Project measure / variable:   Pletcher1   OFT_activity

ID, description, units MPD:36007   OFT_activity   total distance traveled, 10 min test   [cm]  
Data set, strains Pletcher1   inbred   31 strains     sex: m     age: 7-10wks*
Procedure open field test
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  STRAIN COMPARISON PLOT
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Pletcher1 - total distance traveled, 10 min test



  MEASURE SUMMARY
Measure Summary Male
Number of strains tested31 strains
Mean of the strain means1512   cm
Median of the strain means1443   cm
SD of the strain means± 623
Coefficient of variation (CV)0.412
Min–max range of strain means304   –   2788   cm
Mean sample size per strain14.7   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
strain 30 182607554.5664 6086918.4855 23.6596 < 0.0001
Residuals 440 113198953.8868 257270.3497


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ m 304.0 297.0   17 72.1 0.98 29.0, 1038.0 -1.94
A/J m 414.0 634.0   18 149.0 1.53 67.9, 2180.0 -1.76
AKR/J m 1931.0 381.0   17 92.3 0.197 1435.0, 2586.0 0.67
BALB/cJ m 1297.0 849.0   39 136.0 0.655 102.0, 3026.0 -0.34
BTBR T+ Itpr3tf/J m 1613.0 496.0   17 120.0 0.307 898.0, 2864.0 0.16
BUB/BnJ m 1443.0 305.0   10 96.4 0.211 1069.0, 2151.0 -0.11
C3H/HeJ m 1099.0 239.0   11 72.1 0.218 610.0, 1475.0 -0.66
C57BL/6J m 1410.0 323.0   23 67.3 0.229 888.0, 2357.0 -0.16
C57BLKS/J m 1061.0 232.0   15 59.9 0.219 573.0, 1412.0 -0.72
C58/J m 2303.0 1104.0   17 268.0 0.479 940.0, 4503.0 1.27
CBA/J m 1055.0 211.0   15 54.5 0.2 737.0, 1421.0 -0.73
CE/J m 1688.0 371.0   12 107.0 0.22 1155.0, 2493.0 0.28
DBA/2J m 1065.0 439.0   27 84.5 0.412 122.0, 2285.0 -0.72
FVB/NJ m 2035.0 355.0   23 74.0 0.174 1381.0, 2751.0 0.84
I/LnJ m 2156.0 572.0   11 172.0 0.265 1428.0, 3145.0 1.03
LG/J m 1754.0 285.0   11 86.0 0.163 1399.0, 2451.0 0.39
LP/J m 849.0 303.0   11 91.2 0.356 399.0, 1423.0 -1.06
MA/MyJ m 2363.0 325.0   10 103.0 0.137 1834.0, 2755.0 1.37
MRL/MpJ m 1417.0 320.0   11 96.3 0.225 855.0, 1980.0 -0.15
NOD/ShiLtJ m 2788.0 675.0   17 164.0 0.242 1312.0, 3496.0 2.05
NOR/LtJ m 2564.0 665.0   18 157.0 0.259 1459.0, 3980.0 1.69
NZB/BlNJ m 784.0 473.0   14 126.0 0.603 32.8, 1524.0 -1.17
NZO/HlLtJ m 690.0 172.0   10 54.5 0.25 464.0, 966.0 -1.32
NZW/LacJ m 1268.0 361.0   7 137.0 0.285 871.0, 1914.0 -0.39
PERA/EiJ m 1221.0 287.0   6 117.0 0.235 859.0, 1680.0 -0.47
PL/J m 1511.0 222.0   11 66.9 0.147 1201.0, 1813.0 0.0
PWK/PhJ m 1895.0 465.0   11 140.0 0.246 1192.0, 2572.0 0.62
RIIIS/J m 2134.0 459.0   18 108.0 0.215 1578.0, 3423.0 1.0
SJL/J m 1033.0 291.0   11 87.7 0.282 462.0, 1606.0 -0.77
SM/J m 2235.0 392.0   17 95.1 0.176 1364.0, 2930.0 1.16
SWR/J m 1482.0 338.0   16 84.6 0.228 1032.0, 2323.0 -0.05


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ m 303.5471 123.0185 545.3239 61.7702
A/J m 413.6167 119.5525 648.5816 178.6518
AKR/J m 1931.3529 123.0185 2173.1298 1689.5761
BALB/cJ m 1297.4615 81.2199 1457.0887 1137.8343
BTBR T+ Itpr3tf/J m 1613.4118 123.0185 1855.1886 1371.6349
BUB/BnJ m 1442.6 160.3965 1757.8385 1127.3615
C3H/HeJ m 1099.2727 152.9321 1399.8408 798.7046
C57BL/6J m 1409.5217 105.7623 1617.3838 1201.6596
C57BLKS/J m 1061.1333 130.9632 1318.5245 803.7422
C58/J m 2303.4118 123.0185 2545.1886 2061.6349
CBA/J m 1055.0 130.9632 1312.3911 797.6089
CE/J m 1688.0 146.4213 1975.772 1400.228
DBA/2J m 1064.5556 97.6142 1256.4036 872.7075
FVB/NJ m 2035.087 105.7623 2242.9491 1827.2249
I/LnJ m 2156.0 152.9321 2456.5681 1855.4319
LG/J m 1754.2727 152.9321 2054.8408 1453.7046
LP/J m 849.0909 152.9321 1149.659 548.5228
MA/MyJ m 2362.6 160.3965 2677.8385 2047.3615
MRL/MpJ m 1417.4545 152.9321 1718.0226 1116.8865
NOD/ShiLtJ m 2788.2941 123.0185 3030.071 2546.5172
NOR/LtJ m 2564.2778 119.5525 2799.2427 2329.3129
NZB/BlNJ m 784.3786 135.5598 1050.8037 517.9534
NZO/HlLtJ m 689.8 160.3965 1005.0385 374.5615
NZW/LacJ m 1267.5714 191.7105 1644.3535 890.7894
PERA/EiJ m 1221.1667 207.071 1628.1378 814.1955
PL/J m 1511.0 152.9321 1811.5681 1210.4319
PWK/PhJ m 1895.4545 152.9321 2196.0226 1594.8865
RIIIS/J m 2134.0 119.5525 2368.9649 1899.0351
SJL/J m 1032.6364 152.9321 1333.2045 732.0683
SM/J m 2234.6471 123.0185 2476.4239 1992.8702
SWR/J m 1481.5625 126.8046 1730.7804 1232.3446




  GWAS USING LINEAR MIXED MODELS