Phenotype measure:   Peters4   pctRetic_M18

ID, description, units MPD:24383   pctRetic_M18   reticulocyte differential   [%]  at age 18mo
Data set, strains Peters4   inbred   29 strains     sex: both     age: 78wks
Procedure complete blood count
Ontology mappings

  STRAIN COMPARISON PLOT
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Peters4 - reticulocyte differential at age 18mo



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested25 strains28 strains
Mean of the strain means3.53   % 2.93   %
Median of the strain means3.33   % 2.91   %
SD of the strain means± 1.26 ± 0.625
Coefficient of variation (CV)0.356 0.214
Min–max range of strain means1.82   –   7.81   % 1.76   –   4.17   %
Mean sample size per strain7.0   mice 7.6   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 22.557 22.557 12.3637 0.0005
strain 23 216.7287 9.423 5.1648 < 0.0001
sex:strain 23 111.9912 4.8692 2.6688 0.0001
Residuals 299 545.5127 1.8245


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ m 2.33 0.624   7 0.236 0.268 1.2, 3.3 -0.95
A/J f 3.26 1.18   7 0.447 0.363 2.1, 5.7 -0.22
A/J m 3.27 1.64   13 0.454 0.501 2.2, 7.5 0.55
BALB/cByJ f 2.59 0.546   8 0.193 0.211 2.0, 3.7 -0.75
BALB/cByJ m 2.9 0.507   7 0.191 0.175 2.3, 3.9 -0.04
BTBR T+ Itpr3tf/J f 7.81 5.79   8 2.05 0.741 3.2, 17.2 3.4
BTBR T+ Itpr3tf/J m 2.62 0.554   5 0.248 0.211 1.7, 3.0 -0.49
BUB/BnJ f 2.5 0.235   5 0.105 0.0938 2.1, 2.7 -0.82
BUB/BnJ m 2.73 0.273   6 0.112 0.1 2.4, 3.1 -0.31
C57BL/10J f 5.27 3.0   6 1.23 0.57 3.1, 10.8 1.38
C57BL/10J m 3.18 0.356   13 0.0986 0.112 2.6, 3.6 0.41
C57BL/6J f 3.33 0.25   7 0.0944 0.075 3.0, 3.7 -0.16
C57BL/6J m 3.4 0.208   7 0.0787 0.0612 3.1, 3.7 0.76
C57BLKS/J m 2.92 0.345   16 0.0862 0.118 2.1, 3.4 -0.01
C57BR/cdJ f 3.49 0.939   8 0.332 0.269 2.4, 5.4 -0.03
C57BR/cdJ m 3.47 0.26   8 0.0921 0.075 3.1, 3.9 0.87
C57L/J f 3.51 0.636   7 0.24 0.181 3.0, 4.6 -0.02
C57L/J m 4.01 1.38   7 0.522 0.344 2.3, 6.4 1.73
CAST/EiJ f 2.6 0.321   8 0.113 0.123 2.1, 3.2 -0.74
CBA/J m 1.9 0.339   5 0.152 0.178 1.6, 2.4 -1.64
DBA/2J f 1.82 0.542   6 0.221 0.298 0.8, 2.3 -1.36
DBA/2J m 1.92 0.147   6 0.0601 0.0768 1.7, 2.1 -1.61
FVB/NJ f 3.17 0.531   7 0.201 0.168 2.6, 4.0 -0.29
FVB/NJ m 3.86 0.52   12 0.15 0.135 3.1, 4.8 1.49
KK/HlJ f 4.87 1.59   6 0.649 0.327 3.0, 6.4 1.06
KK/HlJ m 3.1 0.486   7 0.184 0.157 2.3, 3.6 0.28
LP/J m 2.2 0.262   8 0.0926 0.119 1.8, 2.5 -1.16
MRL/MpJ f 3.67 1.28   7 0.483 0.348 1.5, 5.3 0.11
MRL/MpJ m 2.86 1.03   8 0.362 0.358 0.7, 4.1 -0.11
NOD.B10Sn-H2b/J f 5.22 1.55   6 0.631 0.296 2.6, 6.8 1.34
NOD.B10Sn-H2b/J m 4.17 0.579   6 0.236 0.139 3.6, 4.9 1.99
NON/ShiLtJ f 3.5 0.834   5 0.373 0.238 2.6, 4.6 -0.03
NON/ShiLtJ m 3.26 0.65   7 0.246 0.2 2.5, 4.5 0.53
NZO/HlLtJ f 2.81 0.768   10 0.243 0.273 2.1, 4.6 -0.58
NZO/HlLtJ m 2.75 0.0707   2   0.05 0.0257 2.7, 2.8 -0.28
NZW/LacJ f 3.61 1.05   7 0.398 0.291 2.1, 5.4 0.06
NZW/LacJ m 2.77 0.197   6 0.0803 0.0711 2.5, 3.0 -0.25
P/J f 2.5 0.7   7 0.265 0.28 1.6, 3.6 -0.82
P/J m 2.62 0.327   5 0.146 0.125 2.2, 3.1 -0.49
PL/J f 4.4 2.56   8 0.904 0.581 2.7, 10.5 0.69
PL/J m 3.57 1.74   9 0.582 0.489 2.2, 8.1 1.03
PWD/PhJ f 2.68 0.147   6 0.0601 0.0549 2.5, 2.9 -0.68
PWD/PhJ m 2.17 0.304   7 0.115 0.14 1.7, 2.5 -1.21
RIIIS/J f 2.83 0.423   8 0.15 0.15 2.3, 3.6 -0.56
RIIIS/J m 1.76 0.151   8 0.0532 0.0854 1.6, 2.1 -1.86
SJL/J f 3.94 2.51   7 0.948 0.636 1.9, 8.7 0.32
SJL/J m 3.4 0.739   4 0.37 0.217 2.5, 4.3 0.76
SM/J f 2.43 0.432   6 0.176 0.178 1.9, 3.0 -0.88
SM/J m 3.09 0.409   10 0.129 0.133 2.6, 3.6 0.26
SWR/J f 3.93 0.797   7 0.301 0.203 2.8, 5.4 0.32
SWR/J m 3.21 0.405   8 0.143 0.126 2.7, 3.9 0.45
WSB/EiJ f 2.6 0.872   8 0.308 0.335 1.5, 3.8 -0.74
WSB/EiJ m 2.48 0.373   9 0.124 0.151 2.2, 3.4 -0.71


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
A/J f 3.2571 0.5105 4.2618 2.2525
A/J m 3.2692 0.3746 4.0065 2.532
BALB/cByJ f 2.5875 0.4776 3.5273 1.6477
BALB/cByJ m 2.9 0.5105 3.9047 1.8953
BTBR T+ Itpr3tf/J f 7.8125 0.4776 8.7523 6.8727
BTBR T+ Itpr3tf/J m 2.62 0.6041 3.8088 1.4312
BUB/BnJ f 2.5 0.6041 3.6888 1.3112
BUB/BnJ m 2.7333 0.5514 3.8185 1.6482
C57BL/10J f 5.2667 0.5514 6.3518 4.1815
C57BL/10J m 3.1846 0.3746 3.9218 2.4474
C57BL/6J f 3.3286 0.5105 4.3333 2.3239
C57BL/6J m 3.4 0.5105 4.4047 2.3953
C57BR/cdJ f 3.4875 0.4776 4.4273 2.5477
C57BR/cdJ m 3.475 0.4776 4.4148 2.5352
C57L/J f 3.5143 0.5105 4.519 2.5096
C57L/J m 4.0143 0.5105 5.019 3.0096
DBA/2J f 1.8167 0.5514 2.9018 0.7315
DBA/2J m 1.9167 0.5514 3.0018 0.8315
FVB/NJ f 3.1714 0.5105 4.1761 2.1667
FVB/NJ m 3.8583 0.3899 4.6257 3.091
KK/HlJ f 4.8667 0.5514 5.9518 3.7815
KK/HlJ m 3.1 0.5105 4.1047 2.0953
MRL/MpJ f 3.6714 0.5105 4.6761 2.6667
MRL/MpJ m 2.8625 0.4776 3.8023 1.9227
NOD.B10Sn-H2b/J f 5.2167 0.5514 6.3018 4.1315
NOD.B10Sn-H2b/J m 4.1667 0.5514 5.2518 3.0815
NON/ShiLtJ f 3.5 0.6041 4.6888 2.3112
NON/ShiLtJ m 3.2571 0.5105 4.2618 2.2525
NZO/HlLtJ f 2.81 0.4271 3.6506 1.9694
NZO/HlLtJ m 2.75 0.9551 4.6296 0.8704
NZW/LacJ f 3.6143 0.5105 4.619 2.6096
NZW/LacJ m 2.7667 0.5514 3.8518 1.6815
P/J f 2.5 0.5105 3.5047 1.4953
P/J m 2.62 0.6041 3.8088 1.4312
PL/J f 4.4 0.4776 5.3398 3.4602
PL/J m 3.5667 0.4502 4.4527 2.6806
PWD/PhJ f 2.6833 0.5514 3.7685 1.5982
PWD/PhJ m 2.1714 0.5105 3.1761 1.1667
RIIIS/J f 2.825 0.4776 3.7648 1.8852
RIIIS/J m 1.7625 0.4776 2.7023 0.8227
SJL/J f 3.9429 0.5105 4.9475 2.9382
SJL/J m 3.4 0.6754 4.7291 2.0709
SM/J f 2.4333 0.5514 3.5185 1.3482
SM/J m 3.09 0.4271 3.9306 2.2494
SWR/J f 3.9286 0.5105 4.9333 2.9239
SWR/J m 3.2125 0.4776 4.1523 2.2727
WSB/EiJ f 2.6 0.4776 3.5398 1.6602
WSB/EiJ m 2.4778 0.4502 3.3638 1.5917


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
A/J both 3.2632 0.3166 3.8863 2.6401
BALB/cByJ both 2.7437 0.3495 3.4316 2.0559
BTBR T+ Itpr3tf/J both 5.2162 0.385 5.9739 4.4586
BUB/BnJ both 2.6167 0.409 3.4215 1.8119
C57BL/10J both 4.2256 0.3333 4.8816 3.5697
C57BL/6J both 3.3643 0.361 4.0747 2.6539
C57BR/cdJ both 3.4812 0.3377 4.1458 2.8167
C57L/J both 3.7643 0.361 4.4747 3.0539
DBA/2J both 1.8667 0.3899 2.634 1.0993
FVB/NJ both 3.5149 0.3212 4.147 2.8828
KK/HlJ both 3.9833 0.3757 4.7228 3.2439
MRL/MpJ both 3.267 0.3495 3.9548 2.5791
NOD.B10Sn-H2b/J both 4.6917 0.3899 5.459 3.9243
NON/ShiLtJ both 3.3786 0.3955 4.1568 2.6004
NZO/HlLtJ both 2.78 0.5231 3.8095 1.7505
NZW/LacJ both 3.1905 0.3757 3.9299 2.4511
P/J both 2.56 0.3955 3.3382 1.7818
PL/J both 3.9833 0.3282 4.6291 3.3375
PWD/PhJ both 2.4274 0.3757 3.1668 1.688
RIIIS/J both 2.2937 0.3377 2.9583 1.6292
SJL/J both 3.6714 0.4233 4.5045 2.8384
SM/J both 2.7617 0.3488 3.448 2.0753
SWR/J both 3.5705 0.3495 4.2584 2.8827
WSB/EiJ both 2.5389 0.3282 3.1847 1.8931




  GWAS USING LINEAR MIXED MODELS