Project measure / variable:   Donahue3   breaks_horiz

ID, description, units MPD:37701   breaks_horiz   total number of horizontal beam breaks, 10 min test   [n]  
Data set, strains Donahue3   B6.A consomic w/par   22 strains     sex: both     age: 6-7wks
Procedure open field test
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  STRAIN COMPARISON PLOT
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Donahue3 - total number of horizontal beam breaks, 10 min test



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested22 strains22 strains
Mean of the strain means2930   n 3075   n
Median of the strain means2954   n 3176   n
SD of the strain means± 611 ± 614
Coefficient of variation (CV)0.209 0.200
Min–max range of strain means618   –   3503   n 648   –   3756   n
Mean sample size per strain8.0   mice 8.0   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 1838762.7301 1838762.7301 10.8025 0.0011
strain 21 121729794.7983 5796656.8952 34.0547 < 0.0001
sex:strain 21 4370588.9574 208123.2837 1.2227 0.2297
Residuals 308 52426580.875 170216.1717


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
A/J f 618.0 272.0   8 96.2 0.44 276.0, 1071.0 -3.78
A/J m 648.0 305.0   8 108.0 0.47 386.0, 1336.0 -3.95
B6.A-Chr1 f 2500.0 535.0   8 189.0 0.214 1491.0, 3037.0 -0.7
B6.A-Chr1 m 2921.0 361.0   8 128.0 0.123 2334.0, 3440.0 -0.25
B6.A-Chr10 f 2409.0 291.0   8 103.0 0.121 2040.0, 2873.0 -0.85
B6.A-Chr10 m 2622.0 224.0   8 79.0 0.0853 2322.0, 3025.0 -0.74
B6.A-Chr11 f 3272.0 516.0   8 183.0 0.158 2729.0, 4254.0 0.56
B6.A-Chr11 m 3053.0 288.0   8 102.0 0.0943 2655.0, 3517.0 -0.04
B6.A-Chr12 f 2576.0 427.0   8 151.0 0.166 2234.0, 3193.0 -0.58
B6.A-Chr12 m 2881.0 378.0   8 134.0 0.131 2293.0, 3498.0 -0.32
B6.A-Chr13 f 2882.0 418.0   8 148.0 0.145 2237.0, 3366.0 -0.08
B6.A-Chr13 m 3445.0 464.0   8 164.0 0.135 3017.0, 4344.0 0.6
B6.A-Chr14 f 3238.0 429.0   8 152.0 0.133 2527.0, 3806.0 0.5
B6.A-Chr14 m 3357.0 408.0   8 144.0 0.121 2775.0, 3990.0 0.46
B6.A-Chr15 f 3289.0 376.0   8 133.0 0.114 2650.0, 3745.0 0.59
B6.A-Chr15 m 3132.0 323.0   8 114.0 0.103 2845.0, 3874.0 0.09
B6.A-Chr16 f 3195.0 295.0   8 104.0 0.0923 2755.0, 3651.0 0.43
B6.A-Chr16 m 3225.0 404.0   8 143.0 0.125 2807.0, 3810.0 0.24
B6.A-Chr17 f 3447.0 605.0   8 214.0 0.175 2452.0, 4617.0 0.85
B6.A-Chr17 m 3311.0 314.0   8 111.0 0.0947 2884.0, 3903.0 0.38
B6.A-Chr18 f 2744.0 451.0   8 160.0 0.165 2192.0, 3674.0 -0.3
B6.A-Chr18 m 2902.0 366.0   8 130.0 0.126 2413.0, 3316.0 -0.28
B6.A-Chr19 f 3314.0 478.0   8 169.0 0.144 2850.0, 4281.0 0.63
B6.A-Chr19 m 3756.0 424.0   8 150.0 0.113 3250.0, 4439.0 1.11
B6.A-Chr2 f 2858.0 412.0   8 146.0 0.144 2426.0, 3588.0 -0.12
B6.A-Chr2 m 3108.0 342.0   8 121.0 0.11 2560.0, 3518.0 0.05
B6.A-Chr3 f 2959.0 444.0   8 157.0 0.15 2410.0, 3661.0 0.05
B6.A-Chr3 m 3111.0 544.0   8 192.0 0.175 2018.0, 3661.0 0.06
B6.A-Chr4 f 2911.0 696.0   8 246.0 0.239 2314.0, 4362.0 -0.03
B6.A-Chr4 m 2894.0 428.0   8 151.0 0.148 2013.0, 3289.0 -0.29
B6.A-Chr5 f 3503.0 375.0   8 132.0 0.107 3062.0, 4305.0 0.94
B6.A-Chr5 m 3699.0 527.0   8 186.0 0.142 3130.0, 4795.0 1.02
B6.A-Chr6 f 2749.0 322.0   8 114.0 0.117 2328.0, 3230.0 -0.3
B6.A-Chr6 m 2774.0 262.0   8 92.6 0.0944 2306.0, 3141.0 -0.49
B6.A-Chr7 f 3492.0 497.0   8 176.0 0.142 2694.0, 4349.0 0.92
B6.A-Chr7 m 3471.0 513.0   8 181.0 0.148 2706.0, 4443.0 0.65
B6.A-Chr8 f 2848.0 374.0   8 132.0 0.131 2315.0, 3439.0 -0.13
B6.A-Chr8 m 3386.0 331.0   8 117.0 0.0976 2997.0, 3823.0 0.51
B6.A-Chr9 f 3412.0 336.0   8 119.0 0.0984 2843.0, 3819.0 0.79
B6.A-Chr9 m 3221.0 476.0   8 168.0 0.148 2557.0, 4110.0 0.24
B6.A-ChrX f 2948.0 335.0   8 118.0 0.113 2540.0, 3475.0 0.03
B6.A-ChrX m 3302.0 268.0   8 94.6 0.0811 2950.0, 3857.0 0.37
C57BL/6J f 3301.0 481.0   8 170.0 0.146 2729.0, 4268.0 0.61
C57BL/6J m 3426.0 314.0   8 111.0 0.0918 3152.0, 3990.0 0.57


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
A/J f 617.5 145.8665 904.5208 330.4792
A/J m 648.375 145.8665 935.3958 361.3542
B6.A-Chr1 f 2500.5 145.8665 2787.5208 2213.4792
B6.A-Chr1 m 2920.875 145.8665 3207.8958 2633.8542
B6.A-Chr10 f 2409.375 145.8665 2696.3958 2122.3542
B6.A-Chr10 m 2622.25 145.8665 2909.2708 2335.2292
B6.A-Chr11 f 3272.0 145.8665 3559.0208 2984.9792
B6.A-Chr11 m 3052.875 145.8665 3339.8958 2765.8542
B6.A-Chr12 f 2576.25 145.8665 2863.2708 2289.2292
B6.A-Chr12 m 2881.375 145.8665 3168.3958 2594.3542
B6.A-Chr13 f 2881.5 145.8665 3168.5208 2594.4792
B6.A-Chr13 m 3444.875 145.8665 3731.8958 3157.8542
B6.A-Chr14 f 3238.375 145.8665 3525.3958 2951.3542
B6.A-Chr14 m 3357.0 145.8665 3644.0208 3069.9792
B6.A-Chr15 f 3288.75 145.8665 3575.7708 3001.7292
B6.A-Chr15 m 3132.5 145.8665 3419.5208 2845.4792
B6.A-Chr16 f 3194.875 145.8665 3481.8958 2907.8542
B6.A-Chr16 m 3225.25 145.8665 3512.2708 2938.2292
B6.A-Chr17 f 3447.375 145.8665 3734.3958 3160.3542
B6.A-Chr17 m 3310.875 145.8665 3597.8958 3023.8542
B6.A-Chr18 f 2743.75 145.8665 3030.7708 2456.7292
B6.A-Chr18 m 2902.0 145.8665 3189.0208 2614.9792
B6.A-Chr19 f 3314.125 145.8665 3601.1458 3027.1042
B6.A-Chr19 m 3755.875 145.8665 4042.8958 3468.8542
B6.A-Chr2 f 2858.5 145.8665 3145.5208 2571.4792
B6.A-Chr2 m 3107.75 145.8665 3394.7708 2820.7292
B6.A-Chr3 f 2958.875 145.8665 3245.8958 2671.8542
B6.A-Chr3 m 3111.125 145.8665 3398.1458 2824.1042
B6.A-Chr4 f 2911.375 145.8665 3198.3958 2624.3542
B6.A-Chr4 m 2894.0 145.8665 3181.0208 2606.9792
B6.A-Chr5 f 3502.625 145.8665 3789.6458 3215.6042
B6.A-Chr5 m 3698.625 145.8665 3985.6458 3411.6042
B6.A-Chr6 f 2748.625 145.8665 3035.6458 2461.6042
B6.A-Chr6 m 2774.375 145.8665 3061.3958 2487.3542
B6.A-Chr7 f 3492.0 145.8665 3779.0208 3204.9792
B6.A-Chr7 m 3471.0 145.8665 3758.0208 3183.9792
B6.A-Chr8 f 2848.25 145.8665 3135.2708 2561.2292
B6.A-Chr8 m 3386.375 145.8665 3673.3958 3099.3542
B6.A-Chr9 f 3412.375 145.8665 3699.3958 3125.3542
B6.A-Chr9 m 3220.625 145.8665 3507.6458 2933.6042
B6.A-ChrX f 2947.75 145.8665 3234.7708 2660.7292
B6.A-ChrX m 3302.125 145.8665 3589.1458 3015.1042
C57BL/6J f 3301.125 145.8665 3588.1458 3014.1042
C57BL/6J m 3425.875 145.8665 3712.8958 3138.8542


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
A/J both 632.9375 103.1432 835.8919 429.9831
B6.A-Chr1 both 2710.6875 103.1432 2913.6419 2507.7331
B6.A-Chr10 both 2515.8125 103.1432 2718.7669 2312.8581
B6.A-Chr11 both 3162.4375 103.1432 3365.3919 2959.4831
B6.A-Chr12 both 2728.8125 103.1432 2931.7669 2525.8581
B6.A-Chr13 both 3163.1875 103.1432 3366.1419 2960.2331
B6.A-Chr14 both 3297.6875 103.1432 3500.6419 3094.7331
B6.A-Chr15 both 3210.625 103.1432 3413.5794 3007.6706
B6.A-Chr16 both 3210.0625 103.1432 3413.0169 3007.1081
B6.A-Chr17 both 3379.125 103.1432 3582.0794 3176.1706
B6.A-Chr18 both 2822.875 103.1432 3025.8294 2619.9206
B6.A-Chr19 both 3535.0 103.1432 3737.9544 3332.0456
B6.A-Chr2 both 2983.125 103.1432 3186.0794 2780.1706
B6.A-Chr3 both 3035.0 103.1432 3237.9544 2832.0456
B6.A-Chr4 both 2902.6875 103.1432 3105.6419 2699.7331
B6.A-Chr5 both 3600.625 103.1432 3803.5794 3397.6706
B6.A-Chr6 both 2761.5 103.1432 2964.4544 2558.5456
B6.A-Chr7 both 3481.5 103.1432 3684.4544 3278.5456
B6.A-Chr8 both 3117.3125 103.1432 3320.2669 2914.3581
B6.A-Chr9 both 3316.5 103.1432 3519.4544 3113.5456
B6.A-ChrX both 3124.9375 103.1432 3327.8919 2921.9831
C57BL/6J both 3363.5 103.1432 3566.4544 3160.5456




GWAS analysis not available: Strain panel must be either Inbred, HMDP, BXD, BXH, CXB, or AXB/BXA