Phenotype measure:   Peters4   Retic_M12

ID, description, units MPD:24378   Retic_M12   reticulocyte count (Retic)   [n/L]  at age 12mo
Data set, strains Peters4   inbred   30 strains     sex: both     age: 52wks
Procedure complete blood count
Ontology mappings

  STRAIN COMPARISON PLOT
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Peters4 - reticulocyte count (Retic) at age 12mo



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested30 strains30 strains
Mean of the strain means319   n/L 325   n/L
Median of the strain means304   n/L 324   n/L
SD of the strain means± 55.1 ± 60.1
Coefficient of variation (CV)0.173 0.185
Min–max range of strain means226   –   450   n/L 215   –   457   n/L
Mean sample size per strain7.8   mice 7.2   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 14640.0113 14640.0113 1.6479 0.2
strain 29 1150045.726 39656.7492 4.4637 < 0.0001
sex:strain 29 300653.9837 10367.3787 1.1669 0.2557
Residuals 388 3447098.9932 8884.2758


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ f 276.0 44.0   8 15.6 0.16 212.0, 335.0 -0.78
129S1/SvImJ m 299.0 34.4   7 13.0 0.115 248.0, 339.0 -0.43
A/J f 297.0 55.4   7 21.0 0.187 224.0, 376.0 -0.4
A/J m 292.0 56.0   6 22.9 0.192 232.0, 356.0 -0.55
BALB/cByJ f 314.0 46.3   7 17.5 0.147 257.0, 392.0 -0.09
BALB/cByJ m 302.0 29.3   7 11.1 0.097 250.0, 330.0 -0.38
BTBR T+ Itpr3tf/J f 264.0 47.5   8 16.8 0.18 217.0, 370.0 -1.0
BTBR T+ Itpr3tf/J m 250.0 88.8   8 31.4 0.355 138.0, 451.0 -1.25
BUB/BnJ f 310.0 45.3   7 17.1 0.146 242.0, 356.0 -0.16
BUB/BnJ m 281.0 21.9   5 9.82 0.0781 243.0, 298.0 -0.73
C3H/HeJ f 288.0 31.6   8 11.2 0.11 221.0, 320.0 -0.56
C3H/HeJ m 288.0 60.5   7 22.8 0.21 239.0, 415.0 -0.62
C57BL/10J f 363.0 74.0   9 24.7 0.204 248.0, 460.0 0.8
C57BL/10J m 331.0 26.9   8 9.53 0.0813 291.0, 375.0 0.1
C57BL/6J f 391.0 77.7   7 29.4 0.198 314.0, 554.0 1.31
C57BL/6J m 382.0 44.6   6 18.2 0.117 310.0, 441.0 0.95
C57BLKS/J f 350.0 64.9   8 23.0 0.186 272.0, 491.0 0.56
C57BLKS/J m 306.0 50.7   8 17.9 0.166 262.0, 415.0 -0.32
C57BR/cdJ f 356.0 59.2   8 20.9 0.166 283.0, 468.0 0.67
C57BR/cdJ m 358.0 35.3   8 12.5 0.0985 301.0, 406.0 0.55
C57L/J f 334.0 57.2   8 20.2 0.171 255.0, 392.0 0.27
C57L/J m 374.0 41.7   8 14.7 0.112 319.0, 432.0 0.81
CAST/EiJ f 290.0 43.0   8 15.2 0.148 214.0, 358.0 -0.53
CAST/EiJ m 343.0 125.0   6 51.1 0.364 256.0, 584.0 0.3
CBA/J f 295.0 19.2   8 6.78 0.0651 267.0, 326.0 -0.44
CBA/J m 229.0 48.4   6 19.8 0.211 173.0, 308.0 -1.6
DBA/2J f 278.0 100.0   8 35.4 0.361 139.0, 420.0 -0.74
DBA/2J m 225.0 88.8   7 33.6 0.395 133.0, 406.0 -1.67
FVB/NJ f 398.0 138.0   8 48.8 0.347 200.0, 655.0 1.43
FVB/NJ m 375.0 64.7   8 22.9 0.173 237.0, 435.0 0.83
KK/HlJ f 302.0 93.5   7 35.4 0.31 150.0, 441.0 -0.31
KK/HlJ m 354.0 82.7   11 24.9 0.234 260.0, 562.0 0.48
LP/J f 265.0 82.4   8 29.1 0.311 177.0, 429.0 -0.98
LP/J m 317.0 156.0   7 59.0 0.492 194.0, 662.0 -0.13
MRL/MpJ f 384.0 116.0   8 41.1 0.303 124.0, 491.0 1.18
MRL/MpJ m 389.0 34.7   8 12.3 0.0892 350.0, 442.0 1.06
NOD.B10Sn-H2b/J f 450.0 96.2   8 34.0 0.214 359.0, 619.0 2.38
NOD.B10Sn-H2b/J m 377.0 26.5   8 9.37 0.0703 340.0, 416.0 0.86
NON/ShiLtJ f 348.0 90.0   9 30.0 0.259 212.0, 547.0 0.53
NON/ShiLtJ m 378.0 52.2   7 19.7 0.138 269.0, 428.0 0.88
NZO/HlLtJ f 286.0 9.73   5 4.35 0.034 275.0, 301.0 -0.6
NZO/HlLtJ m 281.0 109.0   5 48.9 0.389 190.0, 463.0 -0.73
NZW/LacJ f 386.0 64.9   8 22.9 0.168 286.0, 477.0 1.21
NZW/LacJ m 304.0 21.2   8 7.5 0.0697 274.0, 333.0 -0.35
P/J f 264.0 49.3   7 18.6 0.187 172.0, 318.0 -1.0
P/J m 251.0 21.1   3 12.2 0.0841 229.0, 271.0 -1.23
PL/J f 403.0 78.4   7 29.6 0.195 282.0, 513.0 1.52
PL/J m 457.0 344.0   9 115.0 0.753 243.0, 1363.0 2.2
PWD/PhJ f 301.0 55.2   8 19.5 0.183 218.0, 402.0 -0.33
PWD/PhJ m 293.0 39.3   8 13.9 0.134 239.0, 355.0 -0.53
RIIIS/J f 234.0 38.5   8 13.6 0.164 198.0, 307.0 -1.54
RIIIS/J m 215.0 36.4   7 13.8 0.17 165.0, 272.0 -1.83
SJL/J f 305.0 110.0   7 41.5 0.36 195.0, 520.0 -0.25
SJL/J m 434.0 261.0   8 92.4 0.601 235.0, 1064.0 1.81
SM/J f 257.0 62.2   8 22.0 0.242 172.0, 382.0 -1.13
SM/J m 339.0 115.0   8 40.7 0.34 254.0, 615.0 0.23
SWR/J f 356.0 94.4   7 35.7 0.265 239.0, 479.0 0.67
SWR/J m 376.0 71.6   7 27.1 0.191 287.0, 474.0 0.85
WSB/EiJ f 226.0 71.3   9 23.8 0.316 152.0, 340.0 -1.69
WSB/EiJ m 352.0 156.0   8 55.1 0.442 242.0, 697.0 0.45


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ f 275.5 33.3247 341.0196 209.9804
129S1/SvImJ m 298.5714 35.6256 368.6148 228.5281
A/J f 296.7143 35.6256 366.7576 226.6709
A/J m 292.1667 38.48 367.8221 216.5112
BALB/cByJ f 314.1429 35.6256 384.1862 244.0995
BALB/cByJ m 302.0 35.6256 372.0433 231.9567
BTBR T+ Itpr3tf/J f 264.0 33.3247 329.5196 198.4804
BTBR T+ Itpr3tf/J m 250.25 33.3247 315.7696 184.7304
BUB/BnJ f 310.1429 35.6256 380.1862 240.0995
BUB/BnJ m 281.2 42.1528 364.0764 198.3236
C3H/HeJ f 288.125 33.3247 353.6446 222.6054
C3H/HeJ m 287.8571 35.6256 357.9005 217.8138
C57BL/10J f 362.6667 31.4188 424.4391 300.8942
C57BL/10J m 331.375 33.3247 396.8946 265.8554
C57BL/6J f 391.4286 35.6256 461.4719 321.3852
C57BL/6J m 381.6667 38.48 457.3221 306.0112
C57BLKS/J f 349.875 33.3247 415.3946 284.3554
C57BLKS/J m 305.875 33.3247 371.3946 240.3554
C57BR/cdJ f 356.125 33.3247 421.6446 290.6054
C57BR/cdJ m 358.25 33.3247 423.7696 292.7304
C57L/J f 334.25 33.3247 399.7696 268.7304
C57L/J m 373.875 33.3247 439.3946 308.3554
CAST/EiJ f 289.75 33.3247 355.2696 224.2304
CAST/EiJ m 343.3333 38.48 418.9888 267.6779
CBA/J f 294.75 33.3247 360.2696 229.2304
CBA/J m 229.3333 38.48 304.9888 153.6779
DBA/2J f 277.625 33.3247 343.1446 212.1054
DBA/2J m 224.7143 35.6256 294.7576 154.6709
FVB/NJ f 398.5 33.3247 464.0196 332.9804
FVB/NJ m 375.0 33.3247 440.5196 309.4804
KK/HlJ f 301.5714 35.6256 371.6148 231.5281
KK/HlJ m 354.0909 28.4194 409.9662 298.2156
LP/J f 264.625 33.3247 330.1446 199.1054
LP/J m 317.1429 35.6256 387.1862 247.0995
MRL/MpJ f 383.75 33.3247 449.2696 318.2304
MRL/MpJ m 388.75 33.3247 454.2696 323.2304
NOD.B10Sn-H2b/J f 449.5 33.3247 515.0196 383.9804
NOD.B10Sn-H2b/J m 377.25 33.3247 442.7696 311.7304
NON/ShiLtJ f 348.0 31.4188 409.7724 286.2276
NON/ShiLtJ m 377.5714 35.6256 447.6148 307.5281
NZO/HlLtJ f 285.8 42.1528 368.6764 202.9236
NZO/HlLtJ m 281.0 42.1528 363.8764 198.1236
NZW/LacJ f 386.5 33.3247 452.0196 320.9804
NZW/LacJ m 304.375 33.3247 369.8946 238.8554
P/J f 263.7143 35.6256 333.7576 193.6709
P/J m 251.3333 54.419 358.3263 144.3403
PL/J f 402.8571 35.6256 472.9005 332.8138
PL/J m 456.7778 31.4188 518.5502 395.0053
PWD/PhJ f 301.25 33.3247 366.7696 235.7304
PWD/PhJ m 292.75 33.3247 358.2696 227.2304
RIIIS/J f 234.125 33.3247 299.6446 168.6054
RIIIS/J m 214.8571 35.6256 284.9005 144.8138
SJL/J f 305.2857 35.6256 375.3291 235.2424
SJL/J m 434.5 33.3247 500.0196 368.9804
SM/J f 257.125 33.3247 322.6446 191.6054
SM/J m 338.75 33.3247 404.2696 273.2304
SWR/J f 355.5714 35.6256 425.6148 285.5281
SWR/J m 376.0 35.6256 446.0433 305.9567
WSB/EiJ f 226.0 31.4188 287.7724 164.2276
WSB/EiJ m 352.375 33.3247 417.8946 286.8554


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ both 287.0357 24.3912 334.9911 239.0803
A/J both 294.4405 26.2197 345.991 242.89
BALB/cByJ both 308.0714 25.1911 357.5996 258.5433
BTBR T+ Itpr3tf/J both 257.125 23.5641 303.4543 210.7957
BUB/BnJ both 295.6714 27.5955 349.9268 241.4161
C3H/HeJ both 287.9911 24.3912 335.9465 240.0357
C57BL/10J both 347.0208 22.9002 392.0448 301.9968
C57BL/6J both 386.5476 26.2197 438.0981 334.9971
C57BLKS/J both 327.875 23.5641 374.2043 281.5457
C57BR/cdJ both 357.1875 23.5641 403.5168 310.8582
C57L/J both 354.0625 23.5641 400.3918 307.7332
CAST/EiJ both 316.5417 25.4521 366.5831 266.5003
CBA/J both 262.0417 25.4521 312.0831 212.0003
DBA/2J both 251.1696 24.3912 299.125 203.2142
FVB/NJ both 386.75 23.5641 433.0793 340.4207
KK/HlJ both 327.8312 22.7862 372.631 283.0313
LP/J both 290.8839 24.3912 338.8393 242.9285
MRL/MpJ both 386.25 23.5641 432.5793 339.9207
NOD.B10Sn-H2b/J both 413.375 23.5641 459.7043 367.0457
NON/ShiLtJ both 362.7857 23.7504 409.4813 316.0901
NZO/HlLtJ both 283.4 29.8065 342.0025 224.7975
NZW/LacJ both 345.4375 23.5641 391.7668 299.1082
P/J both 257.5238 32.5216 321.4643 193.5833
PL/J both 429.8175 23.7504 476.513 383.1219
PWD/PhJ both 297.0 23.5641 343.3293 250.6707
RIIIS/J both 224.4911 24.3912 272.4465 176.5357
SJL/J both 369.8929 24.3912 417.8483 321.9375
SM/J both 297.9375 23.5641 344.2668 251.6082
SWR/J both 365.7857 25.1911 415.3138 316.2576
WSB/EiJ both 289.1875 22.9002 334.2115 244.1635




  GWAS USING LINEAR MIXED MODELS