Phenotype measure:   Peters4   pctRetic_M12

ID, description, units MPD:24382   pctRetic_M12   reticulocyte differential   [%]  at age 12mo
Data set, strains Peters4   inbred   30 strains     sex: both     age: 52wks
Procedure complete blood count
Ontology mappings

  STRAIN COMPARISON PLOT
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Peters4 - reticulocyte differential at age 12mo



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested30 strains30 strains
Mean of the strain means3.10   % 3.25   %
Median of the strain means3.02   % 3.17   %
SD of the strain means± 0.647 ± 0.718
Coefficient of variation (CV)0.208 0.221
Min–max range of strain means2.11   –   4.79   % 2.04   –   5.01   %
Mean sample size per strain7.8   mice 7.2   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 4.9264 4.9264 3.4543 0.0638
strain 29 158.4256 5.463 3.8305 < 0.0001
sex:strain 29 47.5945 1.6412 1.1508 0.2732
Residuals 388 553.3577 1.4262


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ f 2.39 0.419   8 0.148 0.175 1.7, 3.0 -1.1
129S1/SvImJ m 2.67 0.35   7 0.132 0.131 2.1, 3.1 -0.81
A/J f 2.99 0.53   7 0.201 0.178 2.2, 3.7 -0.18
A/J m 2.98 0.462   6 0.189 0.155 2.5, 3.7 -0.37
BALB/cByJ f 2.86 0.435   7 0.165 0.152 2.3, 3.6 -0.38
BALB/cByJ m 2.71 0.146   7 0.0553 0.0539 2.5, 2.9 -0.75
BTBR T+ Itpr3tf/J f 2.79 0.541   8 0.191 0.194 2.2, 4.0 -0.49
BTBR T+ Itpr3tf/J m 2.76 1.24   8 0.439 0.45 1.5, 5.7 -0.68
BUB/BnJ f 3.11 0.46   7 0.174 0.148 2.4, 3.5 0.01
BUB/BnJ m 2.8 0.292   5 0.13 0.104 2.3, 3.0 -0.62
C3H/HeJ f 3.05 0.351   8 0.124 0.115 2.3, 3.4 -0.08
C3H/HeJ m 3.24 1.15   7 0.434 0.354 2.5, 5.8 -0.01
C57BL/10J f 3.27 0.725   9 0.242 0.222 2.2, 4.3 0.26
C57BL/10J m 3.14 0.288   8 0.102 0.0916 2.7, 3.5 -0.15
C57BL/6J f 3.74 0.911   7 0.344 0.243 2.8, 5.6 0.98
C57BL/6J m 3.63 0.489   6 0.199 0.134 3.0, 4.4 0.53
C57BLKS/J f 3.14 0.729   8 0.258 0.232 2.4, 4.8 0.05
C57BLKS/J m 2.95 0.563   8 0.199 0.191 2.4, 4.1 -0.42
C57BR/cdJ f 3.29 0.5   8 0.177 0.152 2.7, 4.2 0.29
C57BR/cdJ m 3.16 0.256   8 0.0905 0.0809 2.6, 3.4 -0.12
C57L/J f 3.29 0.633   8 0.224 0.193 2.4, 4.1 0.29
C57L/J m 3.55 0.542   8 0.192 0.153 2.9, 4.5 0.42
CAST/EiJ f 2.52 0.287   8 0.101 0.114 2.0, 2.9 -0.9
CAST/EiJ m 3.02 1.37   6 0.559 0.454 2.1, 5.7 -0.32
CBA/J f 3.05 0.207   8 0.0732 0.0679 2.8, 3.4 -0.08
CBA/J m 2.6 0.699   6 0.285 0.269 1.9, 3.9 -0.9
DBA/2J f 2.41 1.0   8 0.355 0.417 1.1, 4.2 -1.07
DBA/2J m 2.17 1.0   7 0.38 0.463 1.2, 4.2 -1.5
FVB/NJ f 4.12 1.53   8 0.54 0.371 1.9, 6.9 1.57
FVB/NJ m 4.11 0.651   8 0.23 0.158 2.7, 4.8 1.2
KK/HlJ f 2.94 0.862   7 0.326 0.293 1.5, 4.1 -0.25
KK/HlJ m 3.74 1.06   11 0.319 0.283 2.6, 6.4 0.69
LP/J f 2.55 0.756   8 0.267 0.296 1.7, 4.1 -0.86
LP/J m 3.17 1.94   7 0.735 0.613 1.8, 7.5 -0.11
MRL/MpJ f 3.97 1.35   8 0.476 0.339 1.1, 5.0 1.34
MRL/MpJ m 3.7 0.307   8 0.109 0.083 3.4, 4.1 0.63
NOD.B10Sn-H2b/J f 4.79 1.18   8 0.419 0.248 3.8, 6.9 2.6
NOD.B10Sn-H2b/J m 3.85 0.239   8 0.0845 0.0621 3.5, 4.2 0.84
NON/ShiLtJ f 3.63 0.915   9 0.305 0.252 2.4, 5.6 0.81
NON/ShiLtJ m 3.77 0.621   7 0.235 0.165 2.4, 4.2 0.73
NZO/HlLtJ f 2.6 0.173   5 0.0775 0.0666 2.5, 2.9 -0.78
NZO/HlLtJ m 2.7 1.28   5 0.574 0.475 1.7, 4.9 -0.76
NZW/LacJ f 4.38 0.725   8 0.256 0.166 3.2, 5.4 1.97
NZW/LacJ m 3.44 0.307   8 0.108 0.0892 3.1, 4.0 0.27
P/J f 2.3 0.365   7 0.138 0.159 1.6, 2.7 -1.24
P/J m 2.2 0.1   3 0.0577 0.0455 2.1, 2.3 -1.46
PL/J f 3.54 0.697   7 0.264 0.197 2.4, 4.5 0.67
PL/J m 5.01 4.92   9 1.64 0.981 2.4, 18.0 2.45
PWD/PhJ f 2.75 0.545   8 0.193 0.198 1.9, 3.7 -0.55
PWD/PhJ m 2.59 0.314   8 0.111 0.121 2.2, 3.1 -0.92
RIIIS/J f 2.42 0.369   8 0.131 0.152 2.0, 3.1 -1.06
RIIIS/J m 2.04 0.331   7 0.125 0.162 1.6, 2.6 -1.68
SJL/J f 2.96 1.07   7 0.405 0.363 1.9, 5.0 -0.22
SJL/J m 5.0 3.93   8 1.39 0.786 2.8, 14.6 2.44
SM/J f 2.55 0.583   8 0.206 0.229 1.8, 3.7 -0.86
SM/J m 3.7 1.6   8 0.564 0.431 2.9, 7.6 0.63
SWR/J f 3.63 0.953   7 0.36 0.263 2.2, 4.8 0.81
SWR/J m 3.79 0.696   7 0.263 0.184 3.0, 4.9 0.76
WSB/EiJ f 2.11 0.655   9 0.218 0.31 1.4, 3.2 -1.54
WSB/EiJ m 3.25 1.72   8 0.609 0.53 2.1, 7.1 0.0


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ f 2.3875 0.4222 3.2176 1.5574
129S1/SvImJ m 2.6714 0.4514 3.5589 1.784
A/J f 2.9857 0.4514 3.8732 2.0983
A/J m 2.9833 0.4875 3.9419 2.0248
BALB/cByJ f 2.8571 0.4514 3.7446 1.9697
BALB/cByJ m 2.7143 0.4514 3.6017 1.8268
BTBR T+ Itpr3tf/J f 2.7875 0.4222 3.6176 1.9574
BTBR T+ Itpr3tf/J m 2.7625 0.4222 3.5926 1.9324
BUB/BnJ f 3.1143 0.4514 4.0017 2.2268
BUB/BnJ m 2.8 0.5341 3.85 1.75
C3H/HeJ f 3.05 0.4222 3.8801 2.2199
C3H/HeJ m 3.2429 0.4514 4.1303 2.3554
C57BL/10J f 3.2667 0.3981 4.0493 2.484
C57BL/10J m 3.1375 0.4222 3.9676 2.3074
C57BL/6J f 3.7429 0.4514 4.6303 2.8554
C57BL/6J m 3.6333 0.4875 4.5919 2.6748
C57BLKS/J f 3.1375 0.4222 3.9676 2.3074
C57BLKS/J m 2.95 0.4222 3.7801 2.1199
C57BR/cdJ f 3.2875 0.4222 4.1176 2.4574
C57BR/cdJ m 3.1625 0.4222 3.9926 2.3324
C57L/J f 3.2875 0.4222 4.1176 2.4574
C57L/J m 3.55 0.4222 4.3801 2.7199
CAST/EiJ f 2.525 0.4222 3.3551 1.6949
CAST/EiJ m 3.0167 0.4875 3.9752 2.0581
CBA/J f 3.05 0.4222 3.8801 2.2199
CBA/J m 2.6 0.4875 3.5586 1.6414
DBA/2J f 2.4125 0.4222 3.2426 1.5824
DBA/2J m 2.1714 0.4514 3.0589 1.284
FVB/NJ f 4.125 0.4222 4.9551 3.2949
FVB/NJ m 4.1125 0.4222 4.9426 3.2824
KK/HlJ f 2.9429 0.4514 3.8303 2.0554
KK/HlJ m 3.7364 0.3601 4.4443 3.0284
LP/J f 2.55 0.4222 3.3801 1.7199
LP/J m 3.1714 0.4514 4.0589 2.284
MRL/MpJ f 3.975 0.4222 4.8051 3.1449
MRL/MpJ m 3.7 0.4222 4.5301 2.8699
NOD.B10Sn-H2b/J f 4.7875 0.4222 5.6176 3.9574
NOD.B10Sn-H2b/J m 3.85 0.4222 4.6801 3.0199
NON/ShiLtJ f 3.6333 0.3981 4.416 2.8507
NON/ShiLtJ m 3.7714 0.4514 4.6589 2.884
NZO/HlLtJ f 2.6 0.5341 3.65 1.55
NZO/HlLtJ m 2.7 0.5341 3.75 1.65
NZW/LacJ f 4.375 0.4222 5.2051 3.5449
NZW/LacJ m 3.4375 0.4222 4.2676 2.6074
P/J f 2.3 0.4514 3.1874 1.4126
P/J m 2.2 0.6895 3.5556 0.8444
PL/J f 3.5429 0.4514 4.4303 2.6554
PL/J m 5.0111 0.3981 5.7938 4.2285
PWD/PhJ f 2.75 0.4222 3.5801 1.9199
PWD/PhJ m 2.5875 0.4222 3.4176 1.7574
RIIIS/J f 2.425 0.4222 3.2551 1.5949
RIIIS/J m 2.0429 0.4514 2.9303 1.1554
SJL/J f 2.9571 0.4514 3.8446 2.0697
SJL/J m 5.0 0.4222 5.8301 4.1699
SM/J f 2.55 0.4222 3.3801 1.7199
SM/J m 3.7 0.4222 4.5301 2.8699
SWR/J f 3.6286 0.4514 4.516 2.7411
SWR/J m 3.7857 0.4514 4.6732 2.8983
WSB/EiJ f 2.1111 0.3981 2.8938 1.3285
WSB/EiJ m 3.25 0.4222 4.0801 2.4199


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ both 2.5295 0.309 3.1371 1.9219
A/J both 2.9845 0.3322 3.6377 2.3314
BALB/cByJ both 2.7857 0.3192 3.4132 2.1582
BTBR T+ Itpr3tf/J both 2.775 0.2986 3.362 2.188
BUB/BnJ both 2.9571 0.3496 3.6446 2.2697
C3H/HeJ both 3.1464 0.309 3.754 2.5388
C57BL/10J both 3.2021 0.2901 3.7725 2.6316
C57BL/6J both 3.6881 0.3322 4.3412 3.035
C57BLKS/J both 3.0437 0.2986 3.6307 2.4568
C57BR/cdJ both 3.225 0.2986 3.812 2.638
C57L/J both 3.4187 0.2986 4.0057 2.8318
CAST/EiJ both 2.7708 0.3225 3.4049 2.1368
CBA/J both 2.825 0.3225 3.459 2.191
DBA/2J both 2.292 0.309 2.8996 1.6844
FVB/NJ both 4.1187 0.2986 4.7057 3.5318
KK/HlJ both 3.3396 0.2887 3.9072 2.772
LP/J both 2.8607 0.309 3.4683 2.2531
MRL/MpJ both 3.8375 0.2986 4.4245 3.2505
NOD.B10Sn-H2b/J both 4.3187 0.2986 4.9057 3.7318
NON/ShiLtJ both 3.7024 0.3009 4.294 3.1107
NZO/HlLtJ both 2.65 0.3776 3.3925 1.9075
NZW/LacJ both 3.9063 0.2986 4.4932 3.3193
P/J both 2.25 0.412 3.0601 1.4399
PL/J both 4.277 0.3009 4.8686 3.6854
PWD/PhJ both 2.6688 0.2986 3.2557 2.0818
RIIIS/J both 2.2339 0.309 2.8415 1.6263
SJL/J both 3.9786 0.309 4.5862 3.371
SM/J both 3.125 0.2986 3.712 2.538
SWR/J both 3.7071 0.3192 4.3347 3.0796
WSB/EiJ both 2.6806 0.2901 3.251 2.1101




  GWAS USING LINEAR MIXED MODELS