Project measure / variable:   Donahue3   distance_center

ID, description, units MPD:37707   distance_center   distance traveled in center of arena, 10 min test   [cm]  
Data set, strains Donahue3   B6.A consomic w/par   22 strains     sex: both     age: 6-7wks
Procedure open field test
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  STRAIN COMPARISON PLOT
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Donahue3 - distance traveled in center of arena, 10 min test



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested22 strains22 strains
Mean of the strain means463   cm 542   cm
Median of the strain means477   cm 566   cm
SD of the strain means± 143 ± 153
Coefficient of variation (CV)0.308 0.283
Min–max range of strain means9.88   –   663   cm 25.6   –   742   cm
Mean sample size per strain8.0   mice 8.0   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 553720.2301 553720.2301 22.6072 < 0.0001
strain 21 6837594.0597 325599.7171 13.2935 < 0.0001
sex:strain 21 517998.8324 24666.6111 1.0071 0.4542
Residuals 308 7543876.375 24493.1051


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
A/J f 9.88 9.82   8 3.47 0.994 -3.17
A/J m 25.6 21.2   8 7.49 0.827 2.0, 67.0 -3.37
B6.A-Chr1 f 366.0 137.0   8 48.3 0.373 129.0, 491.0 -0.68
B6.A-Chr1 m 452.0 167.0   8 59.0 0.369 183.0, 742.0 -0.59
B6.A-Chr10 f 366.0 104.0   8 36.8 0.285 244.0, 543.0 -0.68
B6.A-Chr10 m 386.0 132.0   8 46.7 0.342 254.0, 664.0 -1.02
B6.A-Chr11 f 471.0 134.0   8 47.5 0.285 269.0, 653.0 0.06
B6.A-Chr11 m 480.0 76.7   8 27.1 0.16 340.0, 563.0 -0.4
B6.A-Chr12 f 336.0 117.0   8 41.3 0.347 133.0, 508.0 -0.89
B6.A-Chr12 m 527.0 167.0   8 58.9 0.316 273.0, 819.0 -0.1
B6.A-Chr13 f 363.0 100.0   8 35.5 0.277 190.0, 475.0 -0.7
B6.A-Chr13 m 604.0 246.0   8 86.8 0.407 361.0, 1113.0 0.41
B6.A-Chr14 f 541.0 173.0   8 61.2 0.32 291.0, 779.0 0.55
B6.A-Chr14 m 628.0 151.0   8 53.5 0.241 489.0, 901.0 0.56
B6.A-Chr15 f 549.0 145.0   8 51.3 0.264 307.0, 757.0 0.61
B6.A-Chr15 m 536.0 200.0   8 70.8 0.374 391.0, 1012.0 -0.04
B6.A-Chr16 f 487.0 161.0   8 56.8 0.33 277.0, 785.0 0.17
B6.A-Chr16 m 531.0 139.0   8 49.1 0.262 288.0, 715.0 -0.07
B6.A-Chr17 f 634.0 172.0   8 61.0 0.272 412.0, 936.0 1.2
B6.A-Chr17 m 709.0 130.0   8 45.9 0.183 519.0, 895.0 1.09
B6.A-Chr18 f 385.0 109.0   8 38.4 0.282 255.0, 584.0 -0.54
B6.A-Chr18 m 448.0 189.0   8 66.8 0.421 180.0, 750.0 -0.61
B6.A-Chr19 f 619.0 175.0   8 61.8 0.282 445.0, 964.0 1.1
B6.A-Chr19 m 647.0 235.0   8 83.1 0.363 278.0, 973.0 0.69
B6.A-Chr2 f 483.0 95.1   8 33.6 0.197 397.0, 701.0 0.14
B6.A-Chr2 m 597.0 158.0   8 55.7 0.264 422.0, 834.0 0.36
B6.A-Chr3 f 412.0 130.0   8 46.0 0.316 250.0, 659.0 -0.36
B6.A-Chr3 m 534.0 141.0   8 49.8 0.264 272.0, 753.0 -0.05
B6.A-Chr4 f 373.0 134.0   8 47.5 0.36 132.0, 539.0 -0.63
B6.A-Chr4 m 349.0 120.0   8 42.3 0.343 167.0, 527.0 -1.26
B6.A-Chr5 f 613.0 153.0   8 54.0 0.249 420.0, 901.0 1.05
B6.A-Chr5 m 742.0 320.0   8 113.0 0.431 400.0, 1384.0 1.31
B6.A-Chr6 f 466.0 142.0   8 50.1 0.304 262.0, 750.0 0.02
B6.A-Chr6 m 524.0 152.0   8 53.9 0.291 298.0, 741.0 -0.12
B6.A-Chr7 f 663.0 262.0   8 92.7 0.395 369.0, 1177.0 1.4
B6.A-Chr7 m 628.0 217.0   8 76.6 0.345 342.0, 938.0 0.56
B6.A-Chr8 f 492.0 143.0   8 50.5 0.291 245.0, 712.0 0.21
B6.A-Chr8 m 654.0 136.0   8 48.0 0.207 398.0, 876.0 0.73
B6.A-Chr9 f 619.0 153.0   8 54.2 0.248 335.0, 828.0 1.1
B6.A-Chr9 m 625.0 124.0   8 43.9 0.199 477.0, 815.0 0.54
B6.A-ChrX f 418.0 81.5   8 28.8 0.195 300.0, 583.0 -0.31
B6.A-ChrX m 636.0 88.5   8 31.3 0.139 483.0, 785.0 0.61
C57BL/6J f 513.0 167.0   8 59.2 0.326 355.0, 889.0 0.35
C57BL/6J m 659.0 140.0   8 49.6 0.213 531.0, 934.0 0.76


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
A/J f 9.875 55.3321 118.7517 0.0
A/J m 25.625 55.3321 134.5017 0.0
B6.A-Chr1 f 366.125 55.3321 475.0017 257.2483
B6.A-Chr1 m 452.5 55.3321 561.3767 343.6233
B6.A-Chr10 f 365.5 55.3321 474.3767 256.6233
B6.A-Chr10 m 385.75 55.3321 494.6267 276.8733
B6.A-Chr11 f 470.875 55.3321 579.7517 361.9983
B6.A-Chr11 m 480.375 55.3321 589.2517 371.4983
B6.A-Chr12 f 336.375 55.3321 445.2517 227.4983
B6.A-Chr12 m 527.375 55.3321 636.2517 418.4983
B6.A-Chr13 f 363.125 55.3321 472.0017 254.2483
B6.A-Chr13 m 603.5 55.3321 712.3767 494.6233
B6.A-Chr14 f 540.625 55.3321 649.5017 431.7483
B6.A-Chr14 m 627.75 55.3321 736.6267 518.8733
B6.A-Chr15 f 549.125 55.3321 658.0017 440.2483
B6.A-Chr15 m 536.25 55.3321 645.1267 427.3733
B6.A-Chr16 f 487.25 55.3321 596.1267 378.3733
B6.A-Chr16 m 531.125 55.3321 640.0017 422.2483
B6.A-Chr17 f 634.5 55.3321 743.3767 525.6233
B6.A-Chr17 m 709.25 55.3321 818.1267 600.3733
B6.A-Chr18 f 385.0 55.3321 493.8767 276.1233
B6.A-Chr18 m 448.375 55.3321 557.2517 339.4983
B6.A-Chr19 f 618.875 55.3321 727.7517 509.9983
B6.A-Chr19 m 646.75 55.3321 755.6267 537.8733
B6.A-Chr2 f 482.75 55.3321 591.6267 373.8733
B6.A-Chr2 m 596.875 55.3321 705.7517 487.9983
B6.A-Chr3 f 411.75 55.3321 520.6267 302.8733
B6.A-Chr3 m 533.875 55.3321 642.7517 424.9983
B6.A-Chr4 f 372.875 55.3321 481.7517 263.9983
B6.A-Chr4 m 348.875 55.3321 457.7517 239.9983
B6.A-Chr5 f 612.625 55.3321 721.5017 503.7483
B6.A-Chr5 m 741.875 55.3321 850.7517 632.9983
B6.A-Chr6 f 465.5 55.3321 574.3767 356.6233
B6.A-Chr6 m 523.875 55.3321 632.7517 414.9983
B6.A-Chr7 f 663.25 55.3321 772.1267 554.3733
B6.A-Chr7 m 627.875 55.3321 736.7517 518.9983
B6.A-Chr8 f 491.5 55.3321 600.3767 382.6233
B6.A-Chr8 m 654.5 55.3321 763.3767 545.6233
B6.A-Chr9 f 618.75 55.3321 727.6267 509.8733
B6.A-Chr9 m 624.625 55.3321 733.5017 515.7483
B6.A-ChrX f 417.875 55.3321 526.7517 308.9983
B6.A-ChrX m 635.625 55.3321 744.5017 526.7483
C57BL/6J f 512.75 55.3321 621.6267 403.8733
C57BL/6J m 659.375 55.3321 768.2517 550.4983


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
A/J both 17.75 39.1257 94.7375 0.0
B6.A-Chr1 both 409.3125 39.1257 486.3 332.325
B6.A-Chr10 both 375.625 39.1257 452.6125 298.6375
B6.A-Chr11 both 475.625 39.1257 552.6125 398.6375
B6.A-Chr12 both 431.875 39.1257 508.8625 354.8875
B6.A-Chr13 both 483.3125 39.1257 560.3 406.325
B6.A-Chr14 both 584.1875 39.1257 661.175 507.2
B6.A-Chr15 both 542.6875 39.1257 619.675 465.7
B6.A-Chr16 both 509.1875 39.1257 586.175 432.2
B6.A-Chr17 both 671.875 39.1257 748.8625 594.8875
B6.A-Chr18 both 416.6875 39.1257 493.675 339.7
B6.A-Chr19 both 632.8125 39.1257 709.8 555.825
B6.A-Chr2 both 539.8125 39.1257 616.8 462.825
B6.A-Chr3 both 472.8125 39.1257 549.8 395.825
B6.A-Chr4 both 360.875 39.1257 437.8625 283.8875
B6.A-Chr5 both 677.25 39.1257 754.2375 600.2625
B6.A-Chr6 both 494.6875 39.1257 571.675 417.7
B6.A-Chr7 both 645.5625 39.1257 722.55 568.575
B6.A-Chr8 both 573.0 39.1257 649.9875 496.0125
B6.A-Chr9 both 621.6875 39.1257 698.675 544.7
B6.A-ChrX both 526.75 39.1257 603.7375 449.7625
C57BL/6J both 586.0625 39.1257 663.05 509.075




GWAS analysis not available: Strain panel must be either Inbred, HMDP, BXD, BXH, CXB, or AXB/BXA