Phenotype measure

ID, description, units MPD:27406   pct_fat   percent of tissue mass that is fat, head excluded   [%]
Data set, strains Svenson4   B6.PWD consomic w/par   28 strains     sex: both     age: 16wks
Procedure DXA
Ontology mappings


  STRAIN COMPARISON PLOT
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Svenson4 - percent of tissue mass that is fat, head excluded



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested28 strains28 strains
Mean of the strain means20.2   % 19.6   %
Median of the strain means19.8   % 19.6   %
SD of the strain means± 2.18 ± 1.80
Coefficient of variation (CV)0.108 0.0916
Min–max range of strain means17.7   –   27.9   % 16.2   –   23.8   %
Mean sample size per strain9.9   mice 9.3   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 42.5863 42.5863 6.7959 0.0094
strain 27 1088.0355 40.2976 6.4307 < 0.0001
sex:strain 27 987.9025 36.589 5.8388 < 0.0001
Residuals 497 3114.4414 6.2665


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
Strain Sex Mean SD N mice SEM CV Min, Max Z score
B6.PWD-Chr1 f 19.2 1.59   8 0.563 0.0831 17.1, 21.7 -0.44
B6.PWD-Chr1 m 20.9 1.27   8 0.45 0.0608 19.1, 22.8 0.7
B6.PWD-Chr10.1 f 27.9 7.0   12 2.02 0.25 20.1, 38.6 3.55
B6.PWD-Chr10.1 m 17.6 4.2   10 1.33 0.239 12.7, 23.9 -1.13
B6.PWD-Chr10.2 f 19.8 2.07   14 0.553 0.105 16.4, 22.4 -0.17
B6.PWD-Chr10.2 m 18.6 3.0   13 0.832 0.162 15.1, 26.1 -0.57
B6.PWD-Chr10.3 f 18.1 1.27   9 0.425 0.0704 15.9, 19.9 -0.95
B6.PWD-Chr10.3 m 18.9 2.47   8 0.875 0.131 16.4, 23.5 -0.41
B6.PWD-Chr11.1 f 19.4 0.968   9 0.323 0.0499 17.7, 21.1 -0.35
B6.PWD-Chr11.1 m 18.1 1.08   8 0.381 0.0596 16.9, 20.3 -0.85
B6.PWD-Chr11.2 f 18.9 1.58   11 0.478 0.084 17.1, 22.1 -0.58
B6.PWD-Chr11.2 m 17.2 0.792   12 0.229 0.0459 16.0, 18.8 -1.35
B6.PWD-Chr11.3 f 18.5 1.33   11 0.4 0.0718 16.4, 20.2 -0.76
B6.PWD-Chr11.3 m 23.8 3.13   8 1.11 0.132 19.9, 29.7 2.32
B6.PWD-Chr12 f 18.9 1.27   8 0.45 0.0673 17.4, 21.0 -0.58
B6.PWD-Chr12 m 20.5 2.2   8 0.779 0.107 17.0, 22.9 0.48
B6.PWD-Chr13 f 24.3 3.76   8 1.33 0.155 19.1, 29.4 1.9
B6.PWD-Chr13 m 23.0 3.4   8 1.2 0.148 19.1, 30.7 1.87
B6.PWD-Chr14 f 18.4 1.04   8 0.366 0.0562 16.9, 20.0 -0.81
B6.PWD-Chr14 m 18.8 2.24   8 0.793 0.119 15.3, 21.9 -0.46
B6.PWD-Chr15 f 20.3 1.24   8 0.437 0.0611 18.2, 22.4 0.06
B6.PWD-Chr15 m 16.6 1.86   8 0.656 0.112 13.6, 19.0 -1.69
B6.PWD-Chr16 f 21.1 3.34   8 1.18 0.159 17.5, 25.6 0.43
B6.PWD-Chr16 m 19.1 2.11   8 0.745 0.11 15.3, 21.8 -0.3
B6.PWD-Chr17 f 17.7 1.97   9 0.657 0.112 14.2, 20.4 -1.13
B6.PWD-Chr17 m 16.2 3.06   10 0.967 0.188 11.8, 22.9 -1.91
B6.PWD-Chr18 f 20.2 1.38   9 0.461 0.0686 18.7, 22.6 0.02
B6.PWD-Chr18 m 21.2 1.69   8 0.599 0.0798 19.4, 23.8 0.87
B6.PWD-Chr19 f 18.7 0.948   8 0.335 0.0508 17.0, 19.6 -0.67
B6.PWD-Chr19 m 19.8 1.56   8 0.551 0.0786 17.8, 22.1 0.09
B6.PWD-Chr2 f 18.4 2.25   9 0.748 0.122 14.9, 21.9 -0.81
B6.PWD-Chr2 m 17.8 3.12   10 0.988 0.176 13.4, 23.1 -1.02
B6.PWD-Chr3 f 19.8 1.12   8 0.396 0.0564 18.7, 22.2 -0.17
B6.PWD-Chr3 m 18.9 0.362   8 0.128 0.0192 18.4, 19.6 -0.41
B6.PWD-Chr5 f 18.4 1.45   10 0.459 0.0791 16.3, 20.9 -0.81
B6.PWD-Chr5 m 22.5 3.62   14 0.968 0.161 16.7, 26.9 1.59
B6.PWD-Chr6 f 20.6 2.09   10 0.66 0.101 16.9, 24.1 0.2
B6.PWD-Chr6 m 20.3 1.5   8 0.529 0.0736 18.5, 22.7 0.37
B6.PWD-Chr8 f 24.3 3.91   4 1.96 0.161 20.3, 29.5 1.9
B6.PWD-Chr8 m 21.2 2.59   5 1.16 0.122 16.6, 22.9 0.87
B6.PWD-Chr9 f 20.8 1.16   8 0.409 0.0556 19.0, 22.1 0.29
B6.PWD-Chr9 m 19.6 1.34   8 0.475 0.0685 18.4, 22.3 -0.02
B6.PWD-ChrX.1 f 19.7 0.979   8 0.346 0.0498 18.6, 21.4 -0.21
B6.PWD-ChrX.1 m 18.7 2.19   8 0.776 0.117 16.4, 23.2 -0.52
B6.PWD-ChrX.2 f 21.1 3.14   13 0.872 0.149 16.4, 27.1 0.43
B6.PWD-ChrX.2 m 20.3 3.81   9 1.27 0.188 15.4, 25.9 0.37
B6.PWD-ChrX.3 f 20.6 2.78   17 0.675 0.135 17.0, 27.5 0.2
B6.PWD-ChrX.3 m 19.9 3.27   8 1.16 0.164 15.9, 25.7 0.15
B6.PWD-ChrY f 20.1 2.91   8 1.03 0.145 17.5, 26.2 -0.03
B6.PWD-ChrY m 20.7 3.34   8 1.18 0.162 16.7, 25.4 0.59
B6.PWD-mt f 19.2 1.2   8 0.423 0.0624 17.4, 20.6 -0.44
B6.PWD-mt m 19.7 2.85   8 1.01 0.145 16.8, 24.8 0.04
C57BL/6J f 19.5 1.78   19 0.409 0.0917 15.3, 22.5 -0.31
C57BL/6J m 19.6 2.12   19 0.486 0.108 16.3, 25.6 -0.02
PWD/PhJ f 20.7 1.89   23 0.394 0.0912 17.6, 24.1 0.25
PWD/PhJ m 20.2 1.91   22 0.408 0.0948 17.3, 24.2 0.32


  LEAST SQUARES MEANS (ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
B6.PWD-Chr1 f 19.1825 0.885 20.9214 17.4436
B6.PWD-Chr1 m 20.9187 0.885 22.6576 19.1799
B6.PWD-Chr10.1 f 27.9425 0.7226 29.3623 26.5227
B6.PWD-Chr10.1 m 17.576 0.7916 19.1313 16.0207
B6.PWD-Chr10.2 f 19.7743 0.669 21.0888 18.4598
B6.PWD-Chr10.2 m 18.5638 0.6943 19.9279 17.1997
B6.PWD-Chr10.3 f 18.0933 0.8344 19.7328 16.4539
B6.PWD-Chr10.3 m 18.9225 0.885 20.6614 17.1836
B6.PWD-Chr11.1 f 19.3922 0.8344 21.0317 17.7528
B6.PWD-Chr11.1 m 18.0975 0.885 19.8364 16.3586
B6.PWD-Chr11.2 f 18.8509 0.7548 20.3338 17.368
B6.PWD-Chr11.2 m 17.2483 0.7226 18.6681 15.8285
B6.PWD-Chr11.3 f 18.4536 0.7548 19.9366 16.9707
B6.PWD-Chr11.3 m 23.7912 0.885 25.5301 22.0524
B6.PWD-Chr12 f 18.8962 0.885 20.6351 17.1574
B6.PWD-Chr12 m 20.5287 0.885 22.2676 18.7899
B6.PWD-Chr13 f 24.29 0.885 26.0289 22.5511
B6.PWD-Chr13 m 22.9962 0.885 24.7351 21.2574
B6.PWD-Chr14 f 18.4413 0.885 20.1801 16.7024
B6.PWD-Chr14 m 18.84 0.885 20.5789 17.1011
B6.PWD-Chr15 f 20.255 0.885 21.9939 18.5161
B6.PWD-Chr15 m 16.595 0.885 18.3339 14.8561
B6.PWD-Chr16 f 21.0688 0.885 22.8076 19.3299
B6.PWD-Chr16 m 19.1463 0.885 20.8851 17.4074
B6.PWD-Chr17 f 17.6711 0.8344 19.3106 16.0317
B6.PWD-Chr17 m 16.231 0.7916 17.7863 14.6757
B6.PWD-Chr18 f 20.1656 0.8344 21.805 18.5261
B6.PWD-Chr18 m 21.2375 0.885 22.9764 19.4986
B6.PWD-Chr19 f 18.655 0.885 20.3939 16.9161
B6.PWD-Chr19 m 19.8063 0.885 21.5451 18.0674
B6.PWD-Chr2 f 18.3856 0.8344 20.025 16.7461
B6.PWD-Chr2 m 17.766 0.7916 19.3213 16.2107
B6.PWD-Chr3 f 19.84 0.885 21.5789 18.1011
B6.PWD-Chr3 m 18.8938 0.885 20.6326 17.1549
B6.PWD-Chr5 f 18.35 0.7916 19.9053 16.7947
B6.PWD-Chr5 m 22.5279 0.669 23.8423 21.2134
B6.PWD-Chr6 f 20.626 0.7916 22.1813 19.0707
B6.PWD-Chr6 m 20.305 0.885 22.0439 18.5661
B6.PWD-Chr8 f 24.285 1.2516 26.7442 21.8258
B6.PWD-Chr8 m 21.18 1.1195 23.3796 18.9804
B6.PWD-Chr9 f 20.7763 0.885 22.5151 19.0374
B6.PWD-Chr9 m 19.6338 0.885 21.3726 17.8949
B6.PWD-ChrX.1 f 19.6525 0.885 21.3914 17.9136
B6.PWD-ChrX.1 m 18.6837 0.885 20.4226 16.9449
B6.PWD-ChrX.2 f 21.1231 0.6943 22.4872 19.759
B6.PWD-ChrX.2 m 20.2967 0.8344 21.9361 18.6572
B6.PWD-ChrX.3 f 20.6071 0.6071 21.7999 19.4142
B6.PWD-ChrX.3 m 19.8913 0.885 21.6301 18.1524
B6.PWD-ChrY f 20.0625 0.885 21.8014 18.3236
B6.PWD-ChrY m 20.6987 0.885 22.4376 18.9599
B6.PWD-mt f 19.155 0.885 20.8939 17.4161
B6.PWD-mt m 19.6975 0.885 21.4364 17.9586
C57BL/6J f 19.4537 0.5743 20.582 18.3253
C57BL/6J m 19.6337 0.5743 20.762 18.5053
PWD/PhJ f 20.7261 0.522 21.7516 19.7005
PWD/PhJ m 20.1877 0.5337 21.2363 19.1391


  LEAST SQUARES MEANS (ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
B6.PWD-Chr1 both 20.0506 0.6258 21.2802 18.821
B6.PWD-Chr10.1 both 22.7593 0.5359 23.8122 21.7063
B6.PWD-Chr10.2 both 19.1691 0.4821 20.1163 18.2219
B6.PWD-Chr10.3 both 18.5079 0.6082 19.7029 17.313
B6.PWD-Chr11.1 both 18.7449 0.6082 19.9398 17.5499
B6.PWD-Chr11.2 both 18.0496 0.5225 19.0761 17.0231
B6.PWD-Chr11.3 both 21.1224 0.5816 22.2651 19.9798
B6.PWD-Chr12 both 19.7125 0.6258 20.9421 18.4829
B6.PWD-Chr13 both 23.6431 0.6258 24.8727 22.4135
B6.PWD-Chr14 both 18.6406 0.6258 19.8702 17.411
B6.PWD-Chr15 both 18.425 0.6258 19.6546 17.1954
B6.PWD-Chr16 both 20.1075 0.6258 21.3371 18.8779
B6.PWD-Chr17 both 16.9511 0.5751 18.081 15.8211
B6.PWD-Chr18 both 20.7015 0.6082 21.8965 19.5066
B6.PWD-Chr19 both 19.2306 0.6258 20.4602 18.001
B6.PWD-Chr2 both 18.0758 0.5751 19.2057 16.9459
B6.PWD-Chr3 both 19.3669 0.6258 20.5965 18.1373
B6.PWD-Chr5 both 20.4389 0.5182 21.4571 19.4207
B6.PWD-Chr6 both 20.4655 0.5937 21.632 19.299
B6.PWD-Chr8 both 22.7325 0.8396 24.3822 21.0828
B6.PWD-Chr9 both 20.205 0.6258 21.4346 18.9754
B6.PWD-ChrX.1 both 19.1681 0.6258 20.3977 17.9385
B6.PWD-ChrX.2 both 20.7099 0.5428 21.7762 19.6435
B6.PWD-ChrX.3 both 20.2492 0.5366 21.3035 19.1948
B6.PWD-ChrY both 20.3806 0.6258 21.6102 19.151
B6.PWD-mt both 19.4263 0.6258 20.6558 18.1967
C57BL/6J both 19.5437 0.4061 20.3415 18.7458
PWD/PhJ both 20.4569 0.3733 21.1903 19.7235