Phenotype measure:   Pletcher1   TST

ID, description, units MPD:36001   TST   TST immobility percentage   [%]
Data set, strains Pletcher1   inbred   30 strains     sex: m     age: 7-10wks*
Procedure tail suspension test
Ontology mappings


  STRAIN COMPARISON PLOT
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Pletcher1 - TST immobility percentage



  MEASURE SUMMARY
Measure Summary Male
Number of strains tested30 strains
Mean of the strain means34.4   %
Median of the strain means34.2   %
SD of the strain means± 16.5
Coefficient of variation (CV)0.479
Min–max range of strain means7.50   –   62.6   %
Mean sample size per strain15.7   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
strain 29 114654.7096 3953.6107 28.7949 < 0.0001
Residuals 456 62609.8159 137.3022


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ m 33.4 15.2   31 2.73 0.455 6.1, 67.4 -0.06
A/J m 36.3 8.94   28 1.69 0.246 22.2, 57.6 0.12
AKR/J m 56.1 10.1   18 2.39 0.181 38.7, 73.8 1.32
BALB/cJ m 33.6 18.4   37 3.02 0.547 1.8, 71.8 -0.05
BTBR T+ Itpr3tf/J m 13.5 9.55   18 2.25 0.708 0.2, 38.4 -1.27
BUB/BnJ m 44.8 9.95   11 3.0 0.222 26.0, 59.4 0.63
C3H/HeJ m 24.0 15.7   12 4.54 0.655 8.2, 66.1 -0.63
C57BL/6J m 58.7 11.8   19 2.7 0.201 36.6, 79.5 1.48
C57BLKS/J m 37.7 10.1   17 2.44 0.267 20.5, 57.4 0.2
C57BR/cdJ m 34.9 16.0   5 7.17 0.459 13.9, 51.7 0.03
C58/J m 27.1 11.4   15 2.95 0.421 2.8, 39.2 -0.44
CBA/J m 32.8 9.41   18 2.22 0.287 17.3, 50.0 -0.1
CE/J m 25.0 16.0   11 4.82 0.64 3.5, 49.4 -0.57
DBA/2J m 17.2 9.13   42 1.41 0.531 0.2, 42.4 -1.04
FVB/NJ m 12.6 9.92   23 2.07 0.788 1.1, 35.8 -1.32
I/LnJ m 62.6 6.16   8 2.18 0.0984 51.8, 71.7 1.71
LG/J m 8.75 9.02   11 2.72 1.03 0.7, 29.8 -1.56
LP/J m 52.6 12.5   8 4.41 0.237 27.7, 68.9 1.11
MA/MyJ m 38.5 13.7   7 5.19 0.356 21.9, 64.9 0.25
MRL/MpJ m 15.6 3.74   11 1.13 0.239 10.4, 23.1 -1.14
NOD/ShiLtJ m 44.5 10.5   17 2.54 0.236 18.2, 55.6 0.61
NOR/LtJ m 31.8 15.9   12 4.59 0.501 12.0, 55.5 -0.16
NZB/BlNJ m 48.3 11.2   15 2.88 0.231 30.4, 72.1 0.84
NZO/HlLtJ m 8.89 6.57   9 2.19 0.739 0.1, 17.9 -1.55
NZW/LacJ m 46.2 11.8   8 4.18 0.256 28.4, 64.4 0.72
PL/J m 58.2 6.18   11 1.86 0.106 49.2, 64.9 1.45
RIIIS/J m 7.5 8.15   17 1.98 1.09 0.1, 25.8 -1.63
SJL/J m 39.6 11.0   12 3.17 0.277 21.9, 59.6 0.32
SM/J m 57.5 12.2   14 3.25 0.211 36.1, 73.1 1.4
SWR/J m 23.5 9.99   21 2.18 0.424 6.4, 40.6 -0.66


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ m 33.4161 2.1045 37.5519 29.2803
A/J m 36.2571 2.2144 40.6089 31.9054
AKR/J m 56.05 2.7619 61.4776 50.6224
BALB/cJ m 33.5946 1.9264 37.3802 29.8089
BTBR T+ Itpr3tf/J m 13.4944 2.7619 18.922 8.0669
BUB/BnJ m 44.7909 3.533 51.7339 37.8479
C3H/HeJ m 24.0167 3.3826 30.664 17.3693
C57BL/6J m 58.6632 2.6882 63.946 53.3804
C57BLKS/J m 37.6706 2.8419 43.2555 32.0857
C57BR/cdJ m 34.92 5.2403 45.2181 24.6219
C58/J m 27.1 3.0255 33.0456 21.1544
CBA/J m 32.8222 2.7619 38.2498 27.3947
CE/J m 25.0091 3.533 31.9521 18.0661
DBA/2J m 17.2143 1.8081 20.7675 13.6611
FVB/NJ m 12.5913 2.4433 17.3928 7.7898
I/LnJ m 62.5625 4.1428 70.7038 54.4212
LG/J m 8.7545 3.533 15.6975 1.8116
LP/J m 52.6 4.1428 60.7413 44.4587
MA/MyJ m 38.5429 4.4288 47.2463 29.8394
MRL/MpJ m 15.6182 3.533 22.5611 8.6752
NOD/ShiLtJ m 44.4941 2.8419 50.079 38.9092
NOR/LtJ m 31.775 3.3826 38.4224 25.1276
NZB/BlNJ m 48.26 3.0255 54.2056 42.3144
NZO/HlLtJ m 8.8889 3.9059 16.5646 1.2132
NZW/LacJ m 46.225 4.1428 54.3663 38.0837
PL/J m 58.1818 3.533 65.1248 51.2389
RIIIS/J m 7.5 2.8419 13.0849 1.9151
SJL/J m 39.5833 3.3826 46.2307 32.936
SM/J m 57.55 3.1317 63.7043 51.3957
SWR/J m 23.5381 2.557 28.563 18.5131




  GENOME-WIDE ASSOCIATION (GWAS) STATIC PLOT
Plot generated with EMMA / pyLMM using 132K SNP array. Click on plot to view at larger size.