Phenotype measure:   Peters4   pctBASO_M18

ID, description, units MPD:24351   pctBASO_M18   basophil differential (BASO; percentage of total WBC)   [%]  at age 18mo
Data set, strains Peters4   inbred   30 strains     sex: both     age: 78wks
Procedure complete blood count
Ontology mappings

  STRAIN COMPARISON PLOT
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Peters4 - basophil differential (BASO; percentage of total WBC) at age 18mo



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested28 strains29 strains
Mean of the strain means0.466   % 0.331   %
Median of the strain means0.450   % 0.333   %
SD of the strain means± 0.186 ± 0.0925
Coefficient of variation (CV)0.400 0.280
Min–max range of strain means0.217   –   0.930   % 0.171   –   0.543   %
Mean sample size per strain7.0   mice 7.7   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 2.4054 2.4054 35.8865 < 0.0001
strain 26 5.9662 0.2295 3.4235 < 0.0001
sex:strain 26 2.5382 0.0976 1.4565 0.0726
Residuals 334 22.3871 0.067


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ f 0.35 0.193   8 0.0681 0.551 -0.62
129S1/SvImJ m 0.3 0.0577   7 0.0218 0.192 0.2, 0.4 -0.33
A/J f 0.6 0.1   7 0.0378 0.167 0.5, 0.8 0.72
A/J m 0.38 0.218   15 0.0562 0.573 0.1, 1.0 0.53
BALB/cByJ f 0.925 0.919   8 0.325 0.994 0.3, 3.1 2.47
BALB/cByJ m 0.3 0.129   7 0.0488 0.43 0.1, 0.5 -0.33
BTBR T+ Itpr3tf/J f 0.25 0.0535   8 0.0189 0.214 0.2, 0.3 -1.16
BTBR T+ Itpr3tf/J m 0.25 0.0837   6 0.0342 0.335 0.1, 0.3 -0.87
BUB/BnJ f 0.42 0.148   5 0.0663 0.353 0.2, 0.6 -0.24
BUB/BnJ m 0.333 0.121   6 0.0494 0.363 0.2, 0.5 0.02
C3H/HeJ f 0.371 0.125   7 0.0474 0.337 0.2, 0.6 -0.51
C3H/HeJ m 0.262 0.0744   8 0.0263 0.283 0.2, 0.4 -0.74
C57BL/10J f 0.586 0.219   7 0.0829 0.374 0.3, 0.9 0.65
C57BL/10J m 0.438 0.112   13 0.0311 0.256 0.3, 0.7 1.16
C57BL/6J f 0.329 0.138   7 0.0522 0.42 0.2, 0.5 -0.73
C57BL/6J m 0.371 0.198   7 0.0747 0.532 0.2, 0.8 0.44
C57BLKS/J m 0.363 0.0885   16 0.0221 0.244 0.2, 0.5 0.35
C57BR/cdJ f 0.587 0.295   8 0.104 0.502 0.3, 1.0 0.65
C57BR/cdJ m 0.512 0.0641   8 0.0227 0.125 0.4, 0.6 1.96
C57L/J f 0.457 0.181   7 0.0685 0.397 0.2, 0.7 -0.05
C57L/J m 0.429 0.125   7 0.0474 0.292 0.2, 0.5 1.06
CAST/EiJ f 0.263 0.0518   8 0.0183 0.197 0.2, 0.3 -1.09
CBA/J f 0.25 0.0707   2   0.05 0.283 0.2, 0.3 -1.16
CBA/J m 0.22 0.0837   5 0.0374 0.38 0.1, 0.3 -1.2
DBA/2J f 0.4 0.167   6 0.0683 0.418 0.2, 0.6 -0.35
DBA/2J m 0.3 0.0894   6 0.0365 0.298 0.2, 0.4 -0.33
FVB/NJ f 0.486 0.195   7 0.0738 0.402 0.3, 0.9 0.11
FVB/NJ m 0.217 0.127   12 0.0366 0.585 -1.23
KK/HlJ f 0.217 0.0983   6 0.0401 0.454 0.1, 0.3 -1.33
KK/HlJ m 0.257 0.0976   7 0.0369 0.38 0.1, 0.4 -0.8
LP/J m 0.45 0.0756   8 0.0267 0.168 0.4, 0.6 1.29
MRL/MpJ f 0.5 0.58   7 0.219 1.16 0.2, 1.8 0.18
MRL/MpJ m 0.425 0.198   8 0.0701 0.466 0.1, 0.7 1.02
NOD.B10Sn-H2b/J f 0.586 0.107   7 0.0404 0.183 0.4, 0.7 0.65
NOD.B10Sn-H2b/J m 0.543 0.127   7 0.0481 0.234 0.4, 0.7 2.29
NON/ShiLtJ f 0.4 0.173   5 0.0775 0.433 0.3, 0.7 -0.35
NON/ShiLtJ m 0.171 0.0756   7 0.0286 0.441 0.1, 0.3 -1.73
NZO/HlLtJ f 0.93 0.718   10 0.227 0.772 0.2, 2.5 2.49
NZO/HlLtJ m 0.35 0.0707   2   0.05 0.202 0.3, 0.4 0.21
NZW/LacJ f 0.443 0.251   7 0.0948 0.566 0.3, 1.0 -0.12
NZW/LacJ m 0.25 0.0548   6 0.0224 0.219 0.2, 0.3 -0.87
P/J f 0.7 0.616   7 0.233 0.881 0.2, 2.0 1.26
P/J m 0.38 0.0837   5 0.0374 0.22 0.3, 0.5 0.53
PL/J f 0.487 0.217   8 0.0766 0.445 0.2, 0.7 0.11
PL/J m 0.35 0.321   8 0.113 0.916 0.21
PWD/PhJ f 0.283 0.0753   6 0.0307 0.266 0.2, 0.4 -0.98
PWD/PhJ m 0.214 0.0378   7 0.0143 0.176 0.2, 0.3 -1.26
RIIIS/J f 0.275 0.104   8 0.0366 0.376 0.1, 0.4 -1.02
RIIIS/J m 0.325 0.104   8 0.0366 0.318 0.2, 0.5 -0.06
SJL/J f 0.629 0.298   7 0.113 0.475 0.2, 1.0 0.88
SJL/J m 0.2 0.115   4 0.0577 0.577 0.1, 0.3 -1.41
SM/J f 0.467 0.216   6 0.0882 0.463 0.3, 0.9 0.01
SM/J m 0.344 0.113   9 0.0377 0.328 0.2, 0.6 0.14
SWR/J f 0.571 0.214   7 0.0808 0.374 0.2, 0.9 0.57
SWR/J m 0.3 0.0926   8 0.0327 0.309 0.2, 0.4 -0.33
WSB/EiJ f 0.275 0.0707   8 0.025 0.257 0.2, 0.4 -1.02
WSB/EiJ m 0.356 0.113   9 0.0377 0.318 0.2, 0.6 0.27


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ f 0.35 0.0915 0.5301 0.1699
129S1/SvImJ m 0.3 0.0979 0.4925 0.1075
A/J f 0.6 0.0979 0.7925 0.4075
A/J m 0.38 0.0668 0.5115 0.2485
BALB/cByJ f 0.925 0.0915 1.1051 0.7449
BALB/cByJ m 0.3 0.0979 0.4925 0.1075
BTBR T+ Itpr3tf/J f 0.25 0.0915 0.4301 0.0699
BTBR T+ Itpr3tf/J m 0.25 0.1057 0.4579 0.0421
BUB/BnJ f 0.42 0.1158 0.6478 0.1922
BUB/BnJ m 0.3333 0.1057 0.5412 0.1254
C3H/HeJ f 0.3714 0.0979 0.5639 0.1789
C3H/HeJ m 0.2625 0.0915 0.4426 0.0824
C57BL/10J f 0.5857 0.0979 0.7782 0.3932
C57BL/10J m 0.4385 0.0718 0.5797 0.2972
C57BL/6J f 0.3286 0.0979 0.5211 0.1361
C57BL/6J m 0.3714 0.0979 0.5639 0.1789
C57BR/cdJ f 0.5875 0.0915 0.7676 0.4074
C57BR/cdJ m 0.5125 0.0915 0.6926 0.3324
C57L/J f 0.4571 0.0979 0.6496 0.2647
C57L/J m 0.4286 0.0979 0.6211 0.2361
CBA/J f 0.25 0.1831 0.6101 0.0
CBA/J m 0.22 0.1158 0.4478 0.0
DBA/2J f 0.4 0.1057 0.6079 0.1921
DBA/2J m 0.3 0.1057 0.5079 0.0921
FVB/NJ f 0.4857 0.0979 0.6782 0.2932
FVB/NJ m 0.2167 0.0747 0.3637 0.0697
KK/HlJ f 0.2167 0.1057 0.4246 0.0088
KK/HlJ m 0.2571 0.0979 0.4496 0.0647
MRL/MpJ f 0.5 0.0979 0.6925 0.3075
MRL/MpJ m 0.425 0.0915 0.6051 0.2449
NOD.B10Sn-H2b/J f 0.5857 0.0979 0.7782 0.3932
NOD.B10Sn-H2b/J m 0.5429 0.0979 0.7353 0.3504
NON/ShiLtJ f 0.4 0.1158 0.6278 0.1722
NON/ShiLtJ m 0.1714 0.0979 0.3639 0.0
NZO/HlLtJ f 0.93 0.0819 1.091 0.769
NZO/HlLtJ m 0.35 0.1831 0.7101 0.0
NZW/LacJ f 0.4429 0.0979 0.6353 0.2504
NZW/LacJ m 0.25 0.1057 0.4579 0.0421
P/J f 0.7 0.0979 0.8925 0.5075
P/J m 0.38 0.1158 0.6078 0.1522
PL/J f 0.4875 0.0915 0.6676 0.3074
PL/J m 0.35 0.0915 0.5301 0.1699
PWD/PhJ f 0.2833 0.1057 0.4912 0.0754
PWD/PhJ m 0.2143 0.0979 0.4068 0.0218
RIIIS/J f 0.275 0.0915 0.4551 0.0949
RIIIS/J m 0.325 0.0915 0.5051 0.1449
SJL/J f 0.6286 0.0979 0.8211 0.4361
SJL/J m 0.2 0.1294 0.4546 0.0
SM/J f 0.4667 0.1057 0.6746 0.2588
SM/J m 0.3444 0.0863 0.5142 0.1747
SWR/J f 0.5714 0.0979 0.7639 0.3789
SWR/J m 0.3 0.0915 0.4801 0.1199
WSB/EiJ f 0.275 0.0915 0.4551 0.0949
WSB/EiJ m 0.3556 0.0863 0.5253 0.1858


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ both 0.325 0.067 0.4568 0.1932
A/J both 0.49 0.0593 0.6066 0.3734
BALB/cByJ both 0.6125 0.067 0.7443 0.4807
BTBR T+ Itpr3tf/J both 0.25 0.0699 0.3875 0.1125
BUB/BnJ both 0.3767 0.0784 0.5309 0.2225
C3H/HeJ both 0.317 0.067 0.4488 0.1852
C57BL/10J both 0.5121 0.0607 0.6315 0.3927
C57BL/6J both 0.35 0.0692 0.4861 0.2139
C57BR/cdJ both 0.55 0.0647 0.6773 0.4227
C57L/J both 0.4429 0.0692 0.579 0.3067
CBA/J both 0.235 0.1083 0.448 0.022
DBA/2J both 0.35 0.0747 0.497 0.203
FVB/NJ both 0.3512 0.0616 0.4723 0.2301
KK/HlJ both 0.2369 0.072 0.3786 0.0952
MRL/MpJ both 0.4625 0.067 0.5943 0.3307
NOD.B10Sn-H2b/J both 0.5643 0.0692 0.7004 0.4282
NON/ShiLtJ both 0.2857 0.0758 0.4348 0.1366
NZO/HlLtJ both 0.64 0.1003 0.8372 0.4428
NZW/LacJ both 0.3464 0.072 0.4881 0.2048
P/J both 0.54 0.0758 0.6891 0.3909
PL/J both 0.4188 0.0647 0.5461 0.2914
PWD/PhJ both 0.2488 0.072 0.3905 0.1071
RIIIS/J both 0.3 0.0647 0.4273 0.1727
SJL/J both 0.4143 0.0811 0.5739 0.2547
SM/J both 0.4056 0.0682 0.5398 0.2714
SWR/J both 0.4357 0.067 0.5675 0.3039
WSB/EiJ both 0.3153 0.0629 0.439 0.1915




  GWAS USING LINEAR MIXED MODELS