Project measure / variable:   Donahue3   episodes_rearing

ID, description, units MPD:37713   episodes_rearing   number of discrete rearing episodes, 10 min test   [n]  
Data set, strains Donahue3   B6.A consomic w/par   22 strains     sex: both     age: 6-7wks
Procedure open field test
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  STRAIN COMPARISON PLOT
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Donahue3 - number of discrete rearing episodes, 10 min test



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested22 strains22 strains
Mean of the strain means45.2   n 55.6   n
Median of the strain means48.1   n 58.6   n
SD of the strain means± 13.3 ± 17.3
Coefficient of variation (CV)0.294 0.311
Min–max range of strain means2.38   –   64.8   n 1.88   –   79.6   n
Mean sample size per strain8.0   mice 8.0   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 9660.0455 9660.0455 42.3383 < 0.0001
strain 21 71481.9659 3403.9031 14.9187 < 0.0001
sex:strain 21 8364.8295 398.3252 1.7458 0.0237
Residuals 308 70274.25 228.1631


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
A/J f 2.38 3.11   8 1.1 1.31 -3.22
A/J m 1.88 2.23   8 0.789 1.19 -3.11
B6.A-Chr1 f 24.1 7.94   8 2.81 0.329 13.0, 35.0 -1.59
B6.A-Chr1 m 48.8 15.4   8 5.45 0.316 33.0, 77.0 -0.4
B6.A-Chr10 f 39.5 22.7   8 8.04 0.576 14.0, 75.0 -0.43
B6.A-Chr10 m 63.0 13.6   8 4.81 0.216 38.0, 82.0 0.43
B6.A-Chr11 f 51.0 16.4   8 5.79 0.321 26.0, 85.0 0.44
B6.A-Chr11 m 55.2 13.1   8 4.62 0.237 31.0, 68.0 -0.03
B6.A-Chr12 f 29.4 12.5   8 4.44 0.427 12.0, 47.0 -1.19
B6.A-Chr12 m 39.0 15.1   8 5.35 0.388 20.0, 68.0 -0.96
B6.A-Chr13 f 53.6 12.0   8 4.25 0.224 29.0, 69.0 0.63
B6.A-Chr13 m 71.2 16.8   8 5.94 0.236 49.0, 96.0 0.9
B6.A-Chr14 f 50.8 16.3   8 5.76 0.321 33.0, 74.0 0.42
B6.A-Chr14 m 65.5 14.6   8 5.14 0.222 44.0, 89.0 0.57
B6.A-Chr15 f 48.6 16.1   8 5.7 0.332 24.0, 80.0 0.26
B6.A-Chr15 m 42.9 13.2   8 4.67 0.308 23.0, 66.0 -0.74
B6.A-Chr16 f 41.1 10.9   8 3.87 0.266 25.0, 62.0 -0.31
B6.A-Chr16 m 54.5 14.6   8 5.16 0.268 38.0, 78.0 -0.07
B6.A-Chr17 f 54.6 9.8   8 3.46 0.179 44.0, 75.0 0.71
B6.A-Chr17 m 49.2 11.4   8 4.03 0.232 37.0, 69.0 -0.37
B6.A-Chr18 f 46.5 16.0   8 5.65 0.344 26.0, 81.0 0.1
B6.A-Chr18 m 61.9 13.2   8 4.67 0.213 43.0, 78.0 0.36
B6.A-Chr19 f 56.0 8.12   8 2.87 0.145 47.0, 68.0 0.82
B6.A-Chr19 m 78.6 13.0   8 4.59 0.165 59.0, 98.0 1.33
B6.A-Chr2 f 49.1 7.12   8 2.52 0.145 39.0, 60.0 0.3
B6.A-Chr2 m 57.4 12.8   8 4.54 0.224 38.0, 73.0 0.1
B6.A-Chr3 f 57.5 14.9   8 5.27 0.259 36.0, 79.0 0.93
B6.A-Chr3 m 65.6 18.1   8 6.38 0.275 40.0, 89.0 0.58
B6.A-Chr4 f 39.8 8.97   8 3.17 0.226 27.0, 50.0 -0.4
B6.A-Chr4 m 59.9 24.1   8 8.51 0.402 8.0, 82.0 0.25
B6.A-Chr5 f 56.9 11.1   8 3.91 0.194 41.0, 73.0 0.88
B6.A-Chr5 m 78.6 25.2   8 8.91 0.321 53.0, 120.0 1.33
B6.A-Chr6 f 39.9 13.2   8 4.68 0.332 15.0, 56.0 -0.4
B6.A-Chr6 m 34.0 23.7   8 8.36 0.696 6.0, 81.0 -1.25
B6.A-Chr7 f 47.6 24.4   8 8.64 0.513 20.0, 81.0 0.18
B6.A-Chr7 m 49.5 17.8   8 6.3 0.36 22.0, 78.0 -0.36
B6.A-Chr8 f 48.8 10.8   8 3.8 0.221 32.0, 63.0 0.27
B6.A-Chr8 m 61.0 13.9   8 4.91 0.228 42.0, 88.0 0.31
B6.A-Chr9 f 47.5 12.4   8 4.4 0.262 32.0, 68.0 0.18
B6.A-Chr9 m 45.4 18.7   8 6.62 0.413 20.0, 80.0 -0.59
B6.A-ChrX f 44.4 13.5   8 4.77 0.304 27.0, 67.0 -0.06
B6.A-ChrX m 61.5 17.1   8 6.05 0.278 32.0, 79.0 0.34
C57BL/6J f 64.8 12.4   8 4.39 0.192 44.0, 77.0 1.48
C57BL/6J m 79.6 19.0   8 6.73 0.239 54.0, 106.0 1.39


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
A/J f 2.375 5.3404 12.8834 0.0
A/J m 1.875 5.3404 12.3834 0.0
B6.A-Chr1 f 24.125 5.3404 34.6334 13.6166
B6.A-Chr1 m 48.75 5.3404 59.2584 38.2416
B6.A-Chr10 f 39.5 5.3404 50.0084 28.9916
B6.A-Chr10 m 63.0 5.3404 73.5084 52.4916
B6.A-Chr11 f 51.0 5.3404 61.5084 40.4916
B6.A-Chr11 m 55.25 5.3404 65.7584 44.7416
B6.A-Chr12 f 29.375 5.3404 39.8834 18.8666
B6.A-Chr12 m 39.0 5.3404 49.5084 28.4916
B6.A-Chr13 f 53.625 5.3404 64.1334 43.1166
B6.A-Chr13 m 71.25 5.3404 81.7584 60.7416
B6.A-Chr14 f 50.75 5.3404 61.2584 40.2416
B6.A-Chr14 m 65.5 5.3404 76.0084 54.9916
B6.A-Chr15 f 48.625 5.3404 59.1334 38.1166
B6.A-Chr15 m 42.875 5.3404 53.3834 32.3666
B6.A-Chr16 f 41.125 5.3404 51.6334 30.6166
B6.A-Chr16 m 54.5 5.3404 65.0084 43.9916
B6.A-Chr17 f 54.625 5.3404 65.1334 44.1166
B6.A-Chr17 m 49.25 5.3404 59.7584 38.7416
B6.A-Chr18 f 46.5 5.3404 57.0084 35.9916
B6.A-Chr18 m 61.875 5.3404 72.3834 51.3666
B6.A-Chr19 f 56.0 5.3404 66.5084 45.4916
B6.A-Chr19 m 78.625 5.3404 89.1334 68.1166
B6.A-Chr2 f 49.125 5.3404 59.6334 38.6166
B6.A-Chr2 m 57.375 5.3404 67.8834 46.8666
B6.A-Chr3 f 57.5 5.3404 68.0084 46.9916
B6.A-Chr3 m 65.625 5.3404 76.1334 55.1166
B6.A-Chr4 f 39.75 5.3404 50.2584 29.2416
B6.A-Chr4 m 59.875 5.3404 70.3834 49.3666
B6.A-Chr5 f 56.875 5.3404 67.3834 46.3666
B6.A-Chr5 m 78.625 5.3404 89.1334 68.1166
B6.A-Chr6 f 39.875 5.3404 50.3834 29.3666
B6.A-Chr6 m 34.0 5.3404 44.5084 23.4916
B6.A-Chr7 f 47.625 5.3404 58.1334 37.1166
B6.A-Chr7 m 49.5 5.3404 60.0084 38.9916
B6.A-Chr8 f 48.75 5.3404 59.2584 38.2416
B6.A-Chr8 m 61.0 5.3404 71.5084 50.4916
B6.A-Chr9 f 47.5 5.3404 58.0084 36.9916
B6.A-Chr9 m 45.375 5.3404 55.8834 34.8666
B6.A-ChrX f 44.375 5.3404 54.8834 33.8666
B6.A-ChrX m 61.5 5.3404 72.0084 50.9916
C57BL/6J f 64.75 5.3404 75.2584 54.2416
C57BL/6J m 79.625 5.3404 90.1334 69.1166


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
A/J both 2.125 3.7763 9.5555 0.0
B6.A-Chr1 both 36.4375 3.7763 43.868 29.007
B6.A-Chr10 both 51.25 3.7763 58.6805 43.8195
B6.A-Chr11 both 53.125 3.7763 60.5555 45.6945
B6.A-Chr12 both 34.1875 3.7763 41.618 26.757
B6.A-Chr13 both 62.4375 3.7763 69.868 55.007
B6.A-Chr14 both 58.125 3.7763 65.5555 50.6945
B6.A-Chr15 both 45.75 3.7763 53.1805 38.3195
B6.A-Chr16 both 47.8125 3.7763 55.243 40.382
B6.A-Chr17 both 51.9375 3.7763 59.368 44.507
B6.A-Chr18 both 54.1875 3.7763 61.618 46.757
B6.A-Chr19 both 67.3125 3.7763 74.743 59.882
B6.A-Chr2 both 53.25 3.7763 60.6805 45.8195
B6.A-Chr3 both 61.5625 3.7763 68.993 54.132
B6.A-Chr4 both 49.8125 3.7763 57.243 42.382
B6.A-Chr5 both 67.75 3.7763 75.1805 60.3195
B6.A-Chr6 both 36.9375 3.7763 44.368 29.507
B6.A-Chr7 both 48.5625 3.7763 55.993 41.132
B6.A-Chr8 both 54.875 3.7763 62.3055 47.4445
B6.A-Chr9 both 46.4375 3.7763 53.868 39.007
B6.A-ChrX both 52.9375 3.7763 60.368 45.507
C57BL/6J both 72.1875 3.7763 79.618 64.757




GWAS analysis not available: Strain panel must be either Inbred, HMDP, BXD, BXH, CXB, or AXB/BXA