Project measure / variable:   Donahue3   episodes_stereotypic

ID, description, units MPD:37710   episodes_stereotypic   number of discrete stereotypic episodes, repetitive activity, 10 min test   [n]  
Data set, strains Donahue3   B6.A consomic w/par   22 strains     sex: both     age: 6-7wks
Procedure open field test
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  STRAIN COMPARISON PLOT
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Donahue3 - number of discrete stereotypic episodes, repetitive activity, 10 min test



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested22 strains22 strains
Mean of the strain means98.2   n 100   n
Median of the strain means101   n 103   n
SD of the strain means± 11.4 ± 11.2
Coefficient of variation (CV)0.116 0.111
Min–max range of strain means49.2   –   106   n 52.6   –   107   n
Mean sample size per strain8.0   mice 8.0   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 296.3892 296.3892 4.1533 0.0424
strain 21 41966.6165 1998.4103 28.0037 < 0.0001
sex:strain 21 821.5483 39.1213 0.5482 0.9486
Residuals 308 21979.625 71.3624


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
A/J f 49.2 15.5   8 5.46 0.314 24.0, 75.0 -4.29
A/J m 52.6 12.3   8 4.36 0.234 37.0, 78.0 -4.26
B6.A-Chr1 f 98.9 9.28   8 3.28 0.0939 83.0, 112.0 0.06
B6.A-Chr1 m 94.1 11.3   8 4.01 0.121 82.0, 111.0 -0.54
B6.A-Chr10 f 96.0 7.58   8 2.68 0.0789 84.0, 108.0 -0.19
B6.A-Chr10 m 101.0 7.13   8 2.52 0.0707 92.0, 110.0 0.08
B6.A-Chr11 f 101.0 9.76   8 3.45 0.0968 85.0, 115.0 0.25
B6.A-Chr11 m 102.0 9.15   8 3.23 0.09 90.0, 118.0 0.17
B6.A-Chr12 f 97.6 6.7   8 2.37 0.0686 86.0, 106.0 -0.05
B6.A-Chr12 m 106.0 3.12   8 1.1 0.0295 100.0, 109.0 0.52
B6.A-Chr13 f 106.0 5.94   8 2.1 0.0561 96.0, 113.0 0.68
B6.A-Chr13 m 105.0 5.9   8 2.09 0.056 95.0, 116.0 0.43
B6.A-Chr14 f 104.0 10.1   8 3.57 0.0968 85.0, 115.0 0.51
B6.A-Chr14 m 101.0 6.92   8 2.45 0.0684 92.0, 112.0 0.08
B6.A-Chr15 f 103.0 4.14   8 1.46 0.04 97.0, 109.0 0.42
B6.A-Chr15 m 105.0 4.17   8 1.48 0.0399 99.0, 112.0 0.43
B6.A-Chr16 f 102.0 4.4   8 1.56 0.0432 95.0, 108.0 0.33
B6.A-Chr16 m 104.0 6.93   8 2.45 0.0668 95.0, 115.0 0.34
B6.A-Chr17 f 103.0 13.5   8 4.78 0.131 74.0, 116.0 0.42
B6.A-Chr17 m 107.0 6.9   8 2.44 0.0647 96.0, 116.0 0.61
B6.A-Chr18 f 96.6 9.46   8 3.34 0.0979 83.0, 112.0 -0.14
B6.A-Chr18 m 102.0 5.65   8 2.0 0.0553 90.0, 108.0 0.17
B6.A-Chr19 f 101.0 8.76   8 3.1 0.0868 88.0, 112.0 0.25
B6.A-Chr19 m 103.0 5.98   8 2.11 0.058 96.0, 113.0 0.26
B6.A-Chr2 f 94.4 12.8   8 4.53 0.136 76.0, 111.0 -0.33
B6.A-Chr2 m 93.1 11.3   8 3.98 0.121 81.0, 110.0 -0.63
B6.A-Chr3 f 96.8 12.8   8 4.52 0.132 71.0, 114.0 -0.12
B6.A-Chr3 m 98.5 13.3   8 4.71 0.135 68.0, 110.0 -0.15
B6.A-Chr4 f 96.6 10.3   8 3.63 0.106 80.0, 109.0 -0.14
B6.A-Chr4 m 102.0 6.84   8 2.42 0.0672 93.0, 113.0 0.17
B6.A-Chr5 f 105.0 11.2   8 3.98 0.107 85.0, 119.0 0.6
B6.A-Chr5 m 106.0 6.7   8 2.37 0.0634 100.0, 119.0 0.52
B6.A-Chr6 f 98.1 10.6   8 3.73 0.108 86.0, 117.0 -0.01
B6.A-Chr6 m 104.0 4.93   8 1.74 0.0472 94.0, 110.0 0.34
B6.A-Chr7 f 103.0 6.53   8 2.31 0.0634 94.0, 111.0 0.42
B6.A-Chr7 m 103.0 6.63   8 2.34 0.0645 91.0, 113.0 0.26
B6.A-Chr8 f 98.8 4.27   8 1.51 0.0432 93.0, 105.0 0.05
B6.A-Chr8 m 103.0 3.49   8 1.24 0.034 99.0, 109.0 0.26
B6.A-Chr9 f 104.0 5.13   8 1.81 0.0491 96.0, 110.0 0.51
B6.A-Chr9 m 104.0 8.58   8 3.04 0.0828 91.0, 118.0 0.34
B6.A-ChrX f 101.0 5.65   8 2.0 0.0561 90.0, 107.0 0.25
B6.A-ChrX m 103.0 4.06   8 1.44 0.0393 100.0, 111.0 0.26
C57BL/6J f 104.0 5.5   8 1.94 0.0527 95.0, 112.0 0.51
C57BL/6J m 104.0 4.39   8 1.55 0.0423 100.0, 113.0 0.34


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
A/J f 49.25 2.9867 55.1269 43.3731
A/J m 52.625 2.9867 58.5019 46.7481
B6.A-Chr1 f 98.875 2.9867 104.7519 92.9981
B6.A-Chr1 m 94.125 2.9867 100.0019 88.2481
B6.A-Chr10 f 96.0 2.9867 101.8769 90.1231
B6.A-Chr10 m 100.75 2.9867 106.6269 94.8731
B6.A-Chr11 f 100.875 2.9867 106.7519 94.9981
B6.A-Chr11 m 101.625 2.9867 107.5019 95.7481
B6.A-Chr12 f 97.625 2.9867 103.5019 91.7481
B6.A-Chr12 m 105.5 2.9867 111.3769 99.6231
B6.A-Chr13 f 105.875 2.9867 111.7519 99.9981
B6.A-Chr13 m 105.375 2.9867 111.2519 99.4981
B6.A-Chr14 f 104.25 2.9867 110.1269 98.3731
B6.A-Chr14 m 101.25 2.9867 107.1269 95.3731
B6.A-Chr15 f 103.375 2.9867 109.2519 97.4981
B6.A-Chr15 m 104.625 2.9867 110.5019 98.7481
B6.A-Chr16 f 101.75 2.9867 107.6269 95.8731
B6.A-Chr16 m 103.625 2.9867 109.5019 97.7481
B6.A-Chr17 f 102.875 2.9867 108.7519 96.9981
B6.A-Chr17 m 106.75 2.9867 112.6269 100.8731
B6.A-Chr18 f 96.625 2.9867 102.5019 90.7481
B6.A-Chr18 m 102.25 2.9867 108.1269 96.3731
B6.A-Chr19 f 100.875 2.9867 106.7519 94.9981
B6.A-Chr19 m 103.0 2.9867 108.8769 97.1231
B6.A-Chr2 f 94.375 2.9867 100.2519 88.4981
B6.A-Chr2 m 93.125 2.9867 99.0019 87.2481
B6.A-Chr3 f 96.75 2.9867 102.6269 90.8731
B6.A-Chr3 m 98.5 2.9867 104.3769 92.6231
B6.A-Chr4 f 96.625 2.9867 102.5019 90.7481
B6.A-Chr4 m 101.75 2.9867 107.6269 95.8731
B6.A-Chr5 f 105.375 2.9867 111.2519 99.4981
B6.A-Chr5 m 105.625 2.9867 111.5019 99.7481
B6.A-Chr6 f 98.125 2.9867 104.0019 92.2481
B6.A-Chr6 m 104.5 2.9867 110.3769 98.6231
B6.A-Chr7 f 103.125 2.9867 109.0019 97.2481
B6.A-Chr7 m 102.75 2.9867 108.6269 96.8731
B6.A-Chr8 f 98.75 2.9867 104.6269 92.8731
B6.A-Chr8 m 102.75 2.9867 108.6269 96.8731
B6.A-Chr9 f 104.5 2.9867 110.3769 98.6231
B6.A-Chr9 m 103.625 2.9867 109.5019 97.7481
B6.A-ChrX f 100.75 2.9867 106.6269 94.8731
B6.A-ChrX m 103.25 2.9867 109.1269 97.3731
C57BL/6J f 104.25 2.9867 110.1269 98.3731
C57BL/6J m 103.875 2.9867 109.7519 97.9981


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
A/J both 50.9375 2.1119 55.0931 46.7819
B6.A-Chr1 both 96.5 2.1119 100.6556 92.3444
B6.A-Chr10 both 98.375 2.1119 102.5306 94.2194
B6.A-Chr11 both 101.25 2.1119 105.4056 97.0944
B6.A-Chr12 both 101.5625 2.1119 105.7181 97.4069
B6.A-Chr13 both 105.625 2.1119 109.7806 101.4694
B6.A-Chr14 both 102.75 2.1119 106.9056 98.5944
B6.A-Chr15 both 104.0 2.1119 108.1556 99.8444
B6.A-Chr16 both 102.6875 2.1119 106.8431 98.5319
B6.A-Chr17 both 104.8125 2.1119 108.9681 100.6569
B6.A-Chr18 both 99.4375 2.1119 103.5931 95.2819
B6.A-Chr19 both 101.9375 2.1119 106.0931 97.7819
B6.A-Chr2 both 93.75 2.1119 97.9056 89.5944
B6.A-Chr3 both 97.625 2.1119 101.7806 93.4694
B6.A-Chr4 both 99.1875 2.1119 103.3431 95.0319
B6.A-Chr5 both 105.5 2.1119 109.6556 101.3444
B6.A-Chr6 both 101.3125 2.1119 105.4681 97.1569
B6.A-Chr7 both 102.9375 2.1119 107.0931 98.7819
B6.A-Chr8 both 100.75 2.1119 104.9056 96.5944
B6.A-Chr9 both 104.0625 2.1119 108.2181 99.9069
B6.A-ChrX both 102.0 2.1119 106.1556 97.8444
C57BL/6J both 104.0625 2.1119 108.2181 99.9069




GWAS analysis not available: Strain panel must be either Inbred, HMDP, BXD, BXH, CXB, or AXB/BXA