Project measure / variable:   Lightfoot1   activity_duration

ID, description, units MPD:35702   activity_duration   wheel running activity, mean duration   [min/d]  
Data set, strains Lightfoot1   inbred   41 strains     sex: both     age: 8-16wks
Procedure running wheel monitoring
Ontology mappings

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  STRAIN COMPARISON PLOT
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Lightfoot1 - wheel running activity, mean duration

C58/JNON/ShiLtJC57L/JCBA/JC57BR/cdJC3HeB/FeJNOD/ShiLtJA/JSM/JBALB/cByJSWR/JRIIIS/J129X1/SvJMRL/MpJPWD/PhJLG/JBALB/cJKK/HlJC57BL/6JMOLF/EiJI/LnJSPRET/EiJDBA/2JCAST/EiJAKR/JFVB/NJC57BL/10JDBA/1JBUB/BnJCE/JPL/JC3H/HeJLP/JBTBR T<+> Itpr3<tf>/JNZB/BlNJC57BLKS/JWSB/EiJSJL/JNZW/LacJ129T2/SvEmsJ129S1/SvImJ min/d 0100200300400500600700femalemale


  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested41 strains41 strains
Mean of the strain means223   min/d 199   min/d
Median of the strain means234   min/d 213   min/d
SD of the strain means± 118 ± 113
Coefficient of variation (CV)0.527 0.567
Min–max range of strain means26.9   –   613   min/d 3.34   –   548   min/d
Mean sample size per strain4.7   mice 5.1   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 75580.7431 75580.7431 13.6193 0.0003
strain 40 4175868.1955 104396.7049 18.8118 < 0.0001
sex:strain 40 715632.8434 17890.8211 3.2238 < 0.0001
Residuals 366 2031132.1102 5549.5413


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
Select table page: 1 - 10 / 82 (82)
Strain
Sex
Mean
SD
N mice
SEM
CV
Min, Max
Z score
129S1/SvImJ f 40.5 31.2   5 13.9 0.769 6.86, 77.7 -1.55
129S1/SvImJ m 8.78 16.8   5 7.51 1.91 0.14, 38.6 -1.69
129T2/SvEmsJ f 73.4 99.6   3 57.5 1.36 1.14, 187.0 -1.28
129T2/SvEmsJ m 42.1 45.7   3 26.4 1.09 2.81, 92.2 -1.39
129X1/SvJ f 335.0 66.4   3 38.4 0.198 273.0, 405.0 0.95
129X1/SvJ m 179.0 26.9   3 15.5 0.15 148.0, 196.0 -0.18
A/J f 237.0 146.0   4 72.9 0.616 25.3, 359.0 0.12
A/J m 347.0 52.4   5 23.4 0.151 303.0, 426.0 1.31
AKR/J f 172.0 18.5   5 8.28 0.108 150.0, 196.0 -0.44
AKR/J m 187.0 38.2   5 17.1 0.204 146.0, 246.0 -0.11
BALB/cByJ f 344.0 11.4   3 6.56 0.033 336.0, 357.0 1.03
BALB/cByJ m 200.0 148.0   3 85.6 0.74 42.2, 336.0 0.01
BALB/cJ f 234.0 60.7   15 15.7 0.259 88.6, 313.0 0.09
BALB/cJ m 273.0 106.0   14 28.4 0.389 128.0, 421.0 0.65
BTBR T+ Itpr3tf/J f 26.9 37.7   3 21.7 1.4 1.1, 70.1 -1.67
BTBR T+ Itpr3tf/J m 222.0 42.5   3 24.6 0.191 181.0, 266.0 0.2
BUB/BnJ f 197.0 173.0   3 100.0 0.879 47.9, 387.0 -0.22
BUB/BnJ m 125.0 130.0   3 74.8 1.04 37.4, 274.0 -0.66
C3HeB/FeJ f 323.0 77.2   5 34.5 0.239 231.0, 425.0 0.85
C3HeB/FeJ m 282.0 44.5   5 19.9 0.158 234.0, 331.0 0.73
C3H/HeJ f 220.0 73.3   5 32.8 0.334 96.0, 284.0 -0.03
C3H/HeJ m 44.3 73.0   23 15.2 1.65 2.79, 279.0 -1.37
C57BL/10J f 205.0 80.1   5 35.8 0.392 89.6, 311.0 -0.16
C57BL/10J m 147.0 74.9   5 33.5 0.509 38.9, 233.0 -0.46
C57BL/6J f 258.0 69.0   28 13.0 0.267 88.4, 381.0 0.3
C57BL/6J m 213.0 65.9   36 11.0 0.31 109.0, 350.0 0.12
C57BLKS/J f 131.0 71.0   5 31.7 0.542 13.3, 193.0 -0.79
C57BLKS/J m 52.0 73.1   5 32.7 1.4 -1.3
C57BR/cdJ f 369.0 81.0   3 46.8 0.22 278.0, 434.0 1.24
C57BR/cdJ m 249.0 131.0   3 75.7 0.527 97.4, 327.0 0.44
C57L/J f 376.0 79.2   11 23.9 0.211 265.0, 453.0 1.3
C57L/J m 334.0 40.3   16 10.1 0.121 266.0, 392.0 1.2
C58/J f 613.0 76.1   3 44.0 0.124 529.0, 677.0 3.31
C58/J m 548.0 58.7   3 33.9 0.107 480.0, 585.0 3.09
CAST/EiJ f 212.0 116.0   10 36.8 0.549 16.3, 358.0 -0.1
CAST/EiJ m 160.0 92.4   10 29.2 0.578 41.4, 368.0 -0.35
CBA/J f 297.0 40.7   5 18.2 0.137 238.0, 341.0 0.63
CBA/J m 388.0 30.0   5 13.4 0.0774 350.0, 412.0 1.67
CE/J f 180.0 51.2   5 22.9 0.284 114.0, 238.0 -0.37
CE/J m 98.0 34.4   5 15.4 0.351 57.4, 137.0 -0.9
DBA/1J f 155.0 53.7   3 31.0 0.347 94.7, 198.0 -0.58
DBA/1J m 191.0 68.0   3 39.3 0.356 144.0, 269.0 -0.07
DBA/2J f 144.0 28.5   5 12.7 0.197 104.0, 177.0 -0.67
DBA/2J m 233.0 50.3   5 22.5 0.216 152.0, 277.0 0.3
FVB/NJ f 148.0 61.1   3 35.3 0.414 108.0, 218.0 -0.64
FVB/NJ m 210.0 78.4   3 45.2 0.374 136.0, 292.0 0.1
I/LnJ f 241.0 32.7   3 18.9 0.136 210.0, 275.0 0.15
I/LnJ m 168.0 0.0   2   0.0 0.0 168.0, 168.0 -0.28
KK/HlJ f 236.0 102.0   3 59.0 0.434 138.0, 342.0 0.11
KK/HlJ m 236.0 47.5   3 27.4 0.201 188.0, 283.0 0.33
LG/J f 389.0 57.0   3 32.9 0.147 331.0, 445.0 1.41
LG/J m 120.0 61.5   3 35.5 0.511 51.9, 171.0 -0.7
LP/J f 33.7 56.7   5 25.3 1.68 0.14, 134.0 -1.61
LP/J m 224.0 78.9   5 35.3 0.352 124.0, 310.0 0.22
MOLF/EiJ f 236.0 26.2   2   18.5 0.111 218.0, 255.0 0.11
MOLF/EiJ m 218.0 0.707   2   0.5 0.00324 218.0, 219.0 0.17
MRL/MpJ f 256.0 103.0   5 46.1 0.402 78.8, 348.0 0.28
MRL/MpJ m 257.0 26.8   4 13.4 0.104 224.0, 281.0 0.51
NOD/ShiLtJ f 288.0 202.0   3 117.0 0.702 68.7, 467.0 0.55
NOD/ShiLtJ m 309.0 19.4   3 11.2 0.0628 288.0, 326.0 0.97
NON/ShiLtJ f 407.0 21.9   3 12.7 0.0539 382.0, 423.0 1.56
NON/ShiLtJ m 319.0 39.5   3 22.8 0.124 289.0, 364.0 1.06
NZB/BlNJ f 88.6 34.3   10 10.9 0.388 39.6, 144.0 -1.15
NZB/BlNJ m 113.0 53.4   5 23.9 0.471 35.9, 174.0 -0.76
NZW/LacJ f 81.7 36.9   3 21.3 0.452 52.0, 123.0 -1.2
NZW/LacJ m 37.9 32.7   3 18.9 0.863 0.48, 61.1 -1.43
PL/J f 128.0 84.6   5 37.9 0.662 28.1, 227.0 -0.81
PL/J m 149.0 73.9   5 33.1 0.497 55.9, 247.0 -0.44
PWD/PhJ f 282.0 63.0   3 36.4 0.223 215.0, 340.0 0.5
PWD/PhJ m 230.0 49.9   3 28.8 0.217 173.0, 266.0 0.27
RIIIS/J f 261.0 52.4   3 30.2 0.201 204.0, 307.0 0.32
RIIIS/J m 260.0 3.79   3 2.19 0.0146 257.0, 264.0 0.54
SJL/J f 116.0 161.0   3 92.8 1.38 1.67, 300.0 -0.91
SJL/J m 4.51 2.94   3 1.7 0.652 1.71, 7.57 -1.72
SM/J f 290.0 29.6   5 13.2 0.102 248.0, 315.0 0.57
SM/J m 269.0 126.0   5 56.2 0.468 55.9, 376.0 0.62
SPRET/EiJ f 156.0 180.0   5 80.6 1.15 17.1, 428.0 -0.57
SPRET/EiJ m 245.0 64.3   5 28.7 0.262 153.0, 328.0 0.41
SWR/J f 255.0 64.1   5 28.7 0.252 147.0, 302.0 0.27
SWR/J m 268.0 49.6   5 22.2 0.185 186.0, 316.0 0.61
WSB/EiJ f 120.0 35.2   3 20.3 0.294 82.9, 153.0 -0.88
WSB/EiJ m 3.34 3.91   3 2.25 1.17 0.22, 7.72 -1.74


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ f 40.512 33.3153 106.0254 0.0
129S1/SvImJ m 8.776 33.3153 74.2894 0.0
129T2/SvEmsJ f 73.4467 43.0098 158.0241 0.0
129T2/SvEmsJ m 42.07 43.0098 126.6474 0.0
129X1/SvJ f 334.6667 43.0098 419.2441 250.0892
129X1/SvJ m 179.0 43.0098 263.5774 94.4226
A/J f 236.575 37.2476 309.8212 163.3288
A/J m 347.2 33.3153 412.7134 281.6866
AKR/J f 172.2 33.3153 237.7134 106.6866
AKR/J m 187.4 33.3153 252.9134 121.8866
BALB/cByJ f 344.0 43.0098 428.5774 259.4226
BALB/cByJ m 200.4 43.0098 284.9774 115.8226
BALB/cJ f 234.24 19.2346 272.0642 196.4158
BALB/cJ m 273.2857 19.9097 312.4375 234.134
BTBR T+ Itpr3tf/J f 26.8933 43.0098 111.4708 0.0
BTBR T+ Itpr3tf/J m 222.3333 43.0098 306.9108 137.7559
BUB/BnJ f 196.9667 43.0098 281.5441 112.3892
BUB/BnJ m 125.1 43.0098 209.6774 40.5226
C3HeB/FeJ f 322.6 33.3153 388.1134 257.0866
C3HeB/FeJ m 281.8 33.3153 347.3134 216.2866
C3H/HeJ f 219.6 33.3153 285.1134 154.0866
C3H/HeJ m 44.2887 15.5333 74.8345 13.7429
C57BL/10J f 204.52 33.3153 270.0334 139.0066
C57BL/10J m 146.98 33.3153 212.4934 81.4666
C57BL/6J f 258.4786 14.0783 286.163 230.7941
C57BL/6J m 212.6667 12.4159 237.0821 188.2513
C57BLKS/J f 131.06 33.3153 196.5734 65.5466
C57BLKS/J m 52.026 33.3153 117.5394 0.0
C57BR/cdJ f 368.6667 43.0098 453.2441 284.0892
C57BR/cdJ m 248.8 43.0098 333.3774 164.2226
C57L/J f 376.0909 22.4612 420.26 331.9218
C57L/J m 333.6875 18.6238 370.3106 297.0644
C58/J f 613.3333 43.0098 697.9108 528.7559
C58/J m 547.6667 43.0098 632.2441 463.0892
CAST/EiJ f 212.13 23.5575 258.455 165.805
CAST/EiJ m 159.93 23.5575 206.255 113.605
CBA/J f 296.6 33.3153 362.1134 231.0866
CBA/J m 387.6 33.3153 453.1134 322.0866
CE/J f 180.4 33.3153 245.9134 114.8866
CE/J m 97.96 33.3153 163.4734 32.4466
DBA/1J f 154.9 43.0098 239.4774 70.3226
DBA/1J m 191.0 43.0098 275.5774 106.4226
DBA/2J f 144.4 33.3153 209.9134 78.8866
DBA/2J m 233.0 33.3153 298.5134 167.4866
FVB/NJ f 147.6667 43.0098 232.2441 63.0892
FVB/NJ m 209.6667 43.0098 294.2441 125.0892
I/LnJ f 240.6667 43.0098 325.2441 156.0892
I/LnJ m 168.0 52.6761 271.5858 64.4142
KK/HlJ f 235.6667 43.0098 320.2441 151.0892
KK/HlJ m 236.3333 43.0098 320.9108 151.7559
LG/J f 389.3333 43.0098 473.9108 304.7559
LG/J m 120.3 43.0098 204.8774 35.7226
LP/J f 33.654 33.3153 99.1674 0.0
LP/J m 224.2 33.3153 289.7134 158.6866
MOLF/EiJ f 236.5 52.6761 340.0858 132.9142
MOLF/EiJ m 218.5 52.6761 322.0858 114.9142
MRL/MpJ f 256.36 33.3153 321.8734 190.8466
MRL/MpJ m 256.75 37.2476 329.9962 183.5038
NOD/ShiLtJ f 288.2333 43.0098 372.8108 203.6559
NOD/ShiLtJ m 309.3333 43.0098 393.9108 224.7559
NON/ShiLtJ f 407.0 43.0098 491.5774 322.4226
NON/ShiLtJ m 319.3333 43.0098 403.9108 234.7559
NZB/BlNJ f 88.61 23.5575 134.935 42.285
NZB/BlNJ m 113.3 33.3153 178.8134 47.7866
NZW/LacJ f 81.6667 43.0098 166.2441 0.0
NZW/LacJ m 37.8933 43.0098 122.4708 0.0
PL/J f 127.88 33.3153 193.3934 62.3666
PL/J m 148.86 33.3153 214.3734 83.3466
PWD/PhJ f 282.0 43.0098 366.5774 197.4226
PWD/PhJ m 230.0 43.0098 314.5774 145.4226
RIIIS/J f 261.0 43.0098 345.5774 176.4226
RIIIS/J m 259.6667 43.0098 344.2441 175.0892
SJL/J f 116.3233 43.0098 200.9008 31.7459
SJL/J m 4.5067 43.0098 89.0841 0.0
SM/J f 289.6 33.3153 355.1134 224.0866
SM/J m 268.58 33.3153 334.0934 203.0666
SPRET/EiJ f 156.28 33.3153 221.7934 90.7666
SPRET/EiJ m 245.2 33.3153 310.7134 179.6866
SWR/J f 254.6 33.3153 320.1134 189.0866
SWR/J m 267.8 33.3153 333.3134 202.2866
WSB/EiJ f 119.9667 43.0098 204.5441 35.3892
WSB/EiJ m 3.34 43.0098 87.9174 0.0


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ both 24.644 23.5575 70.969 0.0
129T2/SvEmsJ both 57.7583 30.4126 117.5636 0.0
129X1/SvJ both 256.8333 30.4126 316.6386 197.0281
A/J both 291.8875 24.9865 341.0226 242.7524
AKR/J both 179.8 23.5575 226.125 133.475
BALB/cByJ both 272.2 30.4126 332.0053 212.3947
BALB/cJ both 253.7629 13.8417 280.982 226.5437
BTBR T+ Itpr3tf/J both 124.6133 30.4126 184.4186 64.8081
BUB/BnJ both 161.0333 30.4126 220.8386 101.2281
C3HeB/FeJ both 302.2 23.5575 348.525 255.875
C3H/HeJ both 131.9443 18.3793 168.0866 95.8021
C57BL/10J both 175.75 23.5575 222.075 129.425
C57BL/6J both 235.5726 9.3855 254.0289 217.1163
C57BLKS/J both 91.543 23.5575 137.868 45.218
C57BR/cdJ both 308.7333 30.4126 368.5386 248.9281
C57L/J both 354.8892 14.589 383.5779 326.2005
C58/J both 580.5 30.4126 640.3053 520.6947
CAST/EiJ both 186.03 16.6576 218.7867 153.2733
CBA/J both 342.1 23.5575 388.425 295.775
CE/J both 139.18 23.5575 185.505 92.855
DBA/1J both 172.95 30.4126 232.7553 113.1447
DBA/2J both 188.7 23.5575 235.025 142.375
FVB/NJ both 178.6667 30.4126 238.4719 118.8614
I/LnJ both 204.3333 34.0023 271.1977 137.469
KK/HlJ both 236.0 30.4126 295.8053 176.1947
LG/J both 254.8167 30.4126 314.6219 195.0114
LP/J both 128.927 23.5575 175.252 82.602
MOLF/EiJ both 227.5 37.2476 300.7462 154.2538
MRL/MpJ both 256.555 24.9865 305.6901 207.4199
NOD/ShiLtJ both 298.7833 30.4126 358.5886 238.9781
NON/ShiLtJ both 363.1667 30.4126 422.9719 303.3614
NZB/BlNJ both 100.955 20.4014 141.0736 60.8364
NZW/LacJ both 59.78 30.4126 119.5853 0.0
PL/J both 138.37 23.5575 184.695 92.045
PWD/PhJ both 256.0 30.4126 315.8053 196.1947
RIIIS/J both 260.3333 30.4126 320.1386 200.5281
SJL/J both 60.415 30.4126 120.2203 0.6097
SM/J both 279.09 23.5575 325.415 232.765
SPRET/EiJ both 200.74 23.5575 247.065 154.415
SWR/J both 261.2 23.5575 307.525 214.875
WSB/EiJ both 61.6533 30.4126 121.4586 1.8481




  GWAS USING LINEAR MIXED MODELS

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