Project measure / variable:   Donahue3   episodes_vert

ID, description, units MPD:37705   episodes_vert   number of discrete vertical episodes, 10 min test   [n]  
Data set, strains Donahue3   B6.A consomic w/par   22 strains     sex: both     age: 6-7wks
Procedure open field test
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  STRAIN COMPARISON PLOT
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Donahue3 - number of discrete vertical episodes, 10 min test



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested22 strains22 strains
Mean of the strain means45.8   n 51.9   n
Median of the strain means48.8   n 54.3   n
SD of the strain means± 13.3 ± 15.3
Coefficient of variation (CV)0.291 0.296
Min–max range of strain means2.12   –   63.4   n 1.88   –   71.0   n
Mean sample size per strain8.0   mice 8.0   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 3252.5568 3252.5568 15.2517 0.0001
strain 21 62640.5795 2982.8847 13.9872 < 0.0001
sex:strain 21 6672.4432 317.7354 1.4899 0.0787
Residuals 308 65683.5 213.2581


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
A/J f 2.12 2.64   8 0.934 1.24 -3.28
A/J m 1.88 2.23   8 0.789 1.19 -3.26
B6.A-Chr1 f 25.4 8.73   8 3.09 0.344 13.0, 38.0 -1.53
B6.A-Chr1 m 47.0 16.1   8 5.68 0.342 33.0, 79.0 -0.32
B6.A-Chr10 f 35.9 20.3   8 7.19 0.567 13.0, 72.0 -0.74
B6.A-Chr10 m 54.0 11.6   8 4.09 0.214 32.0, 67.0 0.14
B6.A-Chr11 f 49.6 13.1   8 4.62 0.263 28.0, 75.0 0.29
B6.A-Chr11 m 51.4 10.8   8 3.81 0.21 31.0, 66.0 -0.03
B6.A-Chr12 f 31.8 13.8   8 4.87 0.433 14.0, 55.0 -1.05
B6.A-Chr12 m 38.2 13.1   8 4.64 0.343 20.0, 61.0 -0.89
B6.A-Chr13 f 50.5 11.9   8 4.21 0.236 32.0, 67.0 0.35
B6.A-Chr13 m 66.5 17.7   8 6.25 0.266 47.0, 91.0 0.95
B6.A-Chr14 f 54.4 16.5   8 5.83 0.303 33.0, 78.0 0.65
B6.A-Chr14 m 65.4 14.2   8 5.01 0.217 47.0, 87.0 0.88
B6.A-Chr15 f 47.2 14.4   8 5.11 0.306 27.0, 76.0 0.11
B6.A-Chr15 m 43.5 14.1   8 4.97 0.323 21.0, 66.0 -0.55
B6.A-Chr16 f 41.0 9.75   8 3.45 0.238 28.0, 58.0 -0.36
B6.A-Chr16 m 47.5 12.4   8 4.38 0.261 30.0, 69.0 -0.28
B6.A-Chr17 f 55.8 9.54   8 3.37 0.171 45.0, 77.0 0.75
B6.A-Chr17 m 47.8 10.7   8 3.79 0.224 37.0, 66.0 -0.26
B6.A-Chr18 f 43.9 14.8   8 5.25 0.338 23.0, 73.0 -0.14
B6.A-Chr18 m 55.6 14.1   8 4.99 0.254 41.0, 80.0 0.24
B6.A-Chr19 f 52.4 4.0   8 1.41 0.0763 47.0, 57.0 0.5
B6.A-Chr19 m 70.5 10.7   8 3.8 0.152 55.0, 89.0 1.21
B6.A-Chr2 f 51.1 11.6   8 4.12 0.228 37.0, 76.0 0.4
B6.A-Chr2 m 56.1 14.8   8 5.22 0.263 37.0, 80.0 0.28
B6.A-Chr3 f 56.6 14.9   8 5.28 0.264 34.0, 80.0 0.81
B6.A-Chr3 m 60.5 15.1   8 5.35 0.25 37.0, 76.0 0.56
B6.A-Chr4 f 47.9 15.0   8 5.29 0.313 28.0, 64.0 0.16
B6.A-Chr4 m 56.1 22.6   8 7.99 0.403 8.0, 83.0 0.28
B6.A-Chr5 f 60.0 12.2   8 4.32 0.204 45.0, 78.0 1.07
B6.A-Chr5 m 71.0 24.6   8 8.71 0.347 47.0, 118.0 1.25
B6.A-Chr6 f 42.0 12.7   8 4.49 0.303 20.0, 56.0 -0.28
B6.A-Chr6 m 32.9 22.5   8 7.94 0.683 6.0, 78.0 -1.24
B6.A-Chr7 f 55.1 25.0   8 8.85 0.454 25.0, 88.0 0.7
B6.A-Chr7 m 47.8 16.8   8 5.93 0.351 24.0, 72.0 -0.26
B6.A-Chr8 f 51.8 11.3   8 4.01 0.219 39.0, 71.0 0.45
B6.A-Chr8 m 59.1 15.9   8 5.6 0.268 37.0, 85.0 0.47
B6.A-Chr9 f 47.9 13.1   8 4.62 0.273 31.0, 65.0 0.16
B6.A-Chr9 m 42.6 16.4   8 5.8 0.385 21.0, 73.0 -0.6
B6.A-ChrX f 41.6 13.8   8 4.9 0.333 21.0, 61.0 -0.31
B6.A-ChrX m 54.6 15.0   8 5.31 0.275 31.0, 73.0 0.18
C57BL/6J f 63.4 13.1   8 4.65 0.207 41.0, 80.0 1.32
C57BL/6J m 71.0 14.9   8 5.26 0.21 50.0, 92.0 1.25


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
A/J f 2.125 5.1631 12.2843 0.0
A/J m 1.875 5.1631 12.0343 0.0
B6.A-Chr1 f 25.375 5.1631 35.5343 15.2157
B6.A-Chr1 m 47.0 5.1631 57.1593 36.8407
B6.A-Chr10 f 35.875 5.1631 46.0343 25.7157
B6.A-Chr10 m 54.0 5.1631 64.1593 43.8407
B6.A-Chr11 f 49.625 5.1631 59.7843 39.4657
B6.A-Chr11 m 51.375 5.1631 61.5343 41.2157
B6.A-Chr12 f 31.75 5.1631 41.9093 21.5907
B6.A-Chr12 m 38.25 5.1631 48.4093 28.0907
B6.A-Chr13 f 50.5 5.1631 60.6593 40.3407
B6.A-Chr13 m 66.5 5.1631 76.6593 56.3407
B6.A-Chr14 f 54.375 5.1631 64.5343 44.2157
B6.A-Chr14 m 65.375 5.1631 75.5343 55.2157
B6.A-Chr15 f 47.25 5.1631 57.4093 37.0907
B6.A-Chr15 m 43.5 5.1631 53.6593 33.3407
B6.A-Chr16 f 41.0 5.1631 51.1593 30.8407
B6.A-Chr16 m 47.5 5.1631 57.6593 37.3407
B6.A-Chr17 f 55.75 5.1631 65.9093 45.5907
B6.A-Chr17 m 47.75 5.1631 57.9093 37.5907
B6.A-Chr18 f 43.875 5.1631 54.0343 33.7157
B6.A-Chr18 m 55.625 5.1631 65.7843 45.4657
B6.A-Chr19 f 52.375 5.1631 62.5343 42.2157
B6.A-Chr19 m 70.5 5.1631 80.6593 60.3407
B6.A-Chr2 f 51.125 5.1631 61.2843 40.9657
B6.A-Chr2 m 56.125 5.1631 66.2843 45.9657
B6.A-Chr3 f 56.625 5.1631 66.7843 46.4657
B6.A-Chr3 m 60.5 5.1631 70.6593 50.3407
B6.A-Chr4 f 47.875 5.1631 58.0343 37.7157
B6.A-Chr4 m 56.125 5.1631 66.2843 45.9657
B6.A-Chr5 f 60.0 5.1631 70.1593 49.8407
B6.A-Chr5 m 71.0 5.1631 81.1593 60.8407
B6.A-Chr6 f 42.0 5.1631 52.1593 31.8407
B6.A-Chr6 m 32.875 5.1631 43.0343 22.7157
B6.A-Chr7 f 55.125 5.1631 65.2843 44.9657
B6.A-Chr7 m 47.75 5.1631 57.9093 37.5907
B6.A-Chr8 f 51.75 5.1631 61.9093 41.5907
B6.A-Chr8 m 59.125 5.1631 69.2843 48.9657
B6.A-Chr9 f 47.875 5.1631 58.0343 37.7157
B6.A-Chr9 m 42.625 5.1631 52.7843 32.4657
B6.A-ChrX f 41.625 5.1631 51.7843 31.4657
B6.A-ChrX m 54.625 5.1631 64.7843 44.4657
C57BL/6J f 63.375 5.1631 73.5343 53.2157
C57BL/6J m 71.0 5.1631 81.1593 60.8407


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
A/J both 2.0 3.6508 9.1837 0.0
B6.A-Chr1 both 36.1875 3.6508 43.3712 29.0038
B6.A-Chr10 both 44.9375 3.6508 52.1212 37.7538
B6.A-Chr11 both 50.5 3.6508 57.6837 43.3163
B6.A-Chr12 both 35.0 3.6508 42.1837 27.8163
B6.A-Chr13 both 58.5 3.6508 65.6837 51.3163
B6.A-Chr14 both 59.875 3.6508 67.0587 52.6913
B6.A-Chr15 both 45.375 3.6508 52.5587 38.1913
B6.A-Chr16 both 44.25 3.6508 51.4337 37.0663
B6.A-Chr17 both 51.75 3.6508 58.9337 44.5663
B6.A-Chr18 both 49.75 3.6508 56.9337 42.5663
B6.A-Chr19 both 61.4375 3.6508 68.6212 54.2538
B6.A-Chr2 both 53.625 3.6508 60.8087 46.4413
B6.A-Chr3 both 58.5625 3.6508 65.7462 51.3788
B6.A-Chr4 both 52.0 3.6508 59.1837 44.8163
B6.A-Chr5 both 65.5 3.6508 72.6837 58.3163
B6.A-Chr6 both 37.4375 3.6508 44.6212 30.2538
B6.A-Chr7 both 51.4375 3.6508 58.6212 44.2538
B6.A-Chr8 both 55.4375 3.6508 62.6212 48.2538
B6.A-Chr9 both 45.25 3.6508 52.4337 38.0663
B6.A-ChrX both 48.125 3.6508 55.3087 40.9413
C57BL/6J both 67.1875 3.6508 74.3712 60.0038




GWAS analysis not available: Strain panel must be either Inbred, HMDP, BXD, BXH, CXB, or AXB/BXA