Phenotype measure:   Evsikova1   vert_Lt

ID, description, units MPD:24727   vert_Lt   rearing activity (beam break triplets during 24h)   [n]  light
Data set, strains Evsikova1   inbred   14 strains     sex: both     age: 26wks
Procedure monitoring system
Ontology mappings

  STRAIN COMPARISON PLOT
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Evsikova1 - rearing activity (beam break triplets during 24h) light



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested12 strains12 strains
Mean of the strain means1310   n 928   n
Median of the strain means790   n 701   n
SD of the strain means± 1060 ± 748
Coefficient of variation (CV)0.810 0.806
Min–max range of strain means62.0   –   2643   n 94.1   –   2703   n
Mean sample size per strain7.0   mice 7.2   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 368310.3948 368310.3948 0.6648 0.4165
strain 9 81888485.088 9098720.5653 16.4224 < 0.0001
sex:strain 9 17274077.2428 1919341.9159 3.4643 0.0008
Residuals 120 66485002.1602 554041.6847


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ f 62.0 53.7   8 19.0 0.867 -1.18
129S1/SvImJ m 94.1 41.7   8 14.7 0.443 47.0, 146.0 -1.12
A/J f 358.0 97.6   7 36.9 0.273 242.0, 515.0 -0.9
A/J m 747.0 229.0   5 103.0 0.307 497.0, 1096.0 -0.24
AKR/J f 493.0 330.0   4 165.0 0.67 178.0, 951.0 -0.77
AKR/J m 498.0 231.0   4 115.0 0.463 261.0, 699.0 -0.58
BALB/cByJ f 2613.0 1460.0   8 516.0 0.559 929.0, 5400.0 1.23
BALB/cByJ m 1489.0 476.0   8 168.0 0.319 937.0, 2065.0 0.75
BTBR T+ Itpr3tf/J f 1840.0 695.0   4 347.0 0.378 1297.0, 2856.0 0.5
BTBR T+ Itpr3tf/J m 1259.0 798.0   12 230.0 0.633 388.0, 2840.0 0.44
BUB/BnJ f 912.0 423.0   7 160.0 0.464 363.0, 1375.0 -0.37
BUB/BnJ m 753.0 244.0   6 99.5 0.324 446.0, 1050.0 -0.23
C3H/HeJ m 580.0 235.0   8 83.0 0.405 340.0, 993.0 -0.47
C57BL/10J f 2592.0 1456.0   8 515.0 0.562 1435.0, 5231.0 1.21
C57BL/6J f 669.0 398.0   8 141.0 0.595 201.0, 1256.0 -0.6
C57BL/6J m 655.0 297.0   7 112.0 0.454 297.0, 1037.0 -0.37
C57BLKS/J f 569.0 245.0   8 86.8 0.431 298.0, 1048.0 -0.7
C57BLKS/J m 375.0 320.0   13 88.8 0.854 86.0, 1024.0 -0.74
C57BR/cdJ f 2643.0 1555.0   8 550.0 0.588 531.0, 4783.0 1.26
C57BR/cdJ m 1744.0 1474.0   6 602.0 0.845 402.0, 3590.0 1.09
C57L/J f 328.0 152.0   2   108.0 0.464 220.0, 435.0 -0.93
C57L/J m 2703.0 1173.0   7 443.0 0.434 1787.0, 5054.0 2.37
CAST/EiJ f 2635.0 1943.0   8 687.0 0.737 769.0, 6830.0 1.25
CBA/J m 242.0 135.0   5 60.3 0.558 63.0, 441.0 -0.92


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ f 62.0 263.1638 583.0461 0.0
129S1/SvImJ m 94.125 263.1638 615.1711 0.0
A/J f 358.0 281.334 915.0217 0.0
A/J m 747.4 332.8789 1406.477 88.323
AKR/J f 493.0 372.1699 1229.8705 0.0
AKR/J m 498.25 372.1699 1235.1205 0.0
BALB/cByJ f 2613.125 263.1638 3134.1711 2092.0789
BALB/cByJ m 1489.125 263.1638 2010.1711 968.0789
BTBR T+ Itpr3tf/J f 1839.5 372.1699 2576.3705 1102.6295
BTBR T+ Itpr3tf/J m 1259.3333 214.8724 1684.7657 833.901
BUB/BnJ f 911.5714 281.334 1468.5931 354.5497
BUB/BnJ m 752.6667 303.8754 1354.3189 151.0145
C57BL/6J f 668.875 263.1638 1189.9211 147.8289
C57BL/6J m 655.4286 281.334 1212.4503 98.4069
C57BLKS/J f 569.125 263.1638 1090.1711 48.0789
C57BLKS/J m 375.1538 206.4427 783.896 0.0
C57BR/cdJ f 2643.25 263.1638 3164.2961 2122.2039
C57BR/cdJ m 1744.0 303.8754 2345.6522 1142.3478
C57L/J f 327.5 526.3277 1369.5922 0.0
C57L/J m 2702.5714 281.334 3259.5931 2145.5497


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ both 78.0625 186.0849 446.4977 0.0
A/J both 552.7 217.9204 984.1672 121.2328
AKR/J both 495.625 263.1638 1016.6711 0.0
BALB/cByJ both 2051.125 186.0849 2419.5602 1682.6898
BTBR T+ Itpr3tf/J both 1549.4167 214.8724 1974.849 1123.9843
BUB/BnJ both 832.119 207.0562 1242.0759 422.1622
C57BL/6J both 662.1518 192.6162 1043.5185 280.7851
C57BLKS/J both 472.1394 167.2377 803.2584 141.0204
C57BR/cdJ both 2193.625 200.9947 2591.5805 1795.6695
C57L/J both 1515.0357 298.3998 2105.8465 924.225




  GWAS USING LINEAR MIXED MODELS