Phenotype measure:   Peters4   pctRetic_M06

ID, description, units MPD:24381   pctRetic_M06   reticulocyte differential   [%]  at age 6mo
Data set, strains Peters4   inbred   30 strains     sex: both     age: 26wks
Procedure complete blood count
Ontology mappings

  STRAIN COMPARISON PLOT
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Peters4 - reticulocyte differential at age 6mo



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested30 strains30 strains
Mean of the strain means3.10   % 3.13   %
Median of the strain means3.00   % 3.17   %
SD of the strain means± 0.683 ± 0.564
Coefficient of variation (CV)0.220 0.180
Min–max range of strain means1.99   –   4.81   % 2.10   –   4.14   %
Mean sample size per strain7.6   mice 7.0   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 0.0183 0.0183 0.0249 0.8748
strain 29 131.1799 4.5234 6.1611 < 0.0001
sex:strain 29 36.6353 1.2633 1.7207 0.0129
Residuals 382 280.4608 0.7342


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ f 2.31 0.38   8 0.134 0.164 1.7, 2.9 -1.16
129S1/SvImJ m 2.4 0.249   11 0.0751 0.104 2.0, 2.8 -1.29
A/J f 2.44 0.532   5 0.238 0.218 1.9, 3.2 -0.97
A/J m 2.94 0.119   8 0.042 0.0404 2.8, 3.1 -0.33
BALB/cByJ f 2.37 0.207   6 0.0843 0.0873 2.0, 2.6 -1.07
BALB/cByJ m 3.1 0.537   8 0.19 0.173 2.3, 3.9 -0.05
BTBR T+ Itpr3tf/J f 2.6 0.646   8 0.228 0.248 1.2, 3.5 -0.73
BTBR T+ Itpr3tf/J m 2.74 0.334   8 0.118 0.122 2.2, 3.3 -0.68
BUB/BnJ f 3.05 0.487   8 0.172 0.16 2.2, 3.7 -0.07
BUB/BnJ m 3.24 0.465   7 0.176 0.143 2.6, 3.9 0.2
C3H/HeJ f 3.62 0.557   8 0.197 0.154 2.5, 4.3 0.76
C3H/HeJ m 3.45 0.466   8 0.165 0.135 2.9, 4.3 0.57
C57BL/10J f 2.88 0.413   8 0.146 0.144 2.1, 3.3 -0.32
C57BL/10J m 3.1 0.235   5 0.105 0.0757 2.9, 3.4 -0.05
C57BL/6J f 3.92 0.673   8 0.238 0.172 3.2, 5.4 1.2
C57BL/6J m 3.49 0.962   7 0.363 0.276 2.4, 5.5 0.65
C57BLKS/J f 3.02 1.01   8 0.357 0.334 1.5, 4.7 -0.12
C57BLKS/J m 3.09 0.168   7 0.0634 0.0543 2.8, 3.3 -0.06
C57BR/cdJ f 3.56 0.735   7 0.278 0.206 2.2, 4.5 0.67
C57BR/cdJ m 3.64 0.325   8 0.115 0.0893 3.1, 4.1 0.91
C57L/J f 3.46 0.404   7 0.153 0.117 2.9, 4.1 0.53
C57L/J m 3.25 0.233   8 0.0824 0.0717 2.8, 3.5 0.22
CAST/EiJ f 2.98 1.66   9 0.552 0.557 1.9, 7.3 -0.18
CAST/EiJ m 2.2 0.141   2   0.1 0.0643 2.1, 2.3 -1.64
CBA/J f 2.58 0.662   6 0.27 0.256 1.9, 3.8 -0.76
CBA/J m 2.35 0.185   8 0.0655 0.0788 2.1, 2.6 -1.38
DBA/2J f 2.39 0.825   7 0.312 0.346 1.4, 3.4 -1.04
DBA/2J m 4.06 2.55   5 1.14 0.627 2.3, 8.3 1.66
FVB/NJ f 3.42 0.941   8 0.333 0.275 2.2, 4.9 0.47
FVB/NJ m 3.42 0.482   5 0.215 0.141 2.8, 4.0 0.52
KK/HlJ f 3.73 0.437   6 0.178 0.117 3.2, 4.4 0.92
KK/HlJ m 2.91 0.645   8 0.228 0.221 2.4, 4.4 -0.38
LP/J f 2.55 0.653   6 0.267 0.256 1.7, 3.4 -0.81
LP/J m 3.4 0.316   7 0.12 0.093 3.0, 3.9 0.49
MRL/MpJ f 3.64 0.977   8 0.345 0.269 2.1, 5.6 0.79
MRL/MpJ m 3.64 0.167   5 0.0748 0.046 3.5, 3.9 0.91
NOD.B10Sn-H2b/J f 4.39 0.928   8 0.328 0.212 3.0, 6.1 1.89
NOD.B10Sn-H2b/J m 4.14 0.385   8 0.136 0.0931 3.4, 4.6 1.8
NON/ShiLtJ f 3.15 0.754   8 0.267 0.239 1.7, 4.2 0.07
NON/ShiLtJ m 3.28 0.426   6 0.174 0.13 2.5, 3.7 0.27
NZO/HlLtJ f 2.39 0.275   8 0.0972 0.115 2.0, 2.9 -1.04
NZO/HlLtJ m 2.92 0.791   6 0.323 0.271 2.2, 4.0 -0.37
NZW/LacJ f 4.07 0.688   8 0.243 0.169 3.3, 4.9 1.42
NZW/LacJ m 3.32 0.455   5 0.203 0.137 2.8, 3.8 0.34
P/J f 1.99 0.557   8 0.197 0.28 1.1, 2.8 -1.63
P/J m 2.23 0.25   7 0.0944 0.112 1.9, 2.7 -1.59
PL/J f 3.5 1.33   13 0.369 0.38 1.4, 7.1 0.59
PL/J m 2.48 0.158   8 0.0559 0.0639 2.3, 2.8 -1.15
PWD/PhJ f 2.89 0.482   8 0.171 0.167 2.2, 3.5 -0.31
PWD/PhJ m 2.86 0.27   7 0.102 0.0945 2.4, 3.2 -0.47
RIIIS/J f 2.39 0.432   8 0.153 0.181 2.0, 3.3 -1.04
RIIIS/J m 2.1 0.267   8 0.0945 0.127 1.8, 2.5 -1.82
SJL/J f 3.5 1.16   8 0.41 0.331 1.8, 5.1 0.59
SJL/J m 4.06 3.23   7 1.22 0.797 2.1, 11.1 1.66
SM/J f 2.65 0.418   6 0.171 0.158 2.2, 3.4 -0.66
SM/J m 3.65 1.79   8 0.633 0.491 2.4, 8.0 0.93
SWR/J f 4.81 1.62   8 0.573 0.337 1.1, 6.6 2.5
SWR/J m 3.68 0.271   8 0.0959 0.0738 3.3, 4.1 0.98
WSB/EiJ f 2.75 0.448   10 0.142 0.163 1.9, 3.5 -0.51
WSB/EiJ m 2.64 0.772   7 0.292 0.292 1.6, 3.5 -0.86


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ f 2.3125 0.3029 2.9081 1.7169
129S1/SvImJ m 2.4 0.2583 2.908 1.892
A/J f 2.44 0.3832 3.1934 1.6866
A/J m 2.9375 0.3029 3.5331 2.3419
BALB/cByJ f 2.3667 0.3498 3.0545 1.6789
BALB/cByJ m 3.1 0.3029 3.6956 2.5044
BTBR T+ Itpr3tf/J f 2.6 0.3029 3.1956 2.0044
BTBR T+ Itpr3tf/J m 2.7375 0.3029 3.3331 2.1419
BUB/BnJ f 3.05 0.3029 3.6456 2.4544
BUB/BnJ m 3.2429 0.3239 3.8796 2.6061
C3H/HeJ f 3.625 0.3029 4.2206 3.0294
C3H/HeJ m 3.45 0.3029 4.0456 2.8544
C57BL/10J f 2.875 0.3029 3.4706 2.2794
C57BL/10J m 3.1 0.3832 3.8534 2.3466
C57BL/6J f 3.925 0.3029 4.5206 3.3294
C57BL/6J m 3.4857 0.3239 4.1225 2.8489
C57BLKS/J f 3.025 0.3029 3.6206 2.4294
C57BLKS/J m 3.0857 0.3239 3.7225 2.4489
C57BR/cdJ f 3.5571 0.3239 4.1939 2.9204
C57BR/cdJ m 3.6375 0.3029 4.2331 3.0419
C57L/J f 3.4571 0.3239 4.0939 2.8204
C57L/J m 3.25 0.3029 3.8456 2.6544
CAST/EiJ f 2.9778 0.2856 3.5394 2.4162
CAST/EiJ m 2.2 0.6059 3.3913 1.0087
CBA/J f 2.5833 0.3498 3.2711 1.8955
CBA/J m 2.35 0.3029 2.9456 1.7544
DBA/2J f 2.3857 0.3239 3.0225 1.7489
DBA/2J m 4.06 0.3832 4.8134 3.3066
FVB/NJ f 3.425 0.3029 4.0206 2.8294
FVB/NJ m 3.42 0.3832 4.1734 2.6666
KK/HlJ f 3.7333 0.3498 4.4211 3.0455
KK/HlJ m 2.9125 0.3029 3.5081 2.3169
LP/J f 2.55 0.3498 3.2378 1.8622
LP/J m 3.4 0.3239 4.0368 2.7632
MRL/MpJ f 3.6375 0.3029 4.2331 3.0419
MRL/MpJ m 3.64 0.3832 4.3934 2.8866
NOD.B10Sn-H2b/J f 4.3875 0.3029 4.9831 3.7919
NOD.B10Sn-H2b/J m 4.1375 0.3029 4.7331 3.5419
NON/ShiLtJ f 3.15 0.3029 3.7456 2.5544
NON/ShiLtJ m 3.2833 0.3498 3.9711 2.5955
NZO/HlLtJ f 2.3875 0.3029 2.9831 1.7919
NZO/HlLtJ m 2.9167 0.3498 3.6045 2.2289
NZW/LacJ f 4.075 0.3029 4.6706 3.4794
NZW/LacJ m 3.32 0.3832 4.0734 2.5666
P/J f 1.9875 0.3029 2.5831 1.3919
P/J m 2.2286 0.3239 2.8653 1.5918
PL/J f 3.5 0.2376 3.9673 3.0327
PL/J m 2.475 0.3029 3.0706 1.8794
PWD/PhJ f 2.8875 0.3029 3.4831 2.2919
PWD/PhJ m 2.8571 0.3239 3.4939 2.2204
RIIIS/J f 2.3875 0.3029 2.9831 1.7919
RIIIS/J m 2.1 0.3029 2.6956 1.5044
SJL/J f 3.5 0.3029 4.0956 2.9044
SJL/J m 4.0571 0.3239 4.6939 3.4204
SM/J f 2.65 0.3498 3.3378 1.9622
SM/J m 3.65 0.3029 4.2456 3.0544
SWR/J f 4.8125 0.3029 5.4081 4.2169
SWR/J m 3.675 0.3029 4.2706 3.0794
WSB/EiJ f 2.75 0.271 3.2828 2.2172
WSB/EiJ m 2.6429 0.3239 3.2796 2.0061


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ both 2.3562 0.1991 2.7477 1.9648
A/J both 2.6887 0.2442 3.169 2.2085
BALB/cByJ both 2.7333 0.2314 3.1883 2.2784
BTBR T+ Itpr3tf/J both 2.6687 0.2142 3.0899 2.2476
BUB/BnJ both 3.1464 0.2217 3.5824 2.7105
C3H/HeJ both 3.5375 0.2142 3.9587 3.1163
C57BL/10J both 2.9875 0.2442 3.4677 2.5073
C57BL/6J both 3.7054 0.2217 4.1413 3.2694
C57BLKS/J both 3.0554 0.2217 3.4913 2.6194
C57BR/cdJ both 3.5973 0.2217 4.0333 3.1614
C57L/J both 3.3536 0.2217 3.7895 2.9176
CAST/EiJ both 2.5889 0.3349 3.2474 1.9304
CBA/J both 2.4667 0.2314 2.9216 2.0117
DBA/2J both 3.2229 0.2509 3.7161 2.7296
FVB/NJ both 3.4225 0.2442 3.9027 2.9423
KK/HlJ both 3.3229 0.2314 3.7778 2.868
LP/J both 2.975 0.2384 3.4436 2.5064
MRL/MpJ both 3.6387 0.2442 4.119 3.1585
NOD.B10Sn-H2b/J both 4.2625 0.2142 4.6837 3.8413
NON/ShiLtJ both 3.2167 0.2314 3.6716 2.7617
NZO/HlLtJ both 2.6521 0.2314 3.107 2.1972
NZW/LacJ both 3.6975 0.2442 4.1777 3.2173
P/J both 2.108 0.2217 2.544 1.6721
PL/J both 2.9875 0.1925 3.366 2.609
PWD/PhJ both 2.8723 0.2217 3.3083 2.4364
RIIIS/J both 2.2437 0.2142 2.6649 1.8226
SJL/J both 3.7786 0.2217 4.2145 3.3426
SM/J both 3.15 0.2314 3.6049 2.6951
SWR/J both 4.2437 0.2142 4.6649 3.8226
WSB/EiJ both 2.6964 0.2111 3.1116 2.2813




  GWAS USING LINEAR MIXED MODELS