Phenotype measure:   Evsikova1   vert_Dk

ID, description, units MPD:24728   vert_Dk   rearing activity (beam break triplets during 24h)   [n]  dark
Data set, strains Evsikova1   inbred   14 strains     sex: both     age: 26wks
Procedure monitoring system
Ontology mappings

  STRAIN COMPARISON PLOT
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Evsikova1 - rearing activity (beam break triplets during 24h) dark



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested12 strains12 strains
Mean of the strain means4697   n 3176   n
Median of the strain means3674   n 2041   n
SD of the strain means± 3271 ± 2994
Coefficient of variation (CV)0.697 0.943
Min–max range of strain means254   –   11551   n 402   –   10057   n
Mean sample size per strain7.0   mice 7.2   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 2393085.0874 2393085.0874 0.239 0.6258
strain 9 1280364541.9328 142262726.8814 14.2099 < 0.0001
sex:strain 9 122161077.3659 13573453.0407 1.3558 0.2159
Residuals 120 1201379006.6067 10011491.7217


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ f 254.0 308.0   8 109.0 1.21 10.0, 812.0 -1.36
129S1/SvImJ m 402.0 197.0   8 69.6 0.489 189.0, 746.0 -0.93
A/J f 2295.0 1023.0   7 387.0 0.446 1064.0, 3736.0 -0.73
A/J m 1916.0 893.0   5 399.0 0.466 1062.0, 3331.0 -0.42
AKR/J f 2478.0 1029.0   4 514.0 0.415 1375.0, 3806.0 -0.68
AKR/J m 816.0 426.0   4 213.0 0.521 227.0, 1228.0 -0.79
BALB/cByJ f 6990.0 4619.0   8 1633.0 0.661 3803.0, 17866.0 0.7
BALB/cByJ m 3462.0 963.0   8 341.0 0.278 1940.0, 4853.0 0.1
BTBR T+ Itpr3tf/J f 11551.0 3830.0   4 1915.0 0.332 7550.0, 15356.0 2.1
BTBR T+ Itpr3tf/J m 10057.0 5816.0   12 1679.0 0.578 4110.0, 23166.0 2.3
BUB/BnJ f 4043.0 1884.0   7 712.0 0.466 763.0, 6322.0 -0.2
BUB/BnJ m 769.0 212.0   6 86.7 0.276 592.0, 1136.0 -0.8
C3H/HeJ m 1508.0 469.0   8 166.0 0.311 730.0, 2047.0 -0.56
C57BL/10J f 4925.0 2683.0   8 949.0 0.545 2173.0, 9027.0 0.07
C57BL/6J f 3306.0 1014.0   8 358.0 0.307 1983.0, 4811.0 -0.43
C57BL/6J m 2166.0 807.0   7 305.0 0.372 1445.0, 3693.0 -0.34
C57BLKS/J f 2616.0 679.0   8 240.0 0.26 1752.0, 3441.0 -0.64
C57BLKS/J m 3046.0 2276.0   13 631.0 0.747 1074.0, 9338.0 -0.04
C57BR/cdJ f 8323.0 7177.0   8 2538.0 0.862 1621.0, 24132.0 1.11
C57BR/cdJ m 5926.0 3025.0   6 1235.0 0.51 2698.0, 10789.0 0.92
C57L/J f 2038.0 1479.0   2   1046.0 0.726 992.0, 3083.0 -0.81
C57L/J m 6996.0 4258.0   7 1609.0 0.609 2947.0, 14544.0 1.28
CAST/EiJ f 7540.0 4561.0   8 1613.0 0.605 1688.0, 16461.0 0.87
CBA/J m 1048.0 364.0   5 163.0 0.348 698.0, 1594.0 -0.71


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ f 254.375 1118.6762 2469.276 0.0
129S1/SvImJ m 402.25 1118.6762 2617.151 0.0
A/J f 2295.1429 1195.9152 4662.9717 0.0
A/J m 1916.0 1415.0259 4717.6528 0.0
AKR/J f 2477.75 1582.0471 5610.0931 0.0
AKR/J m 816.5 1582.0471 3948.8431 0.0
BALB/cByJ f 6990.375 1118.6762 9205.276 4775.474
BALB/cByJ m 3462.375 1118.6762 5677.276 1247.474
BTBR T+ Itpr3tf/J f 11551.0 1582.0471 14683.3431 8418.6569
BTBR T+ Itpr3tf/J m 10056.9167 913.3953 11865.3758 8248.4575
BUB/BnJ f 4042.7143 1195.9152 6410.5431 1674.8855
BUB/BnJ m 768.8333 1291.736 3326.3808 0.0
C57BL/6J f 3305.75 1118.6762 5520.651 1090.849
C57BL/6J m 2166.1429 1195.9152 4533.9717 0.0
C57BLKS/J f 2615.5 1118.6762 4830.401 400.599
C57BLKS/J m 3046.3846 877.5618 4783.8959 1308.8733
C57BR/cdJ f 8322.75 1118.6762 10537.651 6107.849
C57BR/cdJ m 5926.1667 1291.736 8483.7141 3368.6192
C57L/J f 2037.5 2237.3524 6467.3021 0.0
C57L/J m 6996.2857 1195.9152 9364.1145 4628.4569


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ both 328.3125 791.0235 1894.484 0.0
A/J both 2105.5714 926.3519 3939.6837 271.4591
AKR/J both 1647.125 1118.6762 3862.026 0.0
BALB/cByJ both 5226.375 791.0235 6792.5465 3660.2035
BTBR T+ Itpr3tf/J both 10803.9583 913.3953 12612.4175 8995.4992
BUB/BnJ both 2405.7738 880.1697 4148.4486 663.099
C57BL/6J both 2735.9464 818.7871 4357.088 1114.8049
C57BLKS/J both 2830.9423 710.9063 4238.4874 1423.3973
C57BR/cdJ both 7124.4583 854.4031 8816.1169 5432.7997
C57L/J both 4516.8929 1268.4596 7028.3546 2005.4311




  GWAS USING LINEAR MIXED MODELS