Project measure / variable:   Peters4   BASO_M06

ID, description, units MPD:24325   BASO_M06   basophil count (BASO; units per volume x 103)   [n/µL]  at age 6mo  
Data set, strains Peters4   inbred   30 strains     sex: both     age: 26wks
Procedure complete blood count
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  STRAIN COMPARISON PLOT
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Peters4 - basophil count (BASO; units per volume x 103) at age 6mo



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested30 strains30 strains
Mean of the strain means0.0265   n/µL 0.0270   n/µL
Median of the strain means0.0231   n/µL 0.0206   n/µL
SD of the strain means± 0.0176 ± 0.0174
Coefficient of variation (CV)0.663 0.647
Min–max range of strain means0.00625   –   0.0933   n/µL 0.00714   –   0.0883   n/µL
Mean sample size per strain7.7   mice 7.4   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 0.0001 0.0001 0.2707 0.6031
strain 29 0.0945 0.0033 17.3272 < 0.0001
sex:strain 29 0.027 0.0009 4.9442 < 0.0001
Residuals 393 0.0739 0.0002


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
Select table page:
Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ f 0.0125 0.00707   8 0.0025 0.566 -0.8
129S1/SvImJ m 0.0183 0.00718   12 0.00207 0.391 0.01, 0.03 -0.5
A/J f 0.016 0.00894   5 0.004 0.559 0.01, 0.03 -0.6
A/J m 0.01 0.00756   8 0.00267 0.756 -0.97
BALB/cByJ f 0.0467 0.0413   6 0.0169 0.885 0.01, 0.12 1.15
BALB/cByJ m 0.0375 0.0225   8 0.00796 0.601 0.01, 0.07 0.6
BTBR T+ Itpr3tf/J f 0.0288 0.00835   8 0.00295 0.29 0.02, 0.04 0.13
BTBR T+ Itpr3tf/J m 0.0175 0.00707   8 0.0025 0.404 0.01, 0.03 -0.54
BUB/BnJ f 0.0237 0.00518   8 0.00183 0.218 0.02, 0.03 -0.16
BUB/BnJ m 0.05 0.0252   7 0.00951 0.503 0.01, 0.09 1.32
C3H/HeJ f 0.0186 0.009   7 0.0034 0.484 0.01, 0.03 -0.45
C3H/HeJ m 0.01 0.00535   8 0.00189 0.535 -0.97
C57BL/10J f 0.0487 0.0196   8 0.00693 0.402 0.02, 0.07 1.26
C57BL/10J m 0.0883 0.0436   6 0.0178 0.493 0.04, 0.16 3.52
C57BL/6J f 0.025 0.012   8 0.00423 0.478 0.01, 0.05 -0.09
C57BL/6J m 0.0367 0.0137   6 0.00558 0.373 0.02, 0.06 0.56
C57BLKS/J f 0.0375 0.0175   8 0.0062 0.467 0.02, 0.07 0.62
C57BLKS/J m 0.03 0.01   7 0.00378 0.333 0.02, 0.05 0.17
C57BR/cdJ f 0.0543 0.0244   7 0.00922 0.449 0.04, 0.09 1.58
C57BR/cdJ m 0.055 0.012   8 0.00423 0.217 0.04, 0.08 1.61
C57L/J f 0.0362 0.013   8 0.0046 0.359 0.02, 0.06 0.55
C57L/J m 0.0275 0.0104   8 0.00366 0.376 0.02, 0.05 0.03
CAST/EiJ f 0.019 0.00876   10 0.00277 0.461 -0.43
CAST/EiJ m 0.02 0.0141   2   0.01 0.707 0.01, 0.03 -0.4
CBA/J f 0.0133 0.00516   6 0.00211 0.387 0.01, 0.02 -0.75
CBA/J m 0.015 0.00535   8 0.00189 0.356 0.01, 0.02 -0.69
DBA/2J f 0.03 0.00577   7 0.00218 0.192 0.02, 0.04 0.2
DBA/2J m 0.0386 0.0195   7 0.00738 0.506 0.02, 0.07 0.67
FVB/NJ f 0.01 0.00535   8 0.00189 0.535 -0.94
FVB/NJ m 0.00714 0.00488   7 0.00184 0.683 -1.14
KK/HlJ f 0.03 0.00894   6 0.00365 0.298 0.02, 0.04 0.2
KK/HlJ m 0.0412 0.0223   8 0.00789 0.541 0.02, 0.09 0.82
LP/J f 0.0933 0.0225   6 0.00919 0.241 0.07, 0.13 3.8
LP/J m 0.0362 0.0192   8 0.0068 0.53 0.02, 0.08 0.53
MRL/MpJ f 0.00625 0.00518   8 0.00183 0.828 -1.15
MRL/MpJ m 0.018 0.00837   5 0.00374 0.465 0.01, 0.03 -0.51
NOD.B10Sn-H2b/J f 0.0337 0.0207   8 0.0073 0.612 0.02, 0.08 0.41
NOD.B10Sn-H2b/J m 0.0475 0.0116   8 0.00412 0.245 0.03, 0.06 1.18
NON/ShiLtJ f 0.0112 0.00835   8 0.00295 0.742 -0.87
NON/ShiLtJ m 0.015 0.0105   6 0.00428 0.699 -0.69
NZO/HlLtJ f 0.0225 0.00463   8 0.00164 0.206 0.02, 0.03 -0.23
NZO/HlLtJ m 0.0157 0.00787   7 0.00297 0.501 0.01, 0.03 -0.65
NZW/LacJ f 0.0262 0.00744   8 0.00263 0.283 0.02, 0.04 -0.02
NZW/LacJ m 0.03 0.011   6 0.00447 0.365 0.02, 0.05 0.17
P/J f 0.0075 0.00707   8 0.0025 0.943 -1.08
P/J m 0.03 0.0131   8 0.00463 0.436 0.02, 0.06 0.17
PL/J f 0.0308 0.0144   13 0.004 0.468 0.02, 0.06 0.24
PL/J m 0.0225 0.0104   8 0.00366 0.46 0.01, 0.04 -0.26
PWD/PhJ f 0.0125 0.00463   8 0.00164 0.37 0.01, 0.02 -0.8
PWD/PhJ m 0.0129 0.00488   7 0.00184 0.38 0.01, 0.02 -0.81
RIIIS/J f 0.0163 0.00744   8 0.00263 0.458 0.01, 0.03 -0.58
RIIIS/J m 0.00875 0.00354   8 0.00125 0.404 -1.04
SJL/J f 0.0338 0.0192   8 0.0068 0.57 0.01, 0.06 0.41
SJL/J m 0.0212 0.00835   8 0.00295 0.393 0.01, 0.03 -0.33
SM/J f 0.015 0.00548   6 0.00224 0.365 0.01, 0.02 -0.66
SM/J m 0.01 0.00535   8 0.00189 0.535 -0.97
SWR/J f 0.02 0.0107   8 0.00378 0.535 0.01, 0.04 -0.37
SWR/J m 0.0187 0.00991   8 0.0035 0.529 0.01, 0.03 -0.47
WSB/EiJ f 0.017 0.00823   10 0.0026 0.484 0.01, 0.03 -0.54
WSB/EiJ m 0.02 0.00577   7 0.00218 0.289 0.01, 0.03 -0.4


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ f 0.0125 0.0048 0.022 0.003
129S1/SvImJ m 0.0183 0.004 0.0261 0.0106
A/J f 0.016 0.0061 0.0281 0.0039
A/J m 0.01 0.0048 0.0195 0.0005
BALB/cByJ f 0.0467 0.0056 0.0577 0.0357
BALB/cByJ m 0.0375 0.0048 0.047 0.028
BTBR T+ Itpr3tf/J f 0.0288 0.0048 0.0383 0.0192
BTBR T+ Itpr3tf/J m 0.0175 0.0048 0.027 0.008
BUB/BnJ f 0.0238 0.0048 0.0333 0.0142
BUB/BnJ m 0.05 0.0052 0.0602 0.0398
C3H/HeJ f 0.0186 0.0052 0.0288 0.0084
C3H/HeJ m 0.01 0.0048 0.0195 0.0005
C57BL/10J f 0.0487 0.0048 0.0583 0.0392
C57BL/10J m 0.0883 0.0056 0.0993 0.0773
C57BL/6J f 0.025 0.0048 0.0345 0.0155
C57BL/6J m 0.0367 0.0056 0.0477 0.0257
C57BLKS/J f 0.0375 0.0048 0.047 0.028
C57BLKS/J m 0.03 0.0052 0.0402 0.0198
C57BR/cdJ f 0.0543 0.0052 0.0645 0.0441
C57BR/cdJ m 0.055 0.0048 0.0645 0.0455
C57L/J f 0.0363 0.0048 0.0458 0.0267
C57L/J m 0.0275 0.0048 0.037 0.018
CAST/EiJ f 0.019 0.0043 0.0275 0.0105
CAST/EiJ m 0.02 0.0097 0.0391 0.0009
CBA/J f 0.0133 0.0056 0.0243 0.0023
CBA/J m 0.015 0.0048 0.0245 0.0055
DBA/2J f 0.03 0.0052 0.0402 0.0198
DBA/2J m 0.0386 0.0052 0.0488 0.0284
FVB/NJ f 0.01 0.0048 0.0195 0.0005
FVB/NJ m 0.0071 0.0052 0.0173 0.0
KK/HlJ f 0.03 0.0056 0.041 0.019
KK/HlJ m 0.0413 0.0048 0.0508 0.0317
LP/J f 0.0933 0.0056 0.1043 0.0823
LP/J m 0.0362 0.0048 0.0458 0.0267
MRL/MpJ f 0.0062 0.0048 0.0158 0.0
MRL/MpJ m 0.018 0.0061 0.0301 0.0059
NOD.B10Sn-H2b/J f 0.0338 0.0048 0.0433 0.0242
NOD.B10Sn-H2b/J m 0.0475 0.0048 0.057 0.038
NON/ShiLtJ f 0.0113 0.0048 0.0208 0.0017
NON/ShiLtJ m 0.015 0.0056 0.026 0.004
NZO/HlLtJ f 0.0225 0.0048 0.032 0.013
NZO/HlLtJ m 0.0157 0.0052 0.0259 0.0055
NZW/LacJ f 0.0263 0.0048 0.0358 0.0167
NZW/LacJ m 0.03 0.0056 0.041 0.019
P/J f 0.0075 0.0048 0.017 0.0
P/J m 0.03 0.0048 0.0395 0.0205
PL/J f 0.0308 0.0038 0.0382 0.0233
PL/J m 0.0225 0.0048 0.032 0.013
PWD/PhJ f 0.0125 0.0048 0.022 0.003
PWD/PhJ m 0.0129 0.0052 0.023 0.0027
RIIIS/J f 0.0162 0.0048 0.0258 0.0067
RIIIS/J m 0.0088 0.0048 0.0183 0.0
SJL/J f 0.0338 0.0048 0.0433 0.0242
SJL/J m 0.0213 0.0048 0.0308 0.0117
SM/J f 0.015 0.0056 0.026 0.004
SM/J m 0.01 0.0048 0.0195 0.0005
SWR/J f 0.02 0.0048 0.0295 0.0105
SWR/J m 0.0188 0.0048 0.0283 0.0092
WSB/EiJ f 0.017 0.0043 0.0255 0.0085
WSB/EiJ m 0.02 0.0052 0.0302 0.0098


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ both 0.0154 0.0031 0.0216 0.0093
A/J both 0.013 0.0039 0.0207 0.0053
BALB/cByJ both 0.0421 0.0037 0.0494 0.0348
BTBR T+ Itpr3tf/J both 0.0231 0.0034 0.0299 0.0164
BUB/BnJ both 0.0369 0.0035 0.0439 0.0299
C3H/HeJ both 0.0143 0.0035 0.0213 0.0073
C57BL/10J both 0.0685 0.0037 0.0758 0.0613
C57BL/6J both 0.0308 0.0037 0.0381 0.0236
C57BLKS/J both 0.0338 0.0035 0.0407 0.0268
C57BR/cdJ both 0.0546 0.0035 0.0616 0.0477
C57L/J both 0.0319 0.0034 0.0386 0.0251
CAST/EiJ both 0.0195 0.0053 0.0299 0.0091
CBA/J both 0.0142 0.0037 0.0214 0.0069
DBA/2J both 0.0343 0.0037 0.0415 0.0271
FVB/NJ both 0.0086 0.0035 0.0155 0.0016
KK/HlJ both 0.0356 0.0037 0.0429 0.0283
LP/J both 0.0648 0.0037 0.0721 0.0575
MRL/MpJ both 0.0121 0.0039 0.0198 0.0044
NOD.B10Sn-H2b/J both 0.0406 0.0034 0.0474 0.0339
NON/ShiLtJ both 0.0131 0.0037 0.0204 0.0058
NZO/HlLtJ both 0.0191 0.0035 0.0261 0.0121
NZW/LacJ both 0.0281 0.0037 0.0354 0.0208
P/J both 0.0188 0.0034 0.0255 0.012
PL/J both 0.0266 0.0031 0.0327 0.0206
PWD/PhJ both 0.0127 0.0035 0.0197 0.0057
RIIIS/J both 0.0125 0.0034 0.0192 0.0058
SJL/J both 0.0275 0.0034 0.0342 0.0208
SM/J both 0.0125 0.0037 0.0198 0.0052
SWR/J both 0.0194 0.0034 0.0261 0.0126
WSB/EiJ both 0.0185 0.0034 0.0251 0.0119




  GWAS USING LINEAR MIXED MODELS