Project measure / variable:   Donahue3   breaks_stereotypic

ID, description, units MPD:37709   breaks_stereotypic   number of stereotypic beam breaks, repetitive activity, 10 min test   [n]  
Data set, strains Donahue3   B6.A consomic w/par   22 strains     sex: both     age: 6-7wks
Procedure open field test
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  STRAIN COMPARISON PLOT
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Donahue3 - number of stereotypic beam breaks, repetitive activity, 10 min test



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested22 strains22 strains
Mean of the strain means1550   n 1656   n
Median of the strain means1646   n 1762   n
SD of the strain means± 342 ± 346
Coefficient of variation (CV)0.221 0.209
Min–max range of strain means326   –   1878   n 366   –   2057   n
Mean sample size per strain8.0   mice 8.0   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 987814.2301 987814.2301 9.6577 0.0021
strain 21 38440619.5824 1830505.6944 17.8966 < 0.0001
sex:strain 21 1386053.8324 66002.5634 0.6453 0.8835
Residuals 308 31503029.375 102282.5629


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
A/J f 326.0 136.0   8 48.2 0.418 189.0, 613.0 -3.58
A/J m 366.0 191.0   8 67.4 0.521 161.0, 789.0 -3.72
B6.A-Chr1 f 1269.0 350.0   8 124.0 0.276 701.0, 1716.0 -0.82
B6.A-Chr1 m 1402.0 330.0   8 117.0 0.236 1062.0, 1962.0 -0.73
B6.A-Chr10 f 1342.0 257.0   8 90.9 0.192 1043.0, 1821.0 -0.61
B6.A-Chr10 m 1448.0 191.0   8 67.4 0.132 1252.0, 1793.0 -0.6
B6.A-Chr11 f 1723.0 455.0   8 161.0 0.264 1174.0, 2456.0 0.5
B6.A-Chr11 m 1614.0 285.0   8 101.0 0.177 1255.0, 1931.0 -0.12
B6.A-Chr12 f 1319.0 313.0   8 111.0 0.238 1030.0, 1907.0 -0.68
B6.A-Chr12 m 1710.0 298.0   8 105.0 0.174 1241.0, 2195.0 0.16
B6.A-Chr13 f 1607.0 285.0   8 101.0 0.178 1061.0, 1866.0 0.17
B6.A-Chr13 m 1834.0 306.0   8 108.0 0.167 1427.0, 2254.0 0.51
B6.A-Chr14 f 1723.0 302.0   8 107.0 0.175 1090.0, 2012.0 0.5
B6.A-Chr14 m 1749.0 469.0   8 166.0 0.268 1190.0, 2489.0 0.27
B6.A-Chr15 f 1867.0 289.0   8 102.0 0.155 1425.0, 2229.0 0.93
B6.A-Chr15 m 1783.0 183.0   8 64.6 0.102 1557.0, 2051.0 0.37
B6.A-Chr16 f 1769.0 304.0   8 107.0 0.172 1202.0, 2166.0 0.64
B6.A-Chr16 m 1775.0 332.0   8 118.0 0.187 1408.0, 2285.0 0.34
B6.A-Chr17 f 1820.0 482.0   8 171.0 0.265 866.0, 2511.0 0.79
B6.A-Chr17 m 1836.0 288.0   8 102.0 0.157 1364.0, 2363.0 0.52
B6.A-Chr18 f 1361.0 208.0   8 73.7 0.153 1069.0, 1793.0 -0.55
B6.A-Chr18 m 1465.0 238.0   8 84.1 0.162 1162.0, 1823.0 -0.55
B6.A-Chr19 f 1795.0 489.0   8 173.0 0.273 1318.0, 2820.0 0.71
B6.A-Chr19 m 2025.0 304.0   8 107.0 0.15 1687.0, 2456.0 1.07
B6.A-Chr2 f 1319.0 240.0   8 85.0 0.182 998.0, 1685.0 -0.68
B6.A-Chr2 m 1475.0 300.0   8 106.0 0.203 1069.0, 1851.0 -0.52
B6.A-Chr3 f 1467.0 352.0   8 125.0 0.24 945.0, 2107.0 -0.24
B6.A-Chr3 m 1682.0 397.0   8 140.0 0.236 936.0, 2252.0 0.07
B6.A-Chr4 f 1494.0 498.0   8 176.0 0.334 1080.0, 2552.0 -0.16
B6.A-Chr4 m 1433.0 189.0   8 66.9 0.132 1084.0, 1686.0 -0.64
B6.A-Chr5 f 1878.0 292.0   8 103.0 0.155 1361.0, 2376.0 0.96
B6.A-Chr5 m 2057.0 348.0   8 123.0 0.169 1752.0, 2828.0 1.16
B6.A-Chr6 f 1438.0 328.0   8 116.0 0.228 1112.0, 1992.0 -0.33
B6.A-Chr6 m 1524.0 136.0   8 47.9 0.089 1345.0, 1736.0 -0.38
B6.A-Chr7 f 1852.0 321.0   8 113.0 0.173 1343.0, 2321.0 0.88
B6.A-Chr7 m 1956.0 401.0   8 142.0 0.205 1254.0, 2464.0 0.87
B6.A-Chr8 f 1485.0 253.0   8 89.4 0.17 1174.0, 1863.0 -0.19
B6.A-Chr8 m 1846.0 333.0   8 118.0 0.18 1418.0, 2521.0 0.55
B6.A-Chr9 f 1771.0 301.0   8 107.0 0.17 1242.0, 2166.0 0.64
B6.A-Chr9 m 1802.0 316.0   8 112.0 0.176 1289.0, 2252.0 0.42
B6.A-ChrX f 1684.0 263.0   8 92.9 0.156 1427.0, 2124.0 0.39
B6.A-ChrX m 1818.0 340.0   8 120.0 0.187 1418.0, 2516.0 0.47
C57BL/6J f 1798.0 351.0   8 124.0 0.195 1339.0, 2360.0 0.72
C57BL/6J m 1834.0 316.0   8 112.0 0.172 1434.0, 2260.0 0.51


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
A/J f 326.375 113.0722 548.8667 103.8833
A/J m 366.125 113.0722 588.6167 143.6333
B6.A-Chr1 f 1268.625 113.0722 1491.1167 1046.1333
B6.A-Chr1 m 1401.5 113.0722 1623.9917 1179.0083
B6.A-Chr10 f 1342.375 113.0722 1564.8667 1119.8833
B6.A-Chr10 m 1448.25 113.0722 1670.7417 1225.7583
B6.A-Chr11 f 1722.625 113.0722 1945.1167 1500.1333
B6.A-Chr11 m 1614.375 113.0722 1836.8667 1391.8833
B6.A-Chr12 f 1318.625 113.0722 1541.1167 1096.1333
B6.A-Chr12 m 1709.625 113.0722 1932.1167 1487.1333
B6.A-Chr13 f 1606.875 113.0722 1829.3667 1384.3833
B6.A-Chr13 m 1834.25 113.0722 2056.7417 1611.7583
B6.A-Chr14 f 1722.75 113.0722 1945.2417 1500.2583
B6.A-Chr14 m 1749.375 113.0722 1971.8667 1526.8833
B6.A-Chr15 f 1866.625 113.0722 2089.1167 1644.1333
B6.A-Chr15 m 1782.75 113.0722 2005.2417 1560.2583
B6.A-Chr16 f 1768.75 113.0722 1991.2417 1546.2583
B6.A-Chr16 m 1774.875 113.0722 1997.3667 1552.3833
B6.A-Chr17 f 1820.0 113.0722 2042.4917 1597.5083
B6.A-Chr17 m 1836.5 113.0722 2058.9917 1614.0083
B6.A-Chr18 f 1361.375 113.0722 1583.8667 1138.8833
B6.A-Chr18 m 1464.875 113.0722 1687.3667 1242.3833
B6.A-Chr19 f 1795.0 113.0722 2017.4917 1572.5083
B6.A-Chr19 m 2025.25 113.0722 2247.7417 1802.7583
B6.A-Chr2 f 1318.625 113.0722 1541.1167 1096.1333
B6.A-Chr2 m 1475.25 113.0722 1697.7417 1252.7583
B6.A-Chr3 f 1467.125 113.0722 1689.6167 1244.6333
B6.A-Chr3 m 1682.0 113.0722 1904.4917 1459.5083
B6.A-Chr4 f 1493.5 113.0722 1715.9917 1271.0083
B6.A-Chr4 m 1433.25 113.0722 1655.7417 1210.7583
B6.A-Chr5 f 1878.25 113.0722 2100.7417 1655.7583
B6.A-Chr5 m 2057.0 113.0722 2279.4917 1834.5083
B6.A-Chr6 f 1437.625 113.0722 1660.1167 1215.1333
B6.A-Chr6 m 1524.0 113.0722 1746.4917 1301.5083
B6.A-Chr7 f 1851.5 113.0722 2073.9917 1629.0083
B6.A-Chr7 m 1955.625 113.0722 2178.1167 1733.1333
B6.A-Chr8 f 1484.875 113.0722 1707.3667 1262.3833
B6.A-Chr8 m 1845.5 113.0722 2067.9917 1623.0083
B6.A-Chr9 f 1770.75 113.0722 1993.2417 1548.2583
B6.A-Chr9 m 1802.25 113.0722 2024.7417 1579.7583
B6.A-ChrX f 1684.125 113.0722 1906.6167 1461.6333
B6.A-ChrX m 1818.25 113.0722 2040.7417 1595.7583
C57BL/6J f 1797.5 113.0722 2019.9917 1575.0083
C57BL/6J m 1833.875 113.0722 2056.3667 1611.3833


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
A/J both 346.25 79.9541 503.5754 188.9246
B6.A-Chr1 both 1335.0625 79.9541 1492.3879 1177.7371
B6.A-Chr10 both 1395.3125 79.9541 1552.6379 1237.9871
B6.A-Chr11 both 1668.5 79.9541 1825.8254 1511.1746
B6.A-Chr12 both 1514.125 79.9541 1671.4504 1356.7996
B6.A-Chr13 both 1720.5625 79.9541 1877.8879 1563.2371
B6.A-Chr14 both 1736.0625 79.9541 1893.3879 1578.7371
B6.A-Chr15 both 1824.6875 79.9541 1982.0129 1667.3621
B6.A-Chr16 both 1771.8125 79.9541 1929.1379 1614.4871
B6.A-Chr17 both 1828.25 79.9541 1985.5754 1670.9246
B6.A-Chr18 both 1413.125 79.9541 1570.4504 1255.7996
B6.A-Chr19 both 1910.125 79.9541 2067.4504 1752.7996
B6.A-Chr2 both 1396.9375 79.9541 1554.2629 1239.6121
B6.A-Chr3 both 1574.5625 79.9541 1731.8879 1417.2371
B6.A-Chr4 both 1463.375 79.9541 1620.7004 1306.0496
B6.A-Chr5 both 1967.625 79.9541 2124.9504 1810.2996
B6.A-Chr6 both 1480.8125 79.9541 1638.1379 1323.4871
B6.A-Chr7 both 1903.5625 79.9541 2060.8879 1746.2371
B6.A-Chr8 both 1665.1875 79.9541 1822.5129 1507.8621
B6.A-Chr9 both 1786.5 79.9541 1943.8254 1629.1746
B6.A-ChrX both 1751.1875 79.9541 1908.5129 1593.8621
C57BL/6J both 1815.6875 79.9541 1973.0129 1658.3621




GWAS analysis not available: Strain panel must be either Inbred, HMDP, BXD, BXH, CXB, or AXB/BXA