Phenotype measure:   Donahue3   episodes_poke

ID, description, units MPD:37718   episodes_poke   number of nose pokes, 10 min test   [n]
Data set, strains Donahue3   B6.A consomic w/par   22 strains     sex: both     age: 6-7wks
Procedure hole board test
Ontology mappings

  STRAIN COMPARISON PLOT
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Donahue3 - number of nose pokes, 10 min test



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested22 strains22 strains
Mean of the strain means28.7   n 26.9   n
Median of the strain means28.8   n 25.5   n
SD of the strain means± 6.33 ± 5.72
Coefficient of variation (CV)0.220 0.213
Min–max range of strain means17.0   –   39.9   n 15.2   –   37.6   n
Mean sample size per strain8.0   mice 8.0   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 316.1514 316.1514 3.9815 0.0469
strain 21 9824.9154 467.8531 5.8919 < 0.0001
sex:strain 21 2236.3967 106.4951 1.3411 0.1469
Residuals 306 24298.1964 79.4059


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
A/J f 26.4 9.93   8 3.51 0.376 15.0, 42.0 -0.36
A/J m 24.4 9.96   8 3.52 0.408 10.0, 39.0 -0.43
B6.A-Chr1 f 31.0 9.06   8 3.2 0.292 23.0, 50.0 0.36
B6.A-Chr1 m 30.5 9.38   8 3.32 0.308 17.0, 45.0 0.63
B6.A-Chr10 f 17.0 5.66   8 2.0 0.333 10.0, 25.0 -1.85
B6.A-Chr10 m 24.1 10.3   8 3.65 0.428 10.0, 37.0 -0.48
B6.A-Chr11 f 30.4 13.4   8 4.75 0.442 19.0, 62.0 0.27
B6.A-Chr11 m 25.6 6.41   8 2.27 0.25 19.0, 39.0 -0.22
B6.A-Chr12 f 24.6 10.5   7 3.98 0.428 9.0, 44.0 -0.65
B6.A-Chr12 m 15.2 4.53   8 1.6 0.297 7.0, 22.0 -2.04
B6.A-Chr13 f 28.6 11.3   8 4.0 0.395 14.0, 47.0 -0.02
B6.A-Chr13 m 22.8 7.48   8 2.64 0.329 12.0, 31.0 -0.71
B6.A-Chr14 f 29.9 6.6   8 2.33 0.221 19.0, 39.0 0.19
B6.A-Chr14 m 25.4 4.66   8 1.65 0.184 19.0, 33.0 -0.26
B6.A-Chr15 f 21.4 7.15   8 2.53 0.335 13.0, 34.0 -1.15
B6.A-Chr15 m 22.9 9.36   8 3.31 0.409 14.0, 38.0 -0.69
B6.A-Chr16 f 34.0 10.5   8 3.72 0.31 16.0, 51.0 0.84
B6.A-Chr16 m 25.9 8.18   8 2.89 0.316 14.0, 39.0 -0.17
B6.A-Chr17 f 36.2 13.9   8 4.91 0.383 23.0, 62.0 1.19
B6.A-Chr17 m 29.4 8.16   8 2.88 0.278 16.0, 40.0 0.44
B6.A-Chr18 f 39.9 9.99   8 3.53 0.251 29.0, 58.0 1.77
B6.A-Chr18 m 32.1 6.42   8 2.27 0.2 23.0, 45.0 0.91
B6.A-Chr19 f 32.0 10.0   8 3.54 0.313 23.0, 54.0 0.52
B6.A-Chr19 m 29.5 8.57   8 3.03 0.29 20.0, 47.0 0.46
B6.A-Chr2 f 36.4 8.73   8 3.09 0.24 26.0, 52.0 1.22
B6.A-Chr2 m 36.1 9.06   8 3.2 0.251 23.0, 50.0 1.61
B6.A-Chr3 f 28.9 6.45   8 2.28 0.223 20.0, 39.0 0.03
B6.A-Chr3 m 24.6 5.9   8 2.09 0.24 17.0, 35.0 -0.4
B6.A-Chr4 f 26.9 12.0   8 4.23 0.445 7.0, 44.0 -0.28
B6.A-Chr4 m 25.1 9.95   8 3.52 0.396 8.0, 44.0 -0.31
B6.A-Chr5 f 34.4 4.66   8 1.65 0.136 29.0, 43.0 0.9
B6.A-Chr5 m 32.9 8.61   8 3.04 0.262 24.0, 50.0 1.05
B6.A-Chr6 f 25.4 9.04   8 3.2 0.356 14.0, 38.0 -0.52
B6.A-Chr6 m 23.1 7.34   8 2.59 0.317 9.0, 32.0 -0.66
B6.A-Chr7 f 37.8 9.16   8 3.24 0.243 23.0, 54.0 1.44
B6.A-Chr7 m 37.6 7.54   8 2.67 0.2 28.0, 49.0 1.88
B6.A-Chr8 f 21.0 8.73   8 3.09 0.416 10.0, 36.0 -1.22
B6.A-Chr8 m 30.5 8.64   8 3.05 0.283 18.0, 43.0 0.63
B6.A-Chr9 f 17.1 12.6   7 4.76 0.734 3.0, 35.0 -1.83
B6.A-Chr9 m 18.0 8.9   8 3.15 0.494 8.0, 34.0 -1.55
B6.A-ChrX f 25.5 8.02   8 2.83 0.314 18.0, 38.0 -0.51
B6.A-ChrX m 34.6 11.2   8 3.96 0.324 19.0, 49.0 1.35
C57BL/6J f 26.5 3.38   8 1.2 0.128 21.0, 31.0 -0.35
C57BL/6J m 20.9 8.48   8 3.0 0.406 13.0, 36.0 -1.04


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
A/J f 26.375 3.1505 32.5744 20.1756
A/J m 24.375 3.1505 30.5744 18.1756
B6.A-Chr1 f 31.0 3.1505 37.1994 24.8006
B6.A-Chr1 m 30.5 3.1505 36.6994 24.3006
B6.A-Chr10 f 17.0 3.1505 23.1994 10.8006
B6.A-Chr10 m 24.125 3.1505 30.3244 17.9256
B6.A-Chr11 f 30.375 3.1505 36.5744 24.1756
B6.A-Chr11 m 25.625 3.1505 31.8244 19.4256
B6.A-Chr12 f 24.5714 3.368 31.1989 17.944
B6.A-Chr12 m 15.25 3.1505 21.4494 9.0506
B6.A-Chr13 f 28.625 3.1505 34.8244 22.4256
B6.A-Chr13 m 22.75 3.1505 28.9494 16.5506
B6.A-Chr14 f 29.875 3.1505 36.0744 23.6756
B6.A-Chr14 m 25.375 3.1505 31.5744 19.1756
B6.A-Chr15 f 21.375 3.1505 27.5744 15.1756
B6.A-Chr15 m 22.875 3.1505 29.0744 16.6756
B6.A-Chr16 f 34.0 3.1505 40.1994 27.8006
B6.A-Chr16 m 25.875 3.1505 32.0744 19.6756
B6.A-Chr17 f 36.25 3.1505 42.4494 30.0506
B6.A-Chr17 m 29.375 3.1505 35.5744 23.1756
B6.A-Chr18 f 39.875 3.1505 46.0744 33.6756
B6.A-Chr18 m 32.125 3.1505 38.3244 25.9256
B6.A-Chr19 f 32.0 3.1505 38.1994 25.8006
B6.A-Chr19 m 29.5 3.1505 35.6994 23.3006
B6.A-Chr2 f 36.375 3.1505 42.5744 30.1756
B6.A-Chr2 m 36.125 3.1505 42.3244 29.9256
B6.A-Chr3 f 28.875 3.1505 35.0744 22.6756
B6.A-Chr3 m 24.625 3.1505 30.8244 18.4256
B6.A-Chr4 f 26.875 3.1505 33.0744 20.6756
B6.A-Chr4 m 25.125 3.1505 31.3244 18.9256
B6.A-Chr5 f 34.375 3.1505 40.5744 28.1756
B6.A-Chr5 m 32.875 3.1505 39.0744 26.6756
B6.A-Chr6 f 25.375 3.1505 31.5744 19.1756
B6.A-Chr6 m 23.125 3.1505 29.3244 16.9256
B6.A-Chr7 f 37.75 3.1505 43.9494 31.5506
B6.A-Chr7 m 37.625 3.1505 43.8244 31.4256
B6.A-Chr8 f 21.0 3.1505 27.1994 14.8006
B6.A-Chr8 m 30.5 3.1505 36.6994 24.3006
B6.A-Chr9 f 17.1429 3.368 23.7703 10.5154
B6.A-Chr9 m 18.0 3.1505 24.1994 11.8006
B6.A-ChrX f 25.5 3.1505 31.6994 19.3006
B6.A-ChrX m 34.625 3.1505 40.8244 28.4256
C57BL/6J f 26.5 3.1505 32.6994 20.3006
C57BL/6J m 20.875 3.1505 27.0744 14.6756


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
A/J both 25.375 2.2277 29.7586 20.9914
B6.A-Chr1 both 30.75 2.2277 35.1336 26.3664
B6.A-Chr10 both 20.5625 2.2277 24.9461 16.1789
B6.A-Chr11 both 28.0 2.2277 32.3836 23.6164
B6.A-Chr12 both 19.9107 2.3059 24.4482 15.3732
B6.A-Chr13 both 25.6875 2.2277 30.0711 21.3039
B6.A-Chr14 both 27.625 2.2277 32.0086 23.2414
B6.A-Chr15 both 22.125 2.2277 26.5086 17.7414
B6.A-Chr16 both 29.9375 2.2277 34.3211 25.5539
B6.A-Chr17 both 32.8125 2.2277 37.1961 28.4289
B6.A-Chr18 both 36.0 2.2277 40.3836 31.6164
B6.A-Chr19 both 30.75 2.2277 35.1336 26.3664
B6.A-Chr2 both 36.25 2.2277 40.6336 31.8664
B6.A-Chr3 both 26.75 2.2277 31.1336 22.3664
B6.A-Chr4 both 26.0 2.2277 30.3836 21.6164
B6.A-Chr5 both 33.625 2.2277 38.0086 29.2414
B6.A-Chr6 both 24.25 2.2277 28.6336 19.8664
B6.A-Chr7 both 37.6875 2.2277 42.0711 33.3039
B6.A-Chr8 both 25.75 2.2277 30.1336 21.3664
B6.A-Chr9 both 17.5714 2.3059 22.1089 13.0339
B6.A-ChrX both 30.0625 2.2277 34.4461 25.6789
C57BL/6J both 23.6875 2.2277 28.0711 19.3039




GWAS analysis not available: Strain panel must be either Inbred, HMDP, BXD, BXH, CXB, or AXB/BXA