0719   8 0.0254 0.131 0.411, 0.648 -1.05
B6.A-Chr3 m 0.611 0.128   8 0.0452 0.209 0.483, 0.781 -0.2
B6.A-Chr4 f 0.59 0.127   8 0.0448 0.215 0.497, 0.852 -0.55
B6.A-Chr4 m 0.67 0.23   8 0.0813 0.343 0.435, 1.08 0.44
B6.A-Chr5 f 0.642 0.11   8 0.0388 0.171 0.481, 0.797 0.07
B6.A-Chr5 m 0.544 0.0873   8 0.0309 0.16 0.383, 0.65 -0.92
B6.A-Chr6 f 0.483 0.0785   8 0.0278 0.163 0.358, 0.573 -1.81
B6.A-Chr6 m 0.628 0.2   8 0.0706 0.318 0.361, 0.991 -0.02
B6.A-Chr7 f 0.638 0.0949   8 0.0335 0.149 0.536, 0.835 0.02
B6.A-Chr7 m 0.629 0.146   8 0.0516 0.232 0.486, 0.88 -0.01
B6.A-Chr8 f 0.658 0.195   8 0.0691 0.297 0.475, 0.927 0.26
B6.A-Chr8 m 0.644 0.142   8 0.0503 0.221 0.479, 0.924 0.16
B6.A-Chr9 f 0.53 0.191   8 0.0675 0.36 0.153, 0.748 -1.25
B6.A-Chr9 m 0.68 0.274   8 0.0967 0.402 0.416, 1.07 0.54
B6.A-ChrX f 0.625 0.117   8 0.0413 0.187 0.432, 0.764 -0.13
B6.A-ChrX m 0.688 0.239   8 0.0845 0.347 0.44, 1.08 0.63
C57BL/6J f 0.731 0.176   8 0.0623 0.241 0.489, 1.09 1.12
C57BL/6J m 0.522 0.0706   8 0.025 0.135 0.434, 0.628 -1.16


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
A/J f 0.6806 0.0587 0.7961 0.5651
A/J m 0.576 0.0587 0.6915 0.4605
B6.A-Chr1 f 0.7204 0.0587 0.8359 0.6049
B6.A-Chr1 m 0.8264 0.0587 0.9419 0.7109
B6.A-Chr10 f 0.5849 0.0587 0.7004 0.4694
B6.A-Chr10 m 0.6924 0.0587 0.8079 0.5769
B6.A-Chr11 f 0.6065 0.0587 0.722 0.491
B6.A-Chr11 m 0.5494 0.0587 0.6649 0.4339
B6.A-Chr12 f 0.6461 0.0627 0.7696 0.5227
B6.A-Chr12 m 0.8008 0.0587 0.9162 0.6853
B6.A-Chr13 f 0.7209 0.0587 0.8364 0.6054
B6.A-Chr13 m 0.495 0.0587 0.6105 0.3795
B6.A-Chr14 f 0.6931 0.0587 0.8086 0.5776
B6.A-Chr14 m 0.622 0.0587 0.7375 0.5065
B6.A-Chr15 f 0.7447 0.0587 0.8602 0.6293
B6.A-Chr15 m 0.7244 0.0587 0.8399 0.6089
B6.A-Chr16 f 0.5816 0.0587 0.6971 0.4661
B6.A-Chr16 m 0.6011 0.0587 0.7166 0.4856
B6.A-Chr17 f 0.4847 0.0587 0.6002 0.3693
B6.A-Chr17 m 0.5045 0.0587 0.62 0.389
B6.A-Chr18 f 0.8141 0.0587 0.9296 0.6986
B6.A-Chr18 m 0.7065 0.0587 0.822 0.591
B6.A-Chr19 f 0.683 0.0587 0.7985 0.5675
B6.A-Chr19 m 0.6566 0.0587 0.7721 0.5411
B6.A-Chr2 f 0.5906 0.0587 0.7061 0.4751
B6.A-Chr2 m 0.4835 0.0587 0.599 0.368
B6.A-Chr3 f 0.5471 0.0587 0.6626 0.4316
B6.A-Chr3 m 0.6111 0.0587 0.7266 0.4956
B6.A-Chr4 f 0.5904 0.0587 0.7059 0.4749
B6.A-Chr4 m 0.67 0.0587 0.7855 0.5545
B6.A-Chr5 f 0.6421 0.0587 0.7576 0.5266
B6.A-Chr5 m 0.5444 0.0587 0.6599 0.4289
B6.A-Chr6 f 0.4827 0.0587 0.5982 0.3673
B6.A-Chr6 m 0.6285 0.0587 0.744 0.513
B6.A-Chr7 f 0.6379 0.0587 0.7534 0.5224
B6.A-Chr7 m 0.6291 0.0587 0.7446 0.5136
B6.A-Chr8 f 0.6581 0.0587 0.7736 0.5426
B6.A-Chr8 m 0.6437 0.0587 0.7592 0.5283
B6.A-Chr9 f 0.53 0.0587 0.6455 0.4145
B6.A-Chr9 m 0.6799 0.0587 0.7954 0.5644
B6.A-ChrX f 0.6246 0.0587 0.7401 0.5091
B6.A-ChrX m 0.6881 0.0587 0.8036 0.5726
C57BL/6J f 0.7307 0.0587 0.8462 0.6153
C57BL/6J m 0.5216 0.0587 0.6371 0.4061


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
A/J both 0.6283 0.0415 0.71 0.5467
B6.A-Chr1 both 0.7734 0.0415 0.855 0.6917
B6.A-Chr10 both 0.6386 0.0415 0.7203 0.557
B6.A-Chr11 both 0.5779 0.0415 0.6596 0.4963
B6.A-Chr12 both 0.7234 0.043 0.808 0.6389
B6.A-Chr13 both 0.6079 0.0415 0.6896 0.5263
B6.A-Chr14 both 0.6576 0.0415 0.7392 0.5759
B6.A-Chr15 both 0.7346 0.0415 0.8162 0.6529
B6.A-Chr16 both 0.5914 0.0415 0.673 0.5097
B6.A-Chr17 both 0.4946 0.0415 0.5763 0.413
B6.A-Chr18 both 0.7603 0.0415 0.842 0.6787
B6.A-Chr19 both 0.6698 0.0415 0.7515 0.5882
B6.A-Chr2 both 0.5371 0.0415 0.6187 0.4554
B6.A-Chr3 both 0.5791 0.0415 0.6608 0.4975
B6.A-Chr4 both 0.6302 0.0415 0.7118 0.5485
B6.A-Chr5 both 0.5932 0.0415 0.6749 0.5116
B6.A-Chr6 both 0.5556 0.0415 0.6373 0.474
B6.A-Chr7 both 0.6335 0.0415 0.7152 0.5518
B6.A-Chr8 both 0.6509 0.0415 0.7326 0.5693
B6.A-Chr9 both 0.6049 0.0415 0.6866 0.5233
B6.A-ChrX both 0.6564 0.0415 0.738 0.5747
C57BL/6J both 0.6262 0.0415 0.7078 0.5445




GWAS analysis not available: Strain panel must be either Inbred, HMDP, BXD, BXH, CXB, or AXB/BXA