Phenotype measure:   Svenson4   BMD

ID, description, units MPD:27401   BMD   bone mineral density (BMD)   [g/cm2]
Data set, strains Svenson4   B6.PWD consomic w/par   28 strains     sex: both     age: 16wks
Procedure DXA
Ontology mappings

  STRAIN COMPARISON PLOT
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Svenson4 - bone mineral density (BMD)



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested28 strains28 strains
Mean of the strain means0.0481   g/cm2 0.0480   g/cm2
Median of the strain means0.0480   g/cm2 0.0478   g/cm2
SD of the strain means± 0.00153 ± 0.00127
Coefficient of variation (CV)0.0317 0.0264
Min–max range of strain means0.0449   –   0.0506   g/cm2 0.0458   –   0.0506   g/cm2
Mean sample size per strain9.9   mice 9.3   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 0.0 0.0 1.4208 0.2338
strain 27 0.0007 0.0 9.3395 < 0.0001
sex:strain 27 0.0003 0.0 3.6861 < 0.0001
Residuals 498 0.0015 0.0


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
Select table page:
Strain Sex Mean SD N mice SEM CV Min, Max Z score
B6.PWD-Chr1 f 0.0486 0.00144   8 0.000508 0.0296 0.0456, 0.0499 0.32
B6.PWD-Chr1 m 0.0485 0.000672   8 0.000238 0.0138 0.0472, 0.0494 0.42
B6.PWD-Chr10.1 f 0.0477 0.00199   12 0.000576 0.0418 0.0437, 0.05 -0.27
B6.PWD-Chr10.1 m 0.0506 0.00166   10 0.000526 0.0329 0.0467, 0.0529 2.08
B6.PWD-Chr10.2 f 0.0503 0.00198   14 0.00053 0.0395 0.0473, 0.0535 1.43
B6.PWD-Chr10.2 m 0.0491 0.00205   13 0.000569 0.0417 0.0458, 0.0526 0.89
B6.PWD-Chr10.3 f 0.0477 0.00077   9 0.000257 0.0162 0.0463, 0.0487 -0.27
B6.PWD-Chr10.3 m 0.049 0.0028   8 0.000989 0.0571 0.0451, 0.0538 0.81
B6.PWD-Chr11.1 f 0.0488 0.00128   9 0.000428 0.0263 0.0467, 0.0504 0.45
B6.PWD-Chr11.1 m 0.0488 0.00154   8 0.000545 0.0316 0.0468, 0.0508 0.65
B6.PWD-Chr11.2 f 0.0461 0.00109   11 0.000329 0.0236 0.0434, 0.0474 -1.32
B6.PWD-Chr11.2 m 0.0474 0.00183   12 0.000527 0.0385 0.0437, 0.0495 -0.45
B6.PWD-Chr11.3 f 0.0449 0.00119   11 0.00036 0.0266 0.0434, 0.0469 -2.11
B6.PWD-Chr11.3 m 0.0467 0.000999   8 0.000353 0.0214 0.0452, 0.0482 -1.0
B6.PWD-Chr12 f 0.0483 0.00121   8 0.000427 0.025 0.0468, 0.05 0.12
B6.PWD-Chr12 m 0.0479 0.00135   8 0.000478 0.0282 0.0452, 0.0494 -0.06
B6.PWD-Chr13 f 0.0454 0.0011   8 0.00039 0.0243 0.0439, 0.0477 -1.78
B6.PWD-Chr13 m 0.046 0.00197   8 0.000698 0.0429 0.0426, 0.0485 -1.56
B6.PWD-Chr14 f 0.0492 0.00182   8 0.000643 0.037 0.0468, 0.0521 0.71
B6.PWD-Chr14 m 0.0467 0.00128   8 0.000454 0.0275 0.0449, 0.0493 -1.0
B6.PWD-Chr15 f 0.048 0.00101   8 0.000358 0.0211 0.0471, 0.0497 -0.08
B6.PWD-Chr15 m 0.0474 0.00152   8 0.000536 0.0319 0.0452, 0.0496 -0.45
B6.PWD-Chr16 f 0.0459 0.00116   8 0.000411 0.0254 0.0438, 0.0475 -1.45
B6.PWD-Chr16 m 0.0464 0.00127   8 0.000449 0.0274 0.0444, 0.0485 -1.24
B6.PWD-Chr17 f 0.0478 0.00138   9 0.000459 0.0288 0.0455, 0.0498 -0.21
B6.PWD-Chr17 m 0.0484 0.00236   10 0.000747 0.0488 0.0443, 0.0524 0.34
B6.PWD-Chr18 f 0.0506 0.00159   9 0.000528 0.0313 0.0489, 0.0525 1.63
B6.PWD-Chr18 m 0.0484 0.000783   9 0.000261 0.0162 0.0473, 0.0501 0.34
B6.PWD-Chr19 f 0.0493 0.000766   8 0.000271 0.0155 0.0484, 0.0507 0.77
B6.PWD-Chr19 m 0.0468 0.00159   8 0.000562 0.0339 0.0442, 0.0492 -0.93
B6.PWD-Chr2 f 0.0495 0.00167   9 0.000556 0.0337 0.0464, 0.0514 0.9
B6.PWD-Chr2 m 0.0497 0.00242   10 0.000765 0.0487 0.0455, 0.0535 1.37
B6.PWD-Chr3 f 0.0478 0.00173   8 0.000611 0.0361 0.0459, 0.0505 -0.21
B6.PWD-Chr3 m 0.0471 0.00106   8 0.000374 0.0225 0.0458, 0.0486 -0.69
B6.PWD-Chr5 f 0.0501 0.00216   10 0.000682 0.043 0.0472, 0.0539 1.3
B6.PWD-Chr5 m 0.0487 0.00173   14 0.000463 0.0355 0.0456, 0.0516 0.58
B6.PWD-Chr6 f 0.0483 0.00106   10 0.000334 0.0219 0.0466, 0.0501 0.12
B6.PWD-Chr6 m 0.0476 0.00114   8 0.000404 0.024 0.0462, 0.0491 -0.29
B6.PWD-Chr8 f 0.048 0.00167   4 0.000835 0.0348 0.0457, 0.0495 -0.08
B6.PWD-Chr8 m 0.0493 0.00252   5 0.00113 0.0511 0.0466, 0.0523 1.05
B6.PWD-Chr9 f 0.0455 0.00177   8 0.000626 0.0389 0.0424, 0.0477 -1.71
B6.PWD-Chr9 m 0.0471 0.00168   8 0.000593 0.0356 0.0447, 0.0489 -0.69
B6.PWD-ChrX.1 f 0.0497 0.000982   8 0.000347 0.0198 0.0478, 0.0508 1.04
B6.PWD-ChrX.1 m 0.0487 0.00198   8 0.000702 0.0408 0.0452, 0.0511 0.58
B6.PWD-ChrX.2 f 0.0478 0.00143   13 0.000398 0.03 0.0453, 0.0491 -0.21
B6.PWD-ChrX.2 m 0.0458 0.0019   9 0.000632 0.0414 0.0436, 0.0492 -1.71
B6.PWD-ChrX.3 f 0.048 0.00121   17 0.000294 0.0253 0.0452, 0.0498 -0.08
B6.PWD-ChrX.3 m 0.0501 0.0014   8 0.000495 0.0279 0.0481, 0.052 1.68
B6.PWD-ChrY f 0.0499 0.00123   8 0.000436 0.0247 0.0481, 0.0514 1.17
B6.PWD-ChrY m 0.0495 0.00231   8 0.000816 0.0466 0.0461, 0.053 1.21
B6.PWD-mt f 0.0479 0.00154   8 0.000546 0.0322 0.0463, 0.0505 -0.14
B6.PWD-mt m 0.0469 0.00103   8 0.000365 0.022 0.0453, 0.0481 -0.85
C57BL/6J f 0.0469 0.00256   19 0.000587 0.0546 0.0425, 0.0512 -0.8
C57BL/6J m 0.0473 0.00119   19 0.000272 0.0251 0.0443, 0.0495 -0.53
PWD/PhJ f 0.0493 0.00228   23 0.000474 0.0461 0.0451, 0.054 0.77
PWD/PhJ m 0.0473 0.00242   22 0.000515 0.0511 0.0432, 0.055 -0.53


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
B6.PWD-Chr1 f 0.0486 0.0006 0.0498 0.0474
B6.PWD-Chr1 m 0.0486 0.0006 0.0497 0.0474
B6.PWD-Chr10.1 f 0.0477 0.0005 0.0487 0.0468
B6.PWD-Chr10.1 m 0.0506 0.0005 0.0516 0.0495
B6.PWD-Chr10.2 f 0.0503 0.0005 0.0512 0.0494
B6.PWD-Chr10.2 m 0.0491 0.0005 0.0501 0.0482
B6.PWD-Chr10.3 f 0.0477 0.0006 0.0488 0.0465
B6.PWD-Chr10.3 m 0.049 0.0006 0.0502 0.0478
B6.PWD-Chr11.1 f 0.0488 0.0006 0.05 0.0477
B6.PWD-Chr11.1 m 0.0488 0.0006 0.05 0.0477
B6.PWD-Chr11.2 f 0.0461 0.0005 0.0471 0.0451
B6.PWD-Chr11.2 m 0.0474 0.0005 0.0483 0.0464
B6.PWD-Chr11.3 f 0.0449 0.0005 0.0459 0.0439
B6.PWD-Chr11.3 m 0.0467 0.0006 0.0479 0.0455
B6.PWD-Chr12 f 0.0483 0.0006 0.0494 0.0471
B6.PWD-Chr12 m 0.0479 0.0006 0.0491 0.0467
B6.PWD-Chr13 f 0.0454 0.0006 0.0465 0.0442
B6.PWD-Chr13 m 0.046 0.0006 0.0472 0.0448
B6.PWD-Chr14 f 0.0492 0.0006 0.0504 0.048
B6.PWD-Chr14 m 0.0467 0.0006 0.0479 0.0455
B6.PWD-Chr15 f 0.048 0.0006 0.0492 0.0469
B6.PWD-Chr15 m 0.0474 0.0006 0.0486 0.0463
B6.PWD-Chr16 f 0.0458 0.0006 0.047 0.0447
B6.PWD-Chr16 m 0.0464 0.0006 0.0476 0.0452
B6.PWD-Chr17 f 0.0478 0.0006 0.0489 0.0466
B6.PWD-Chr17 m 0.0484 0.0005 0.0494 0.0473
B6.PWD-Chr18 f 0.0506 0.0006 0.0517 0.0495
B6.PWD-Chr18 m 0.0484 0.0006 0.0495 0.0473
B6.PWD-Chr19 f 0.0493 0.0006 0.0505 0.0481
B6.PWD-Chr19 m 0.0468 0.0006 0.048 0.0456
B6.PWD-Chr2 f 0.0495 0.0006 0.0506 0.0483
B6.PWD-Chr2 m 0.0497 0.0005 0.0507 0.0486
B6.PWD-Chr3 f 0.0478 0.0006 0.049 0.0466
B6.PWD-Chr3 m 0.0471 0.0006 0.0483 0.0459
B6.PWD-Chr5 f 0.0501 0.0005 0.0512 0.049
B6.PWD-Chr5 m 0.0487 0.0005 0.0496 0.0478
B6.PWD-Chr6 f 0.0483 0.0005 0.0494 0.0472
B6.PWD-Chr6 m 0.0476 0.0006 0.0487 0.0464
B6.PWD-Chr8 f 0.048 0.0009 0.0497 0.0463
B6.PWD-Chr8 m 0.0493 0.0008 0.0508 0.0478
B6.PWD-Chr9 f 0.0455 0.0006 0.0467 0.0443
B6.PWD-Chr9 m 0.0471 0.0006 0.0483 0.0459
B6.PWD-ChrX.1 f 0.0497 0.0006 0.0509 0.0485
B6.PWD-ChrX.1 m 0.0487 0.0006 0.0499 0.0475
B6.PWD-ChrX.2 f 0.0478 0.0005 0.0487 0.0468
B6.PWD-ChrX.2 m 0.0458 0.0006 0.0469 0.0447
B6.PWD-ChrX.3 f 0.048 0.0004 0.0488 0.0471
B6.PWD-ChrX.3 m 0.0501 0.0006 0.0513 0.049
B6.PWD-ChrY f 0.0499 0.0006 0.0511 0.0487
B6.PWD-ChrY m 0.0495 0.0006 0.0507 0.0483
B6.PWD-mt f 0.0479 0.0006 0.0491 0.0467
B6.PWD-mt m 0.0469 0.0006 0.0481 0.0457
C57BL/6J f 0.0469 0.0004 0.0476 0.0461
C57BL/6J m 0.0473 0.0004 0.0481 0.0466
PWD/PhJ f 0.0493 0.0004 0.05 0.0486
PWD/PhJ m 0.0473 0.0004 0.048 0.0466


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
B6.PWD-Chr1 both 0.0486 0.0004 0.0494 0.0477
B6.PWD-Chr10.1 both 0.0491 0.0004 0.0499 0.0484
B6.PWD-Chr10.2 both 0.0497 0.0003 0.0503 0.0491
B6.PWD-Chr10.3 both 0.0483 0.0004 0.0491 0.0475
B6.PWD-Chr11.1 both 0.0488 0.0004 0.0497 0.048
B6.PWD-Chr11.2 both 0.0467 0.0004 0.0474 0.046
B6.PWD-Chr11.3 both 0.0458 0.0004 0.0466 0.045
B6.PWD-Chr12 both 0.0481 0.0004 0.0489 0.0473
B6.PWD-Chr13 both 0.0457 0.0004 0.0465 0.0449
B6.PWD-Chr14 both 0.0479 0.0004 0.0488 0.0471
B6.PWD-Chr15 both 0.0477 0.0004 0.0486 0.0469
B6.PWD-Chr16 both 0.0461 0.0004 0.047 0.0453
B6.PWD-Chr17 both 0.0481 0.0004 0.0488 0.0473
B6.PWD-Chr18 both 0.0495 0.0004 0.0503 0.0487
B6.PWD-Chr19 both 0.048 0.0004 0.0489 0.0472
B6.PWD-Chr2 both 0.0496 0.0004 0.0503 0.0488
B6.PWD-Chr3 both 0.0475 0.0004 0.0483 0.0466
B6.PWD-Chr5 both 0.0494 0.0004 0.0501 0.0487
B6.PWD-Chr6 both 0.0479 0.0004 0.0487 0.0471
B6.PWD-Chr8 both 0.0487 0.0006 0.0498 0.0475
B6.PWD-Chr9 both 0.0463 0.0004 0.0471 0.0455
B6.PWD-ChrX.1 both 0.0492 0.0004 0.05 0.0483
B6.PWD-ChrX.2 both 0.0468 0.0004 0.0475 0.046
B6.PWD-ChrX.3 both 0.0491 0.0004 0.0498 0.0483
B6.PWD-ChrY both 0.0497 0.0004 0.0506 0.0489
B6.PWD-mt both 0.0474 0.0004 0.0482 0.0466
C57BL/6J both 0.0471 0.0003 0.0476 0.0466
PWD/PhJ both 0.0483 0.0003 0.0488 0.0478




GWAS analysis not available: Strain panel must be either Inbred, HMDP, BXD, BXH, CXB, or AXB/BXA