Project measure / variable:   Donahue3   duration_vert

ID, description, units MPD:37706   duration_vert   duration of total vertical activity, 10 min test   [s]  
Data set, strains Donahue3   B6.A consomic w/par   22 strains     sex: both     age: 6-7wks
Procedure open field test
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  STRAIN COMPARISON PLOT
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Donahue3 - duration of total vertical activity, 10 min test



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested22 strains22 strains
Mean of the strain means43.3   s 50.7   s
Median of the strain means43.6   s 53.8   s
SD of the strain means± 14.0 ± 18.1
Coefficient of variation (CV)0.323 0.357
Min–max range of strain means1.92   –   66.2   s 0.613   –   75.7   s
Mean sample size per strain8.0   mice 8.0   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 4852.9801 4852.9801 20.0226 < 0.0001
strain 21 80239.8138 3820.9435 15.7646 < 0.0001
sex:strain 21 7435.6661 354.0793 1.4609 0.0893
Residuals 308 74651.4 242.3747


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
A/J f 1.92 3.61   8 1.28 1.88 -2.96
A/J m 0.613 0.794   8 0.281 1.3 -2.77
B6.A-Chr1 f 22.0 9.34   8 3.3 0.425 6.6, 35.8 -1.52
B6.A-Chr1 m 45.1 13.8   8 4.89 0.307 25.6, 67.2 -0.31
B6.A-Chr10 f 41.8 26.8   8 9.48 0.642 8.8, 83.0 -0.1
B6.A-Chr10 m 65.1 15.2   8 5.37 0.234 40.3, 83.7 0.8
B6.A-Chr11 f 45.8 16.5   8 5.82 0.359 21.2, 77.9 0.18
B6.A-Chr11 m 50.0 18.5   8 6.55 0.371 23.0, 72.0 -0.04
B6.A-Chr12 f 27.9 15.7   8 5.55 0.564 8.4, 56.1 -1.1
B6.A-Chr12 m 28.4 14.5   8 5.11 0.509 11.2, 57.7 -1.23
B6.A-Chr13 f 50.2 13.9   8 4.92 0.277 26.4, 72.4 0.5
B6.A-Chr13 m 70.2 14.3   8 5.06 0.204 52.8, 93.9 1.08
B6.A-Chr14 f 50.7 19.5   8 6.91 0.385 25.2, 78.5 0.53
B6.A-Chr14 m 57.3 10.8   8 3.82 0.189 36.9, 68.1 0.37
B6.A-Chr15 f 40.5 16.5   8 5.82 0.407 13.5, 68.6 -0.2
B6.A-Chr15 m 38.6 8.93   8 3.16 0.232 23.5, 52.8 -0.67
B6.A-Chr16 f 43.4 11.4   8 4.03 0.263 25.9, 58.3 0.01
B6.A-Chr16 m 54.5 15.2   8 5.38 0.279 36.6, 76.2 0.21
B6.A-Chr17 f 43.4 8.55   8 3.02 0.197 32.4, 56.3 0.01
B6.A-Chr17 m 36.6 11.3   8 4.0 0.309 24.9, 58.9 -0.78
B6.A-Chr18 f 43.8 15.6   8 5.52 0.357 24.8, 70.0 0.04
B6.A-Chr18 m 60.7 13.0   8 4.6 0.214 34.7, 72.7 0.55
B6.A-Chr19 f 57.8 10.7   8 3.8 0.186 40.5, 73.4 1.04
B6.A-Chr19 m 75.7 15.7   8 5.55 0.207 54.8, 100.0 1.39
B6.A-Chr2 f 46.6 9.17   8 3.24 0.197 28.3, 61.4 0.24
B6.A-Chr2 m 47.7 17.3   8 6.11 0.363 25.8, 70.8 -0.16
B6.A-Chr3 f 61.3 13.7   8 4.83 0.223 35.8, 78.2 1.29
B6.A-Chr3 m 61.9 21.5   8 7.6 0.347 30.5, 91.3 0.62
B6.A-Chr4 f 41.0 13.7   8 4.86 0.335 21.9, 59.3 -0.16
B6.A-Chr4 m 53.1 23.4   8 8.29 0.442 4.7, 81.9 0.13
B6.A-Chr5 f 59.6 20.6   8 7.28 0.346 37.4, 102.0 1.17
B6.A-Chr5 m 73.5 22.7   8 8.04 0.309 44.7, 111.0 1.26
B6.A-Chr6 f 29.6 11.1   8 3.93 0.375 12.6, 49.0 -0.98
B6.A-Chr6 m 23.7 20.3   8 7.16 0.856 3.4, 64.2 -1.49
B6.A-Chr7 f 46.3 21.4   8 7.55 0.461 22.9, 82.2 0.22
B6.A-Chr7 m 46.3 19.3   8 6.82 0.417 20.7, 72.6 -0.24
B6.A-Chr8 f 48.9 7.1   8 2.51 0.145 36.2, 58.7 0.4
B6.A-Chr8 m 55.9 9.66   8 3.41 0.173 43.5, 70.7 0.29
B6.A-Chr9 f 42.2 12.3   8 4.36 0.293 24.7, 59.6 -0.08
B6.A-Chr9 m 39.7 18.3   8 6.49 0.462 13.6, 75.4 -0.61
B6.A-ChrX f 40.6 11.4   8 4.04 0.281 25.6, 59.0 -0.19
B6.A-ChrX m 57.0 18.7   8 6.6 0.328 23.0, 81.1 0.35
C57BL/6J f 66.2 13.0   8 4.6 0.197 49.1, 89.7 1.64
C57BL/6J m 73.2 20.3   8 7.18 0.278 49.3, 108.0 1.25


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
A/J f 1.925 5.5043 12.7557 0.0
A/J m 0.6125 5.5043 11.4432 0.0
B6.A-Chr1 f 21.9625 5.5043 32.7932 11.1318
B6.A-Chr1 m 45.0875 5.5043 55.9182 34.2568
B6.A-Chr10 f 41.775 5.5043 52.6057 30.9443
B6.A-Chr10 m 65.0625 5.5043 75.8932 54.2318
B6.A-Chr11 f 45.8375 5.5043 56.6682 35.0068
B6.A-Chr11 m 50.0 5.5043 60.8307 39.1693
B6.A-Chr12 f 27.85 5.5043 38.6807 17.0193
B6.A-Chr12 m 28.4125 5.5043 39.2432 17.5818
B6.A-Chr13 f 50.175 5.5043 61.0057 39.3443
B6.A-Chr13 m 70.2375 5.5043 81.0682 59.4068
B6.A-Chr14 f 50.725 5.5043 61.5557 39.8943
B6.A-Chr14 m 57.2625 5.5043 68.0932 46.4318
B6.A-Chr15 f 40.4625 5.5043 51.2932 29.6318
B6.A-Chr15 m 38.55 5.5043 49.3807 27.7193
B6.A-Chr16 f 43.3625 5.5043 54.1932 32.5318
B6.A-Chr16 m 54.55 5.5043 65.3807 43.7193
B6.A-Chr17 f 43.4 5.5043 54.2307 32.5693
B6.A-Chr17 m 36.6125 5.5043 47.4432 25.7818
B6.A-Chr18 f 43.775 5.5043 54.6057 32.9443
B6.A-Chr18 m 60.7125 5.5043 71.5432 49.8818
B6.A-Chr19 f 57.8 5.5043 68.6307 46.9693
B6.A-Chr19 m 75.7 5.5043 86.5307 64.8693
B6.A-Chr2 f 46.5625 5.5043 57.3932 35.7318
B6.A-Chr2 m 47.65 5.5043 58.4807 36.8193
B6.A-Chr3 f 61.3375 5.5043 72.1682 50.5068
B6.A-Chr3 m 61.8875 5.5043 72.7182 51.0568
B6.A-Chr4 f 40.9875 5.5043 51.8182 30.1568
B6.A-Chr4 m 53.05 5.5043 63.8807 42.2193
B6.A-Chr5 f 59.5625 5.5043 70.3932 48.7318
B6.A-Chr5 m 73.5125 5.5043 84.3432 62.6818
B6.A-Chr6 f 29.6125 5.5043 40.4432 18.7818
B6.A-Chr6 m 23.65 5.5043 34.4807 12.8193
B6.A-Chr7 f 46.275 5.5043 57.1057 35.4443
B6.A-Chr7 m 46.325 5.5043 57.1557 35.4943
B6.A-Chr8 f 48.85 5.5043 59.6807 38.0193
B6.A-Chr8 m 55.8875 5.5043 66.7182 45.0568
B6.A-Chr9 f 42.1625 5.5043 52.9932 31.3318
B6.A-Chr9 m 39.6875 5.5043 50.5182 28.8568
B6.A-ChrX f 40.625 5.5043 51.4557 29.7943
B6.A-ChrX m 56.95 5.5043 67.7807 46.1193
C57BL/6J f 66.1875 5.5043 77.0182 55.3568
C57BL/6J m 73.1875 5.5043 84.0182 62.3568


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
A/J both 1.2688 3.8921 8.9272 0.0
B6.A-Chr1 both 33.525 3.8921 41.1835 25.8665
B6.A-Chr10 both 53.4188 3.8921 61.0772 45.7603
B6.A-Chr11 both 47.9187 3.8921 55.5772 40.2603
B6.A-Chr12 both 28.1312 3.8921 35.7897 20.4728
B6.A-Chr13 both 60.2062 3.8921 67.8647 52.5478
B6.A-Chr14 both 53.9938 3.8921 61.6522 46.3353
B6.A-Chr15 both 39.5062 3.8921 47.1647 31.8478
B6.A-Chr16 both 48.9563 3.8921 56.6147 41.2978
B6.A-Chr17 both 40.0063 3.8921 47.6647 32.3478
B6.A-Chr18 both 52.2438 3.8921 59.9022 44.5853
B6.A-Chr19 both 66.75 3.8921 74.4085 59.0915
B6.A-Chr2 both 47.1063 3.8921 54.7647 39.4478
B6.A-Chr3 both 61.6125 3.8921 69.271 53.954
B6.A-Chr4 both 47.0187 3.8921 54.6772 39.3603
B6.A-Chr5 both 66.5375 3.8921 74.196 58.879
B6.A-Chr6 both 26.6312 3.8921 34.2897 18.9728
B6.A-Chr7 both 46.3 3.8921 53.9585 38.6415
B6.A-Chr8 both 52.3687 3.8921 60.0272 44.7103
B6.A-Chr9 both 40.925 3.8921 48.5835 33.2665
B6.A-ChrX both 48.7875 3.8921 56.446 41.129
C57BL/6J both 69.6875 3.8921 77.346 62.029




GWAS analysis not available: Strain panel must be either Inbred, HMDP, BXD, BXH, CXB, or AXB/BXA