Phenotype measure:   Palmer1   freezing_btw_tones

ID, description, units MPD:25505   freezing_btw_tones   time freezing in altered context during 30 s in between 2 tones, day 3   [s]
Data set, strains Palmer1   B6.A consomic w/par   19 strains     sex: both     age: 7-12wks
Procedure fear conditioning test
Ontology mappings

  STRAIN COMPARISON PLOT
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Palmer1 - time freezing in altered context during 30 s in between 2 tones, day 3



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested19 strains18 strains
Mean of the strain means41.4   s 34.5   s
Median of the strain means39.4   s 34.8   s
SD of the strain means± 8.44 ± 6.20
Coefficient of variation (CV)0.204 0.180
Min–max range of strain means25.6   –   58.9   s 23.1   –   53.9   s
Mean sample size per strain10.8   mice 11.4   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 2500.4438 2500.4438 5.8935 0.0156
strain 17 16985.9373 999.1728 2.355 0.0018
sex:strain 17 4161.941 244.8201 0.577 0.909
Residuals 415 176073.9703 424.2746


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
A/J f 58.9 20.7   7 7.83 0.352 28.3, 84.1 2.07
A/J m 35.5 18.2   9 6.07 0.513 9.73, 60.2 0.15
B6.A-Chr1 f 40.9 17.5   8 6.19 0.428 13.8, 62.8 -0.06
B6.A-Chr1 m 35.3 19.8   11 5.98 0.562 6.25, 78.8 0.12
B6.A-Chr10 f 58.1 21.8   11 6.57 0.375 29.2, 100.0 1.97
B6.A-Chr10 m 53.9 22.8   14 6.09 0.423 19.5, 93.8 3.12
B6.A-Chr11 f 38.3 22.4   11 6.76 0.586 16.8, 80.4 -0.37
B6.A-Chr11 m 36.4 22.2   13 6.14 0.609 3.57, 69.0 0.3
B6.A-Chr12 f 38.9 20.9   12 6.02 0.536 6.19, 69.9 -0.3
B6.A-Chr12 m 23.1 14.7   9 4.91 0.638 -1.85
B6.A-Chr14 f 25.6 13.3   11 4.0 0.518 3.54, 46.9 -1.88
B6.A-Chr14 m 29.3 16.4   11 4.94 0.559 5.31, 60.2 -0.85
B6.A-Chr15 f 48.1 17.4   7 6.57 0.362 26.6, 76.1 0.79
B6.A-Chr15 m 33.2 21.9   6 8.92 0.659 6.19, 57.5 -0.22
B6.A-Chr16 f 45.9 20.1   10 6.35 0.437 14.2, 80.5 0.53
B6.A-Chr17 f 39.4 22.2   12 6.4 0.562 15.0, 87.6 -0.24
B6.A-Chr17 m 35.2 16.7   11 5.04 0.475 9.73, 65.5 0.1
B6.A-Chr18 f 51.8 30.4   12 8.78 0.588 6.19, 88.5 1.23
B6.A-Chr18 m 40.5 20.8   11 6.27 0.513 4.42, 62.8 0.96
B6.A-Chr19 f 33.6 23.2   13 6.43 0.69 5.31, 75.2 -0.93
B6.A-Chr19 m 34.4 18.4   12 5.31 0.535 6.19, 62.0 -0.02
B6.A-Chr3 f 37.6 35.3   9 11.8 0.939 6.19, 99.1 -0.46
B6.A-Chr3 m 33.4 22.4   9 7.48 0.671 -0.19
B6.A-Chr4 f 46.0 26.4   7 9.97 0.573 0.54
B6.A-Chr4 m 29.7 14.2   11 4.29 0.48 1.77, 46.0 -0.78
B6.A-Chr5 f 39.4 20.7   10 6.54 0.525 11.5, 67.3 -0.24
B6.A-Chr5 m 37.7 24.1   13 6.67 0.639 7.08, 78.8 0.51
B6.A-Chr6 f 43.2 16.4   9 5.47 0.38 6.19, 58.4 0.21
B6.A-Chr6 m 36.3 18.2   13 5.06 0.503 10.6, 69.0 0.28
B6.A-Chr7 f 33.7 23.7   13 6.58 0.704 -0.92
B6.A-Chr7 m 31.2 14.0   13 3.89 0.45 10.6, 56.6 -0.54
B6.A-Chr9 f 36.9 24.3   14 6.48 0.657 3.57, 69.0 -0.54
B6.A-Chr9 m 30.7 13.9   12 4.02 0.454 12.4, 59.3 -0.62
B6.A-ChrX f 34.8 21.1   14 5.64 0.607 1.77, 62.8 -0.79
B6.A-ChrX m 30.8 20.5   11 6.17 0.663 -0.6
C57BL/6J f 36.3 18.0   44 2.72 0.496 -0.61
C57BL/6J m 35.3 19.7   38 3.19 0.557 0.12


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
A/J f 58.9 7.7853 74.2035 43.5965
A/J m 35.5033 6.866 48.9998 22.0069
B6.A-Chr1 f 40.875 7.2825 55.1901 26.5599
B6.A-Chr1 m 35.3136 6.2105 47.5216 23.1057
B6.A-Chr10 f 58.0909 6.2105 70.2989 45.8829
B6.A-Chr10 m 53.8643 5.505 64.6855 43.0431
B6.A-Chr11 f 38.2636 6.2105 50.4716 26.0557
B6.A-Chr11 m 36.3538 5.7128 47.5836 25.1241
B6.A-Chr12 f 38.935 5.9461 50.6232 27.2468
B6.A-Chr12 m 23.1111 6.866 36.6075 9.6147
B6.A-Chr14 f 25.5764 6.2105 37.7843 13.3684
B6.A-Chr14 m 29.31 6.2105 41.518 17.102
B6.A-Chr15 f 48.0571 7.7853 63.3607 32.7536
B6.A-Chr15 m 33.1783 8.4091 49.708 16.6487
B6.A-Chr17 f 39.4417 5.9461 51.1299 27.7534
B6.A-Chr17 m 35.1573 6.2105 47.3652 22.9493
B6.A-Chr18 f 51.7792 5.9461 63.4674 40.0909
B6.A-Chr18 m 40.5382 6.2105 52.7462 28.3302
B6.A-Chr19 f 33.6262 5.7128 44.8559 22.3964
B6.A-Chr19 m 34.3683 5.9461 46.0566 22.6801
B6.A-Chr3 f 37.5578 6.866 51.0542 24.0614
B6.A-Chr3 m 33.4389 6.866 46.9353 19.9425
B6.A-Chr4 f 46.0429 7.7853 61.3464 30.7393
B6.A-Chr4 m 29.6791 6.2105 41.8871 17.4711
B6.A-Chr5 f 39.38 6.5136 52.1838 26.5762
B6.A-Chr5 m 37.6523 5.7128 48.882 26.4226
B6.A-Chr6 f 43.1656 6.866 56.662 29.6691
B6.A-Chr6 m 36.2692 5.7128 47.4989 25.0395
B6.A-Chr7 f 33.7 5.7128 44.9297 22.4703
B6.A-Chr7 m 31.1692 5.7128 42.3989 19.9395
B6.A-Chr9 f 36.95 5.505 47.7712 26.1288
B6.A-Chr9 m 30.6917 5.9461 42.3799 19.0034
B6.A-ChrX f 34.7814 5.505 45.6026 23.9602
B6.A-ChrX m 30.8273 6.2105 43.0352 18.6193
C57BL/6J f 36.3489 3.1053 42.4529 30.2449
C57BL/6J m 35.2684 3.3414 41.8366 28.7002


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
A/J both 47.2017 5.1902 57.404 36.9993
B6.A-Chr1 both 38.0943 4.7855 47.5012 28.6874
B6.A-Chr10 both 55.9776 4.1496 64.1344 47.8208
B6.A-Chr11 both 37.3087 4.2192 45.6024 29.0151
B6.A-Chr12 both 31.0231 4.5414 39.9501 22.096
B6.A-Chr14 both 27.4432 4.3915 36.0755 18.8108
B6.A-Chr15 both 40.6177 5.7298 51.8808 29.3547
B6.A-Chr17 both 37.2995 4.299 45.7501 28.8489
B6.A-Chr18 both 46.1587 4.299 54.6093 37.7081
B6.A-Chr19 both 33.9972 4.1229 42.1016 25.8929
B6.A-Chr3 both 35.4983 4.855 45.0417 25.9549
B6.A-Chr4 both 37.861 4.9795 47.6491 28.0728
B6.A-Chr5 both 38.5162 4.332 47.0315 30.0008
B6.A-Chr6 both 39.7174 4.4659 48.4961 30.9387
B6.A-Chr7 both 32.4346 4.0396 40.3752 24.494
B6.A-Chr9 both 33.8208 4.0516 41.785 25.8566
B6.A-ChrX both 32.8044 4.1496 40.9611 24.6476
C57BL/6J both 35.8086 2.2808 40.292 31.3253




GWAS analysis not available: Strain panel must be either Inbred, HMDP, BXD, BXH, CXB, or AXB/BXA