Phenotype measure:   Mitchell1   habituation

ID, description, units MPD:37617   habituation   change in locomotor activity, day2 minus day1   [cm]
Data set, strains Mitchell1   inbred   15 strains     sex: m     age: 5-7wks
Procedure monitoring system
Ontology mappings


  STRAIN COMPARISON PLOT
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Mitchell1 - change in locomotor activity, day2 minus day1



  MEASURE SUMMARY
Measure Summary Male
Number of strains tested15 strains
Mean of the strain means-485   cm
Median of the strain means-448   cm
SD of the strain means± 917
Coefficient of variation (CV)-1.89
Min–max range of strain means-2486   –   796   cm
Mean sample size per strain6.0   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
strain 14 68909047.1045 4922074.7932 6.106 < 0.0001
Residuals 74 59651311.3 806098.8014


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
Strain Sex Mean SD N mice SEM CV Min, Max Z score
129P3/J m -2486.0 802.0   6 327.0 -0.322 -3400.0, -1371.0 -2.18
A/HeJ m -528.0 389.0   6 159.0 -0.737 -969.0, -58.0 -0.05
AKR/J m -1441.0 1123.0   6 458.0 -0.779 -3506.0, -203.0 -1.04
BALB/cJ m 404.0 609.0   6 249.0 1.51 -199.0, 1220.0 0.97
C3H/HeJ m 681.0 746.0   6 305.0 1.1 -506.0, 1682.0 1.27
C57BL/6J m -1239.0 1269.0   6 518.0 -1.02 -2997.0, -57.0 -0.82
C57L/J m -448.0 617.0   6 252.0 -1.38 -999.0, 753.0 0.04
C58/J m 796.0 1050.0   5 469.0 1.32 -627.0, 2151.0 1.4
CBA/J m -8.83 539.0   6 220.0 -61.0 -741.0, 791.0 0.52
DBA/1J m -214.0 577.0   6 236.0 -2.7 -868.0, 464.0 0.3
DBA/2J m -614.0 1283.0   6 524.0 -2.09 -2252.0, 1015.0 -0.14
NZB/BlNJ m -620.0 1127.0   6 460.0 -1.82 -2112.0, 1232.0 -0.15
PL/J m 168.0 1268.0   6 518.0 7.56 -1490.0, 1983.0 0.71
SJL/J m -18.7 474.0   6 194.0 -25.4 -831.0, 473.0 0.51
SWR/J m -1711.0 839.0   6 342.0 -0.49 -2492.0, -598.0 -1.34


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129P3/J m -2486.0 366.5376 -1755.6579 -3216.3421
A/HeJ m -528.1667 366.5376 202.1754 -1258.5087
AKR/J m -1440.6667 366.5376 -710.3246 -2171.0087
BALB/cJ m 403.8333 366.5376 1134.1754 -326.5087
C3H/HeJ m 681.1667 366.5376 1411.5087 -49.1754
C57BL/6J m -1239.1667 366.5376 -508.8246 -1969.5087
C57L/J m -447.8333 366.5376 282.5087 -1178.1754
C58/J m 796.2 401.5218 1596.2497 -3.8497
CBA/J m -8.8333 366.5376 721.5087 -739.1754
DBA/1J m -214.0 366.5376 516.3421 -944.3421
DBA/2J m -614.1667 366.5376 116.1754 -1344.5087
NZB/BlNJ m -620.3333 366.5376 110.0087 -1350.6754
PL/J m 167.6667 366.5376 898.0087 -562.6754
SJL/J m -18.6667 366.5376 711.6754 -749.0087
SWR/J m -1710.6667 366.5376 -980.3246 -2441.0087




  GENOME-WIDE ASSOCIATION (GWAS) STATIC PLOT
Plot generated with EMMA / pyLMM using 132K SNP array. Click on plot to view at larger size.