Project measure / variable:   Donahue3   duration_horiz

ID, description, units MPD:37703   duration_horiz   duration of total horizontal activity, 10 min test   [s]  
Data set, strains Donahue3   B6.A consomic w/par   22 strains     sex: both     age: 6-7wks
Procedure open field test
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  STRAIN COMPARISON PLOT
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Donahue3 - duration of total horizontal activity, 10 min test



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested22 strains22 strains
Mean of the strain means171   s 183   s
Median of the strain means178   s 192   s
SD of the strain means± 43.8 ± 44.1
Coefficient of variation (CV)0.257 0.240
Min–max range of strain means20.4   –   222   s 19.6   –   232   s
Mean sample size per strain8.0   mice 8.0   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 14272.3692 14272.3692 14.9756 0.0001
strain 21 619285.9272 29489.8061 30.9429 < 0.0001
sex:strain 21 29330.532 1396.692 1.4655 0.0875
Residuals 308 293536.6075 953.0409


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
A/J f 20.4 17.4   8 6.14 0.851 0.3, 42.0 -3.43
A/J m 19.6 19.0   8 6.72 0.97 3.4, 62.4 -3.71
B6.A-Chr1 f 145.0 38.3   8 13.5 0.265 68.9, 192.0 -0.59
B6.A-Chr1 m 180.0 21.2   8 7.48 0.117 141.0, 214.0 -0.07
B6.A-Chr10 f 117.0 18.3   8 6.47 0.157 90.2, 143.0 -1.22
B6.A-Chr10 m 129.0 13.7   8 4.83 0.106 110.0, 147.0 -1.23
B6.A-Chr11 f 202.0 32.2   8 11.4 0.159 157.0, 247.0 0.72
B6.A-Chr11 m 204.0 21.5   8 7.61 0.105 166.0, 234.0 0.47
B6.A-Chr12 f 160.0 33.4   8 11.8 0.21 123.0, 206.0 -0.24
B6.A-Chr12 m 168.0 25.9   8 9.15 0.154 137.0, 216.0 -0.35
B6.A-Chr13 f 153.0 25.1   8 8.89 0.164 127.0, 205.0 -0.4
B6.A-Chr13 m 188.0 43.1   8 15.2 0.229 144.0, 260.0 0.11
B6.A-Chr14 f 194.0 39.6   8 14.0 0.204 148.0, 270.0 0.53
B6.A-Chr14 m 208.0 29.7   8 10.5 0.143 166.0, 254.0 0.56
B6.A-Chr15 f 199.0 32.1   8 11.3 0.161 157.0, 257.0 0.65
B6.A-Chr15 m 176.0 32.4   8 11.5 0.184 133.0, 232.0 -0.17
B6.A-Chr16 f 191.0 24.2   8 8.57 0.127 150.0, 221.0 0.47
B6.A-Chr16 m 202.0 33.1   8 11.7 0.164 163.0, 249.0 0.42
B6.A-Chr17 f 222.0 46.9   8 16.6 0.211 171.0, 318.0 1.17
B6.A-Chr17 m 214.0 21.5   8 7.6 0.1 184.0, 249.0 0.7
B6.A-Chr18 f 158.0 29.9   8 10.6 0.189 123.0, 205.0 -0.29
B6.A-Chr18 m 180.0 32.6   8 11.5 0.181 133.0, 223.0 -0.07
B6.A-Chr19 f 200.0 33.0   8 11.7 0.165 161.0, 260.0 0.67
B6.A-Chr19 m 232.0 34.5   8 12.2 0.149 191.0, 290.0 1.1
B6.A-Chr2 f 193.0 35.0   8 12.4 0.181 171.0, 274.0 0.51
B6.A-Chr2 m 215.0 19.5   8 6.9 0.0907 186.0, 249.0 0.72
B6.A-Chr3 f 152.0 28.9   8 10.2 0.191 106.0, 190.0 -0.43
B6.A-Chr3 m 164.0 33.9   8 12.0 0.207 107.0, 204.0 -0.44
B6.A-Chr4 f 161.0 48.8   8 17.2 0.303 119.0, 263.0 -0.22
B6.A-Chr4 m 167.0 34.2   8 12.1 0.204 110.0, 204.0 -0.37
B6.A-Chr5 f 208.0 30.8   8 10.9 0.148 178.0, 276.0 0.85
B6.A-Chr5 m 230.0 37.4   8 13.2 0.163 185.0, 282.0 1.06
B6.A-Chr6 f 157.0 26.0   8 9.18 0.165 126.0, 209.0 -0.31
B6.A-Chr6 m 159.0 16.1   8 5.71 0.102 135.0, 185.0 -0.55
B6.A-Chr7 f 213.0 39.1   8 13.8 0.184 163.0, 268.0 0.97
B6.A-Chr7 m 204.0 35.9   8 12.7 0.175 170.0, 278.0 0.47
B6.A-Chr8 f 140.0 26.6   8 9.4 0.19 95.4, 168.0 -0.7
B6.A-Chr8 m 189.0 27.2   8 9.62 0.144 141.0, 222.0 0.13
B6.A-Chr9 f 210.0 25.7   8 9.08 0.122 173.0, 251.0 0.9
B6.A-Chr9 m 197.0 27.6   8 9.76 0.14 171.0, 256.0 0.31
B6.A-ChrX f 166.0 20.7   8 7.31 0.124 131.0, 191.0 -0.11
B6.A-ChrX m 212.0 29.2   8 10.3 0.138 174.0, 267.0 0.65
C57BL/6J f 192.0 39.8   8 14.1 0.208 147.0, 278.0 0.49
C57BL/6J m 195.0 31.3   8 11.1 0.161 169.0, 260.0 0.27


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
A/J f 20.3875 10.9147 41.8643 0.0
A/J m 19.575 10.9147 41.0518 0.0
B6.A-Chr1 f 144.6625 10.9147 166.1393 123.1857
B6.A-Chr1 m 180.4875 10.9147 201.9643 159.0107
B6.A-Chr10 f 116.725 10.9147 138.2018 95.2482
B6.A-Chr10 m 129.15 10.9147 150.6268 107.6732
B6.A-Chr11 f 202.225 10.9147 223.7018 180.7482
B6.A-Chr11 m 204.425 10.9147 225.9018 182.9482
B6.A-Chr12 f 159.5125 10.9147 180.9893 138.0357
B6.A-Chr12 m 167.85 10.9147 189.3268 146.3732
B6.A-Chr13 f 153.4375 10.9147 174.9143 131.9607
B6.A-Chr13 m 188.2875 10.9147 209.7643 166.8107
B6.A-Chr14 f 194.5 10.9147 215.9768 173.0232
B6.A-Chr14 m 208.1 10.9147 229.5768 186.6232
B6.A-Chr15 f 198.8125 10.9147 220.2893 177.3357
B6.A-Chr15 m 176.45 10.9147 197.9268 154.9732
B6.A-Chr16 f 190.8875 10.9147 212.3643 169.4107
B6.A-Chr16 m 202.0625 10.9147 223.5393 180.5857
B6.A-Chr17 f 221.875 10.9147 243.3518 200.3982
B6.A-Chr17 m 214.0 10.9147 235.4768 192.5232
B6.A-Chr18 f 158.075 10.9147 179.5518 136.5982
B6.A-Chr18 m 179.6375 10.9147 201.1143 158.1607
B6.A-Chr19 f 200.05 10.9147 221.5268 178.5732
B6.A-Chr19 m 231.8 10.9147 253.2768 210.3232
B6.A-Chr2 f 193.45 10.9147 214.9268 171.9732
B6.A-Chr2 m 215.125 10.9147 236.6018 193.6482
B6.A-Chr3 f 151.5375 10.9147 173.0143 130.0607
B6.A-Chr3 m 163.6 10.9147 185.0768 142.1232
B6.A-Chr4 f 161.2125 10.9147 182.6893 139.7357
B6.A-Chr4 m 167.4625 10.9147 188.9393 145.9857
B6.A-Chr5 f 207.725 10.9147 229.2018 186.2482
B6.A-Chr5 m 229.525 10.9147 251.0018 208.0482
B6.A-Chr6 f 156.9875 10.9147 178.4643 135.5107
B6.A-Chr6 m 158.7 10.9147 180.1768 137.2232
B6.A-Chr7 f 212.925 10.9147 234.4018 191.4482
B6.A-Chr7 m 204.4375 10.9147 225.9143 182.9607
B6.A-Chr8 f 140.2625 10.9147 161.7393 118.7857
B6.A-Chr8 m 188.575 10.9147 210.0518 167.0982
B6.A-Chr9 f 210.35 10.9147 231.8268 188.8732
B6.A-Chr9 m 197.1875 10.9147 218.6643 175.7107
B6.A-ChrX f 166.15 10.9147 187.6268 144.6732
B6.A-ChrX m 212.025 10.9147 233.5018 190.5482
C57BL/6J f 191.5375 10.9147 213.0143 170.0607
C57BL/6J m 195.0 10.9147 216.4768 173.5232


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
A/J both 19.9813 7.7178 35.1676 4.7949
B6.A-Chr1 both 162.575 7.7178 177.7614 147.3886
B6.A-Chr10 both 122.9375 7.7178 138.1239 107.7511
B6.A-Chr11 both 203.325 7.7178 218.5114 188.1386
B6.A-Chr12 both 163.6812 7.7178 178.8676 148.4949
B6.A-Chr13 both 170.8625 7.7178 186.0489 155.6761
B6.A-Chr14 both 201.3 7.7178 216.4864 186.1136
B6.A-Chr15 both 187.6312 7.7178 202.8176 172.4449
B6.A-Chr16 both 196.475 7.7178 211.6614 181.2886
B6.A-Chr17 both 217.9375 7.7178 233.1239 202.7511
B6.A-Chr18 both 168.8563 7.7178 184.0426 153.6699
B6.A-Chr19 both 215.925 7.7178 231.1114 200.7386
B6.A-Chr2 both 204.2875 7.7178 219.4739 189.1011
B6.A-Chr3 both 157.5688 7.7178 172.7551 142.3824
B6.A-Chr4 both 164.3375 7.7178 179.5239 149.1511
B6.A-Chr5 both 218.625 7.7178 233.8114 203.4386
B6.A-Chr6 both 157.8437 7.7178 173.0301 142.6574
B6.A-Chr7 both 208.6812 7.7178 223.8676 193.4949
B6.A-Chr8 both 164.4187 7.7178 179.6051 149.2324
B6.A-Chr9 both 203.7687 7.7178 218.9551 188.5824
B6.A-ChrX both 189.0875 7.7178 204.2739 173.9011
C57BL/6J both 193.2688 7.7178 208.4551 178.0824




GWAS analysis not available: Strain panel must be either Inbred, HMDP, BXD, BXH, CXB, or AXB/BXA