Phenotype measure:   Pletcher1   OFT_thigmotaxis



  STRAIN COMPARISON PLOT
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Pletcher1 - percent of center avoidance, thigmotaxis, 10 min test



  MEASURE SUMMARY
Measure Summary Male
Number of strains tested31 strains
Mean of the strain means90.2   %
Median of the strain means89.6   %
SD of the strain means± 5.57
Coefficient of variation (CV)0.0618
Min–max range of strain means75.3   –   99.8   %
Mean sample size per strain14.7   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
strain 30 15745.4507 524.8484 18.6017 < 0.0001
Residuals 440 12414.6423 28.2151


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ m 99.8 0.617   17 0.15 0.00619 97.5, 100.0 1.73
A/J m 99.7 1.07   18 0.252 0.0107 95.5, 100.0 1.71
AKR/J m 87.2 7.05   17 1.71 0.0808 71.2, 97.2 -0.53
BALB/cJ m 95.9 4.82   39 0.771 0.0502 79.8, 100.0 1.03
BTBR T+ Itpr3tf/J m 92.9 3.59   17 0.871 0.0386 83.5, 97.8 0.49
BUB/BnJ m 85.8 4.44   10 1.4 0.0517 77.5, 91.3 -0.78
C3H/HeJ m 89.9 5.54   11 1.67 0.0616 76.5, 96.7 -0.05
C57BL/6J m 90.2 4.88   23 1.02 0.0542 79.3, 97.7 0.01
C57BLKS/J m 89.1 4.56   15 1.18 0.0512 80.8, 95.0 -0.19
C58/J m 87.0 8.12   17 1.97 0.0933 73.8, 98.8 -0.57
CBA/J m 89.6 3.13   15 0.808 0.035 83.7, 94.2 -0.1
CE/J m 85.6 6.35   12 1.83 0.0741 77.0, 94.5 -0.82
DBA/2J m 96.0 4.42   27 0.851 0.046 83.3, 100.0 1.05
FVB/NJ m 83.6 3.62   23 0.755 0.0433 75.7, 90.0 -1.18
I/LnJ m 92.6 2.96   11 0.892 0.0319 86.3, 96.0 0.44
LG/J m 88.5 6.94   11 2.09 0.0783 74.2, 97.7 -0.3
LP/J m 97.8 2.42   11 0.729 0.0247 93.3, 100.0 1.37
MA/MyJ m 88.2 4.55   10 1.44 0.0515 78.5, 96.2 -0.35
MRL/MpJ m 86.9 8.34   11 2.51 0.096 74.3, 100.0 -0.58
NOD/ShiLtJ m 75.3 7.46   17 1.81 0.0991 62.0, 89.0 -2.66
NOR/LtJ m 81.5 11.2   18 2.65 0.138 52.2, 93.2 -1.55
NZB/BlNJ m 99.0 1.09   14 0.292 0.011 95.8, 100.0 1.59
NZO/HlLtJ m 96.9 2.59   10 0.818 0.0267 92.8, 100.0 1.21
NZW/LacJ m 87.0 6.59   7 2.49 0.0757 80.3, 97.5 -0.57
PERA/EiJ m 90.0 9.59   6 3.91 0.107 73.7, 97.5 -0.03
PL/J m 90.5 3.38   11 1.02 0.0374 83.2, 94.2 0.06
PWK/PhJ m 93.3 2.97   11 0.895 0.0318 88.5, 96.2 0.56
RIIIS/J m 87.3 3.81   18 0.898 0.0436 82.7, 96.2 -0.51
SJL/J m 94.2 6.08   11 1.83 0.0646 78.3, 98.8 0.73
SM/J m 87.5 4.92   17 1.19 0.0562 74.7, 96.2 -0.48
SWR/J m 85.9 3.88   16 0.971 0.0452 76.7, 90.0 -0.76


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ m 99.8 1.2883 102.332 97.268
A/J m 99.65 1.252 102.1106 97.1894
AKR/J m 87.1647 1.2883 89.6967 84.6327
BALB/cJ m 95.9 0.8506 97.5717 94.2283
BTBR T+ Itpr3tf/J m 92.9176 1.2883 95.4496 90.3857
BUB/BnJ m 85.85 1.6797 89.1513 82.5487
C3H/HeJ m 89.9273 1.6016 93.0749 86.7796
C57BL/6J m 90.1522 1.1076 92.329 87.9754
C57BLKS/J m 89.0533 1.3715 91.7488 86.3578
C58/J m 87.0294 1.2883 89.5614 84.4974
CBA/J m 89.5667 1.3715 92.2622 86.8712
CE/J m 85.6417 1.5334 88.6553 82.628
DBA/2J m 96.0185 1.0223 98.0276 94.0094
FVB/NJ m 83.6174 1.1076 85.7942 81.4406
I/LnJ m 92.6455 1.6016 95.7931 89.4978
LG/J m 88.5455 1.6016 91.6931 85.3978
LP/J m 97.7909 1.6016 100.9386 94.6432
MA/MyJ m 88.24 1.6797 91.5413 84.9387
MRL/MpJ m 86.8818 1.6016 90.0295 83.7342
NOD/ShiLtJ m 75.3059 1.2883 77.8379 72.7739
NOR/LtJ m 81.5278 1.252 83.9884 79.0671
NZB/BlNJ m 99.05 1.4196 101.8401 96.2599
NZO/HlLtJ m 96.85 1.6797 100.1513 93.5487
NZW/LacJ m 87.0286 2.0077 90.9744 83.0828
PERA/EiJ m 89.95 2.1685 94.212 85.688
PL/J m 90.5182 1.6016 93.6658 87.3705
PWK/PhJ m 93.2818 1.6016 96.4295 90.1342
RIIIS/J m 87.2556 1.252 89.7162 84.7949
SJL/J m 94.1909 1.6016 97.3386 91.0432
SM/J m 87.4588 1.2883 89.9908 84.9268
SWR/J m 85.8688 1.3279 88.4787 83.2588




  GENOME-WIDE ASSOCIATION (GWAS) VIEW
Plot generated with pyLMM using 132K SNP array. Click on plot to view at larger size.