Project measure / variable:   Donahue3   breaks_vert

ID, description, units MPD:37704   breaks_vert   total number of vertical beam breaks, 10 min test   [n]  
Data set, strains Donahue3   B6.A consomic w/par   22 strains     sex: both     age: 6-7wks
Procedure open field test
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  STRAIN COMPARISON PLOT
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Donahue3 - total number of vertical beam breaks, 10 min test



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested22 strains22 strains
Mean of the strain means88.5   n 105   n
Median of the strain means92.3   n 104   n
SD of the strain means± 28.5 ± 38.1
Coefficient of variation (CV)0.322 0.362
Min–max range of strain means3.25   –   135   n 2.25   –   173   n
Mean sample size per strain8.0   mice 8.0   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 24806.8892 24806.8892 21.0354 < 0.0001
strain 21 341947.3665 16283.2079 13.8076 < 0.0001
sex:strain 21 38083.7983 1813.5142 1.5378 0.0636
Residuals 308 363222.875 1179.295


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
A/J f 3.25 4.43   8 1.57 1.36 -2.99
A/J m 2.25 2.76   8 0.977 1.23 -2.7
B6.A-Chr1 f 47.0 21.7   8 7.66 0.461 17.0, 88.0 -1.46
B6.A-Chr1 m 82.6 30.7   8 10.8 0.371 54.0, 141.0 -0.6
B6.A-Chr10 f 73.2 47.7   8 16.9 0.652 23.0, 171.0 -0.54
B6.A-Chr10 m 122.0 25.9   8 9.16 0.213 71.0, 162.0 0.44
B6.A-Chr11 f 95.9 42.8   8 15.1 0.446 45.0, 192.0 0.26
B6.A-Chr11 m 92.9 31.5   8 11.1 0.339 54.0, 150.0 -0.33
B6.A-Chr12 f 54.5 26.6   8 9.41 0.488 19.0, 101.0 -1.19
B6.A-Chr12 m 65.9 26.4   8 9.34 0.401 29.0, 118.0 -1.03
B6.A-Chr13 f 102.0 27.2   8 9.62 0.265 60.0, 144.0 0.47
B6.A-Chr13 m 173.0 42.0   8 14.8 0.242 119.0, 236.0 1.77
B6.A-Chr14 f 101.0 39.2   8 13.8 0.387 47.0, 168.0 0.44
B6.A-Chr14 m 121.0 32.9   8 11.6 0.272 79.0, 176.0 0.41
B6.A-Chr15 f 90.6 36.8   8 13.0 0.406 41.0, 165.0 0.07
B6.A-Chr15 m 86.4 28.8   8 10.2 0.334 50.0, 144.0 -0.5
B6.A-Chr16 f 79.5 21.3   8 7.54 0.268 43.0, 104.0 -0.32
B6.A-Chr16 m 100.0 29.1   8 10.3 0.29 70.0, 143.0 -0.14
B6.A-Chr17 f 99.5 27.6   8 9.77 0.278 68.0, 147.0 0.38
B6.A-Chr17 m 82.2 25.0   8 8.84 0.304 55.0, 132.0 -0.61
B6.A-Chr18 f 82.4 25.8   8 9.12 0.313 40.0, 129.0 -0.21
B6.A-Chr18 m 104.0 26.7   8 9.45 0.256 59.0, 138.0 -0.04
B6.A-Chr19 f 112.0 18.0   8 6.37 0.161 90.0, 135.0 0.82
B6.A-Chr19 m 150.0 32.8   8 11.6 0.219 104.0, 189.0 1.17
B6.A-Chr2 f 89.5 20.4   8 7.22 0.228 62.0, 125.0 0.03
B6.A-Chr2 m 107.0 41.0   8 14.5 0.384 64.0, 179.0 0.04
B6.A-Chr3 f 121.0 36.7   8 13.0 0.304 71.0, 172.0 1.14
B6.A-Chr3 m 130.0 50.2   8 17.7 0.386 59.0, 187.0 0.65
B6.A-Chr4 f 87.2 29.8   8 10.5 0.342 39.0, 125.0 -0.05
B6.A-Chr4 m 108.0 49.0   8 17.3 0.454 9.0, 164.0 0.07
B6.A-Chr5 f 124.0 21.7   8 7.68 0.175 98.0, 159.0 1.24
B6.A-Chr5 m 161.0 77.4   8 27.4 0.481 90.0, 298.0 1.46
B6.A-Chr6 f 70.9 25.7   8 9.1 0.363 34.0, 107.0 -0.62
B6.A-Chr6 m 56.2 44.0   8 15.5 0.782 10.0, 148.0 -1.29
B6.A-Chr7 f 98.1 51.6   8 18.2 0.526 37.0, 183.0 0.34
B6.A-Chr7 m 92.1 31.9   8 11.3 0.347 45.0, 135.0 -0.35
B6.A-Chr8 f 110.0 16.0   8 5.65 0.145 87.0, 129.0 0.75
B6.A-Chr8 m 124.0 31.5   8 11.1 0.254 83.0, 183.0 0.49
B6.A-Chr9 f 94.0 26.5   8 9.37 0.282 60.0, 124.0 0.19
B6.A-Chr9 m 93.9 45.6   8 16.1 0.486 41.0, 185.0 -0.3
B6.A-ChrX f 76.9 29.0   8 10.3 0.378 44.0, 124.0 -0.41
B6.A-ChrX m 104.0 32.5   8 11.5 0.311 45.0, 145.0 -0.04
C57BL/6J f 135.0 35.9   8 12.7 0.266 89.0, 207.0 1.63
C57BL/6J m 159.0 36.2   8 12.8 0.228 108.0, 219.0 1.41


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
A/J f 3.25 12.1413 27.1404 0.0
A/J m 2.25 12.1413 26.1404 0.0
B6.A-Chr1 f 47.0 12.1413 70.8904 23.1096
B6.A-Chr1 m 82.625 12.1413 106.5154 58.7346
B6.A-Chr10 f 73.25 12.1413 97.1404 49.3596
B6.A-Chr10 m 121.625 12.1413 145.5154 97.7346
B6.A-Chr11 f 95.875 12.1413 119.7654 71.9846
B6.A-Chr11 m 92.875 12.1413 116.7654 68.9846
B6.A-Chr12 f 54.5 12.1413 78.3904 30.6096
B6.A-Chr12 m 65.875 12.1413 89.7654 41.9846
B6.A-Chr13 f 102.5 12.1413 126.3904 78.6096
B6.A-Chr13 m 173.125 12.1413 197.0154 149.2346
B6.A-Chr14 f 101.25 12.1413 125.1404 77.3596
B6.A-Chr14 m 121.0 12.1413 144.8904 97.1096
B6.A-Chr15 f 90.625 12.1413 114.5154 66.7346
B6.A-Chr15 m 86.375 12.1413 110.2654 62.4846
B6.A-Chr16 f 79.5 12.1413 103.3904 55.6096
B6.A-Chr16 m 100.375 12.1413 124.2654 76.4846
B6.A-Chr17 f 99.5 12.1413 123.3904 75.6096
B6.A-Chr17 m 82.25 12.1413 106.1404 58.3596
B6.A-Chr18 f 82.375 12.1413 106.2654 58.4846
B6.A-Chr18 m 104.5 12.1413 128.3904 80.6096
B6.A-Chr19 f 111.75 12.1413 135.6404 87.8596
B6.A-Chr19 m 149.75 12.1413 173.6404 125.8596
B6.A-Chr2 f 89.5 12.1413 113.3904 65.6096
B6.A-Chr2 m 106.625 12.1413 130.5154 82.7346
B6.A-Chr3 f 120.625 12.1413 144.5154 96.7346
B6.A-Chr3 m 129.875 12.1413 153.7654 105.9846
B6.A-Chr4 f 87.25 12.1413 111.1404 63.3596
B6.A-Chr4 m 107.875 12.1413 131.7654 83.9846
B6.A-Chr5 f 124.25 12.1413 148.1404 100.3596
B6.A-Chr5 m 160.75 12.1413 184.6404 136.8596
B6.A-Chr6 f 70.875 12.1413 94.7654 46.9846
B6.A-Chr6 m 56.25 12.1413 80.1404 32.3596
B6.A-Chr7 f 98.125 12.1413 122.0154 74.2346
B6.A-Chr7 m 92.125 12.1413 116.0154 68.2346
B6.A-Chr8 f 110.0 12.1413 133.8904 86.1096
B6.A-Chr8 m 123.875 12.1413 147.7654 99.9846
B6.A-Chr9 f 94.0 12.1413 117.8904 70.1096
B6.A-Chr9 m 93.875 12.1413 117.7654 69.9846
B6.A-ChrX f 76.875 12.1413 100.7654 52.9846
B6.A-ChrX m 104.375 12.1413 128.2654 80.4846
C57BL/6J f 134.75 12.1413 158.6404 110.8596
C57BL/6J m 158.75 12.1413 182.6404 134.8596


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
A/J both 2.75 8.5852 19.6431 0.0
B6.A-Chr1 both 64.8125 8.5852 81.7056 47.9194
B6.A-Chr10 both 97.4375 8.5852 114.3306 80.5444
B6.A-Chr11 both 94.375 8.5852 111.2681 77.4819
B6.A-Chr12 both 60.1875 8.5852 77.0806 43.2944
B6.A-Chr13 both 137.8125 8.5852 154.7056 120.9194
B6.A-Chr14 both 111.125 8.5852 128.0181 94.2319
B6.A-Chr15 both 88.5 8.5852 105.3931 71.6069
B6.A-Chr16 both 89.9375 8.5852 106.8306 73.0444
B6.A-Chr17 both 90.875 8.5852 107.7681 73.9819
B6.A-Chr18 both 93.4375 8.5852 110.3306 76.5444
B6.A-Chr19 both 130.75 8.5852 147.6431 113.8569
B6.A-Chr2 both 98.0625 8.5852 114.9556 81.1694
B6.A-Chr3 both 125.25 8.5852 142.1431 108.3569
B6.A-Chr4 both 97.5625 8.5852 114.4556 80.6694
B6.A-Chr5 both 142.5 8.5852 159.3931 125.6069
B6.A-Chr6 both 63.5625 8.5852 80.4556 46.6694
B6.A-Chr7 both 95.125 8.5852 112.0181 78.2319
B6.A-Chr8 both 116.9375 8.5852 133.8306 100.0444
B6.A-Chr9 both 93.9375 8.5852 110.8306 77.0444
B6.A-ChrX both 90.625 8.5852 107.5181 73.7319
C57BL/6J both 146.75 8.5852 163.6431 129.8569




GWAS analysis not available: Strain panel must be either Inbred, HMDP, BXD, BXH, CXB, or AXB/BXA