Project measure / variable:   Peters4   pctHCT_M06

ID, description, units MPD:24357   pctHCT_M06   hematocrit (HCT)   [%]  at age 6mo  
Data set, strains Peters4   inbred   30 strains     sex: both     age: 26wks
Procedure complete blood count
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  STRAIN COMPARISON PLOT
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Peters4 - hematocrit (HCT) at age 6mo



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested30 strains30 strains
Mean of the strain means47.9   % 48.1   %
Median of the strain means47.6   % 49.0   %
SD of the strain means± 2.88 ± 3.85
Coefficient of variation (CV)0.0601 0.0799
Min–max range of strain means42.6   –   54.4   % 39.2   –   53.8   %
Mean sample size per strain7.7   mice 7.1   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 15.7419 15.7419 2.5402 0.1118
strain 29 3771.9939 130.0688 20.9884 < 0.0001
sex:strain 29 1111.2352 38.3185 6.1832 < 0.0001
Residuals 387 2398.3072 6.1972


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
Select table page:
Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ f 47.2 1.33   8 0.471 0.0282 45.3, 49.1 -0.23
129S1/SvImJ m 51.1 0.957   11 0.289 0.0187 49.1, 52.1 0.77
A/J f 47.9 1.76   5 0.786 0.0367 45.9, 50.3 0.01
A/J m 42.5 1.42   8 0.504 0.0335 40.9, 45.0 -1.46
BALB/cByJ f 49.2 1.29   6 0.528 0.0263 47.3, 50.9 0.46
BALB/cByJ m 47.8 3.13   8 1.11 0.0654 43.6, 52.2 -0.09
BTBR T+ Itpr3tf/J f 44.7 2.96   8 1.05 0.0662 37.8, 47.0 -1.1
BTBR T+ Itpr3tf/J m 45.1 1.46   8 0.517 0.0324 42.5, 46.4 -0.79
BUB/BnJ f 46.5 2.08   8 0.736 0.0448 43.3, 49.6 -0.47
BUB/BnJ m 52.1 1.91   7 0.723 0.0367 50.2, 55.1 1.03
C3H/HeJ f 44.1 1.57   8 0.556 0.0357 42.0, 46.3 -1.31
C3H/HeJ m 43.2 1.12   8 0.396 0.0259 41.8, 45.1 -1.28
C57BL/10J f 47.4 1.64   8 0.578 0.0345 45.2, 50.2 -0.16
C57BL/10J m 48.8 3.73   5 1.67 0.0764 45.3, 54.8 0.17
C57BL/6J f 50.3 1.48   8 0.522 0.0294 48.2, 52.3 0.85
C57BL/6J m 47.9 3.41   7 1.29 0.0712 44.5, 53.1 -0.06
C57BLKS/J f 50.0 1.54   8 0.544 0.0308 47.9, 52.6 0.74
C57BLKS/J m 49.1 1.44   7 0.544 0.0293 46.6, 51.2 0.25
C57BR/cdJ f 51.4 0.689   7 0.26 0.0134 50.5, 52.4 1.23
C57BR/cdJ m 53.8 1.48   8 0.525 0.0276 52.3, 56.7 1.47
C57L/J f 47.0 5.8   8 2.05 0.123 33.0, 50.3 -0.3
C57L/J m 51.4 2.07   8 0.73 0.0402 49.0, 55.4 0.85
CAST/EiJ f 46.0 2.13   10 0.672 0.0462 41.9, 48.8 -0.65
CAST/EiJ m 49.4 0.424   2   0.3 0.00859 49.1, 49.7 0.33
CBA/J f 44.4 1.7   6 0.694 0.0383 41.4, 45.9 -1.2
CBA/J m 42.3 1.51   8 0.535 0.0358 39.8, 44.8 -1.52
DBA/2J f 44.3 1.47   7 0.556 0.0332 41.6, 46.2 -1.24
DBA/2J m 47.3 0.869   6 0.355 0.0184 46.5, 48.7 -0.22
FVB/NJ f 44.4 2.21   8 0.78 0.0496 41.1, 47.7 -1.2
FVB/NJ m 39.2 2.34   5 1.05 0.0597 36.6, 42.6 -2.32
KK/HlJ f 47.9 2.2   6 0.898 0.0459 45.1, 51.3 0.01
KK/HlJ m 52.8 3.93   8 1.39 0.0744 46.0, 57.2 1.21
LP/J f 50.3 1.1   6 0.449 0.0219 49.1, 52.3 0.85
LP/J m 45.7 1.97   7 0.745 0.0431 43.9, 48.7 -0.63
MRL/MpJ f 42.6 3.55   8 1.26 0.0833 36.4, 47.7 -1.83
MRL/MpJ m 47.4 1.84   5 0.821 0.0387 45.6, 49.4 -0.19
NOD.B10Sn-H2b/J f 50.0 1.17   8 0.413 0.0233 48.6, 52.1 0.74
NOD.B10Sn-H2b/J m 52.0 1.82   8 0.642 0.035 48.6, 55.2 1.0
NON/ShiLtJ f 46.0 2.28   8 0.807 0.0496 43.1, 49.2 -0.65
NON/ShiLtJ m 52.6 2.86   6 1.17 0.0544 48.8, 55.8 1.16
NZO/HlLtJ f 47.1 1.4   8 0.496 0.0298 45.1, 49.1 -0.27
NZO/HlLtJ m 44.2 6.58   6 2.69 0.149 35.3, 54.0 -1.02
NZW/LacJ f 46.0 0.964   8 0.341 0.021 44.9, 47.5 -0.65
NZW/LacJ m 43.9 0.976   5 0.436 0.0222 42.7, 45.2 -1.1
P/J f 52.1 2.55   8 0.903 0.049 49.2, 56.8 1.47
P/J m 53.1 3.56   8 1.26 0.067 45.4, 56.8 1.29
PL/J f 49.1 5.66   13 1.57 0.115 35.3, 58.7 0.43
PL/J m 49.9 1.79   8 0.632 0.0358 48.0, 52.5 0.46
PWD/PhJ f 51.1 1.19   8 0.42 0.0233 49.0, 52.9 1.12
PWD/PhJ m 51.0 1.61   7 0.607 0.0315 47.9, 52.5 0.74
RIIIS/J f 52.1 1.84   8 0.65 0.0353 49.6, 55.3 1.47
RIIIS/J m 50.6 0.97   8 0.343 0.0191 49.1, 52.3 0.64
SJL/J f 48.6 1.41   8 0.498 0.029 46.5, 50.3 0.25
SJL/J m 45.0 2.62   8 0.927 0.0583 41.2, 47.9 -0.82
SM/J f 44.8 3.07   6 1.25 0.0685 42.4, 50.2 -1.07
SM/J m 43.8 1.78   8 0.629 0.0406 40.2, 45.8 -1.13
SWR/J f 54.4 2.95   8 1.04 0.0542 49.1, 57.9 2.27
SWR/J m 50.9 2.65   8 0.938 0.0521 46.6, 54.2 0.72
WSB/EiJ f 49.1 1.37   10 0.434 0.028 47.1, 51.4 0.43
WSB/EiJ m 50.2 2.35   7 0.887 0.0467 47.4, 54.4 0.54


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ f 47.225 0.8801 48.9555 45.4945
129S1/SvImJ m 51.0818 0.7506 52.5576 49.6061
A/J f 47.92 1.1133 50.1089 45.7311
A/J m 42.5 0.8801 44.2305 40.7695
BALB/cByJ f 49.2167 1.0163 51.2148 47.2185
BALB/cByJ m 47.7625 0.8801 49.493 46.032
BTBR T+ Itpr3tf/J f 44.7375 0.8801 46.468 43.007
BTBR T+ Itpr3tf/J m 45.0875 0.8801 46.818 43.357
BUB/BnJ f 46.475 0.8801 48.2055 44.7445
BUB/BnJ m 52.1143 0.9409 53.9642 50.2644
C3H/HeJ f 44.1375 0.8801 45.868 42.407
C3H/HeJ m 43.2 0.8801 44.9305 41.4695
C57BL/10J f 47.375 0.8801 49.1055 45.6445
C57BL/10J m 48.76 1.1133 50.9489 46.5711
C57BL/6J f 50.275 0.8801 52.0055 48.5445
C57BL/6J m 47.8571 0.9409 49.7071 46.0072
C57BLKS/J f 49.95 0.8801 51.6805 48.2195
C57BLKS/J m 49.0714 0.9409 50.9214 47.2215
C57BR/cdJ f 51.4143 0.9409 53.2642 49.5644
C57BR/cdJ m 53.75 0.8801 55.4805 52.0195
C57L/J f 47.025 0.8801 48.7555 45.2945
C57L/J m 51.3625 0.8801 53.093 49.632
CAST/EiJ f 46.01 0.7872 47.5578 44.4622
CAST/EiJ m 49.4 1.7603 52.8609 45.9391
CBA/J f 44.4167 1.0163 46.4148 42.4185
CBA/J m 42.325 0.8801 44.0555 40.5945
DBA/2J f 44.3 0.9409 46.1499 42.4501
DBA/2J m 47.3 1.0163 49.2982 45.3018
FVB/NJ f 44.425 0.8801 46.1555 42.6945
FVB/NJ m 39.2 1.1133 41.3889 37.0111
KK/HlJ f 47.9333 1.0163 49.9315 45.9352
KK/HlJ m 52.8125 0.8801 54.543 51.082
LP/J f 50.3167 1.0163 52.3148 48.3185
LP/J m 45.7143 0.9409 47.5642 43.8644
MRL/MpJ f 42.6375 0.8801 44.368 40.907
MRL/MpJ m 47.44 1.1133 49.6289 45.2511
NOD.B10Sn-H2b/J f 50.0375 0.8801 51.768 48.307
NOD.B10Sn-H2b/J m 51.9625 0.8801 53.693 50.232
NON/ShiLtJ f 45.9875 0.8801 47.718 44.257
NON/ShiLtJ m 52.65 1.0163 54.6482 50.6518
NZO/HlLtJ f 47.1 0.8801 48.8305 45.3695
NZO/HlLtJ m 44.2167 1.0163 46.2148 42.2185
NZW/LacJ f 46.0125 0.8801 47.743 44.282
NZW/LacJ m 43.88 1.1133 46.0689 41.6911
P/J f 52.15 0.8801 53.8805 50.4195
P/J m 53.0625 0.8801 54.793 51.332
PL/J f 49.1 0.6904 50.4575 47.7425
PL/J m 49.8625 0.8801 51.593 48.132
PWD/PhJ f 51.0625 0.8801 52.793 49.332
PWD/PhJ m 50.9571 0.9409 52.8071 49.1072
RIIIS/J f 52.0875 0.8801 53.818 50.357
RIIIS/J m 50.65 0.8801 52.3805 48.9195
SJL/J f 48.625 0.8801 50.3555 46.8945
SJL/J m 44.9625 0.8801 46.693 43.232
SM/J f 44.75 1.0163 46.7482 42.7518
SM/J m 43.825 0.8801 45.5555 42.0945
SWR/J f 54.425 0.8801 56.1555 52.6945
SWR/J m 50.9125 0.8801 52.643 49.182
WSB/EiJ f 49.05 0.7872 50.5978 47.5022
WSB/EiJ m 50.2429 0.9409 52.0928 48.3929


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ both 49.1534 0.5784 50.2905 48.0163
A/J both 45.21 0.7096 46.6051 43.8149
BALB/cByJ both 48.4896 0.6722 49.8112 47.1679
BTBR T+ Itpr3tf/J both 44.9125 0.6224 46.1361 43.6889
BUB/BnJ both 49.2946 0.6442 50.5612 48.0281
C3H/HeJ both 43.6687 0.6224 44.8924 42.4451
C57BL/10J both 48.0675 0.7096 49.4626 46.6724
C57BL/6J both 49.0661 0.6442 50.3326 47.7995
C57BLKS/J both 49.5107 0.6442 50.7773 48.2442
C57BR/cdJ both 52.5821 0.6442 53.8487 51.3156
C57L/J both 49.1937 0.6224 50.4174 47.9701
CAST/EiJ both 47.705 0.9641 49.6006 45.8094
CBA/J both 43.3708 0.6722 44.6925 42.0492
DBA/2J both 45.8 0.6925 47.1615 44.4385
FVB/NJ both 41.8125 0.7096 43.2076 40.4174
KK/HlJ both 50.3729 0.6722 51.6946 49.0513
LP/J both 48.0155 0.6925 49.377 46.654
MRL/MpJ both 45.0387 0.7096 46.4339 43.6436
NOD.B10Sn-H2b/J both 51.0 0.6224 52.2236 49.7764
NON/ShiLtJ both 49.3187 0.6722 50.6404 47.9971
NZO/HlLtJ both 45.6583 0.6722 46.98 44.3367
NZW/LacJ both 44.9462 0.7096 46.3414 43.5511
P/J both 52.6062 0.6224 53.8299 51.3826
PL/J both 49.4812 0.5593 50.5809 48.3816
PWD/PhJ both 51.0098 0.6442 52.2764 49.7433
RIIIS/J both 51.3687 0.6224 52.5924 50.1451
SJL/J both 46.7937 0.6224 48.0174 45.5701
SM/J both 44.2875 0.6722 45.6092 42.9658
SWR/J both 52.6687 0.6224 53.8924 51.4451
WSB/EiJ both 49.6464 0.6134 50.8524 48.4404




  GWAS USING LINEAR MIXED MODELS