Project measure / variable:   Peters4   LYMPH_M06

ID, description, units MPD:24313   LYMPH_M06   lymphocyte count (LYM; units per volume x 103)   [n/µL]  at age 6mo  
Data set, strains Peters4   inbred   30 strains     sex: both     age: 26wks
Procedure complete blood count
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  STRAIN COMPARISON PLOT
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Peters4 - lymphocyte count (LYM; units per volume x 103) at age 6mo



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested30 strains30 strains
Mean of the strain means6.94   n/µL 6.87   n/µL
Median of the strain means6.35   n/µL 6.01   n/µL
SD of the strain means± 2.57 ± 2.59
Coefficient of variation (CV)0.370 0.377
Min–max range of strain means2.03   –   13.3   n/µL 3.88   –   13.1   n/µL
Mean sample size per strain7.7   mice 7.4   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 0.0763 0.0763 0.0292 0.8644
strain 29 2463.8933 84.9618 32.5302 < 0.0001
sex:strain 29 339.4783 11.7061 4.4821 < 0.0001
Residuals 393 1026.4304 2.6118


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
Select table page:
Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ f 6.2 0.796   8 0.281 0.128 5.18, 7.56 -0.29
129S1/SvImJ m 5.43 1.25   12 0.361 0.231 4.36, 8.82 -0.56
A/J f 6.76 3.73   5 1.67 0.551 3.23, 11.6 -0.07
A/J m 4.37 0.921   8 0.326 0.211 2.73, 5.52 -0.97
BALB/cByJ f 7.58 1.13   6 0.463 0.149 5.92, 8.98 0.25
BALB/cByJ m 6.04 2.15   8 0.76 0.356 3.68, 9.12 -0.32
BTBR T+ Itpr3tf/J f 9.07 1.31   8 0.462 0.144 6.89, 11.0 0.83
BTBR T+ Itpr3tf/J m 8.17 1.22   8 0.431 0.149 6.49, 9.89 0.5
BUB/BnJ f 8.73 1.5   8 0.531 0.172 7.2, 12.1 0.7
BUB/BnJ m 9.67 3.16   7 1.2 0.327 5.99, 15.5 1.08
C3H/HeJ f 5.42 0.861   7 0.325 0.159 4.61, 7.11 -0.59
C3H/HeJ m 4.71 0.924   8 0.327 0.196 3.52, 6.13 -0.83
C57BL/10J f 11.1 2.14   8 0.757 0.194 8.53, 14.2 1.62
C57BL/10J m 13.1 2.8   6 1.14 0.213 8.85, 16.5 2.41
C57BL/6J f 5.56 0.853   8 0.302 0.153 4.63, 7.44 -0.54
C57BL/6J m 9.59 1.51   6 0.616 0.157 7.21, 11.7 1.05
C57BLKS/J f 6.6 1.92   8 0.68 0.292 4.26, 9.46 -0.13
C57BLKS/J m 10.7 2.44   7 0.922 0.227 6.96, 14.9 1.48
C57BR/cdJ f 9.84 2.04   7 0.771 0.207 7.72, 12.9 1.13
C57BR/cdJ m 11.1 1.02   8 0.361 0.092 9.89, 12.9 1.64
C57L/J f 10.1 1.24   8 0.44 0.123 8.81, 12.0 1.23
C57L/J m 10.9 1.01   8 0.356 0.0927 9.3, 12.4 1.56
CAST/EiJ f 7.09 1.54   10 0.487 0.217 4.19, 8.64 0.06
CAST/EiJ m 5.09 2.43   2   1.72 0.478 3.37, 6.81 -0.69
CBA/J f 4.73 0.954   6 0.389 0.202 3.2, 5.62 -0.86
CBA/J m 5.06 1.9   8 0.671 0.375 1.6, 7.25 -0.7
DBA/2J f 7.61 1.79   7 0.676 0.235 6.26, 11.0 0.26
DBA/2J m 5.81 1.41   7 0.534 0.243 3.48, 7.65 -0.41
FVB/NJ f 5.63 1.48   8 0.522 0.262 4.1, 8.45 -0.51
FVB/NJ m 3.96 0.971   7 0.367 0.245 2.47, 5.73 -1.12
KK/HlJ f 5.78 1.25   6 0.512 0.217 4.29, 8.06 -0.45
KK/HlJ m 5.3 1.75   8 0.619 0.331 2.45, 7.12 -0.61
LP/J f 13.3 2.13   6 0.87 0.16 10.8, 16.4 2.48
LP/J m 11.5 1.64   8 0.58 0.143 9.31, 14.1 1.79
MRL/MpJ f 2.03 1.13   8 0.401 0.559 0.24, 3.85 -1.91
MRL/MpJ m 4.37 0.478   5 0.214 0.109 3.81, 5.03 -0.97
NOD.B10Sn-H2b/J f 3.9 1.19   8 0.42 0.305 1.95, 5.64 -1.18
NOD.B10Sn-H2b/J m 3.88 1.0   8 0.355 0.259 1.95, 5.07 -1.16
NON/ShiLtJ f 4.74 1.14   8 0.404 0.241 2.94, 6.95 -0.86
NON/ShiLtJ m 4.9 1.27   6 0.519 0.26 3.26, 6.14 -0.76
NZO/HlLtJ f 8.58 1.22   8 0.43 0.142 6.94, 10.9 0.64
NZO/HlLtJ m 5.98 1.43   7 0.539 0.239 4.18, 8.34 -0.34
NZW/LacJ f 10.9 1.55   8 0.549 0.142 9.08, 13.2 1.54
NZW/LacJ m 8.55 1.02   6 0.418 0.12 7.54, 10.3 0.65
P/J f 4.26 1.45   8 0.513 0.34 1.35, 6.13 -1.04
P/J m 6.22 2.36   8 0.835 0.38 2.86, 9.85 -0.25
PL/J f 6.03 1.06   13 0.295 0.176 4.61, 8.43 -0.35
PL/J m 5.29 0.537   8 0.19 0.102 4.32, 6.18 -0.61
PWD/PhJ f 4.59 1.43   8 0.506 0.311 2.78, 7.16 -0.91
PWD/PhJ m 5.09 1.15   7 0.435 0.226 3.53, 6.52 -0.69
RIIIS/J f 5.61 0.906   8 0.32 0.161 4.54, 7.1 -0.52
RIIIS/J m 6.61 0.768   8 0.271 0.116 5.44, 7.62 -0.1
SJL/J f 10.4 2.84   8 1.0 0.273 4.06, 13.2 1.35
SJL/J m 7.69 2.59   8 0.917 0.337 4.89, 12.6 0.32
SM/J f 4.81 1.3   6 0.531 0.27 3.2, 7.11 -0.83
SM/J m 6.04 0.632   8 0.223 0.105 5.2, 7.12 -0.32
SWR/J f 6.5 2.93   8 1.03 0.45 3.53, 12.7 -0.17
SWR/J m 6.39 1.95   8 0.688 0.305 4.17, 9.54 -0.18
WSB/EiJ f 4.71 1.33   10 0.421 0.282 2.63, 6.46 -0.87
WSB/EiJ m 4.54 1.2   7 0.455 0.265 2.71, 5.88 -0.9


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ f 6.1963 0.5714 7.3196 5.0729
129S1/SvImJ m 5.4267 0.4665 6.3439 4.5095
A/J f 6.764 0.7227 8.1849 5.3431
A/J m 4.3675 0.5714 5.4908 3.2442
BALB/cByJ f 7.5817 0.6598 8.8788 6.2845
BALB/cByJ m 6.0438 0.5714 7.1671 4.9204
BTBR T+ Itpr3tf/J f 9.0725 0.5714 10.1958 7.9492
BTBR T+ Itpr3tf/J m 8.1675 0.5714 9.2908 7.0442
BUB/BnJ f 8.7337 0.5714 9.8571 7.6104
BUB/BnJ m 9.6671 0.6108 10.868 8.4662
C3H/HeJ f 5.4157 0.6108 6.6166 4.2148
C3H/HeJ m 4.7075 0.5714 5.8308 3.5842
C57BL/10J f 11.05 0.5714 12.1733 9.9267
C57BL/10J m 13.125 0.6598 14.4221 11.8279
C57BL/6J f 5.5612 0.5714 6.6846 4.4379
C57BL/6J m 9.5883 0.6598 10.8855 8.2912
C57BLKS/J f 6.5987 0.5714 7.7221 5.4754
C57BLKS/J m 10.7286 0.6108 11.9295 9.5277
C57BR/cdJ f 9.8371 0.6108 11.038 8.6362
C57BR/cdJ m 11.0987 0.5714 12.2221 9.9754
C57L/J f 10.0987 0.5714 11.2221 8.9754
C57L/J m 10.8525 0.5714 11.9758 9.7292
CAST/EiJ f 7.092 0.5111 8.0967 6.0873
CAST/EiJ m 5.09 1.1428 7.3367 2.8433
CBA/J f 4.7267 0.6598 6.0238 3.4295
CBA/J m 5.065 0.5714 6.1883 3.9417
DBA/2J f 7.61 0.6108 8.8109 6.4091
DBA/2J m 5.8129 0.6108 7.0138 4.612
FVB/NJ f 5.6337 0.5714 6.7571 4.5104
FVB/NJ m 3.9643 0.6108 5.1652 2.7634
KK/HlJ f 5.7783 0.6598 7.0755 4.4812
KK/HlJ m 5.2988 0.5714 6.4221 4.1754
LP/J f 13.3 0.6598 14.5971 12.0029
LP/J m 11.5013 0.5714 12.6246 10.3779
MRL/MpJ f 2.0275 0.5714 3.1508 0.9042
MRL/MpJ m 4.37 0.7227 5.7909 2.9491
NOD.B10Sn-H2b/J f 3.8975 0.5714 5.0208 2.7742
NOD.B10Sn-H2b/J m 3.8825 0.5714 5.0058 2.7592
NON/ShiLtJ f 4.7388 0.5714 5.8621 3.6154
NON/ShiLtJ m 4.8983 0.6598 6.1955 3.6012
NZO/HlLtJ f 8.5788 0.5714 9.7021 7.4554
NZO/HlLtJ m 5.9771 0.6108 7.178 4.7762
NZW/LacJ f 10.9475 0.5714 12.0708 9.8242
NZW/LacJ m 8.5467 0.6598 9.8438 7.2495
P/J f 4.2625 0.5714 5.3858 3.1392
P/J m 6.2213 0.5714 7.3446 5.0979
PL/J f 6.0331 0.4482 6.9143 5.1519
PL/J m 5.2888 0.5714 6.4121 4.1654
PWD/PhJ f 4.5925 0.5714 5.7158 3.4692
PWD/PhJ m 5.0943 0.6108 6.2952 3.8934
RIIIS/J f 5.6087 0.5714 6.7321 4.4854
RIIIS/J m 6.6062 0.5714 7.7296 5.4829
SJL/J f 10.4038 0.5714 11.5271 9.2804
SJL/J m 7.69 0.5714 8.8133 6.5667
SM/J f 4.8133 0.6598 6.1105 3.5162
SM/J m 6.0425 0.5714 7.1658 4.9192
SWR/J f 6.5025 0.5714 7.6258 5.3792
SWR/J m 6.3888 0.5714 7.5121 5.2654
WSB/EiJ f 4.711 0.5111 5.7157 3.7063
WSB/EiJ m 4.5414 0.6108 5.7423 3.3405


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ both 5.8115 0.3688 6.5366 5.0863
A/J both 5.5658 0.4607 6.4714 4.6601
BALB/cByJ both 6.8127 0.4364 7.6707 5.9547
BTBR T+ Itpr3tf/J both 8.62 0.404 9.4143 7.8257
BUB/BnJ both 9.2004 0.4182 10.0226 8.3782
C3H/HeJ both 5.0616 0.4182 5.8838 4.2394
C57BL/10J both 12.0875 0.4364 12.9455 11.2295
C57BL/6J both 7.5748 0.4364 8.4328 6.7168
C57BLKS/J both 8.6637 0.4182 9.4859 7.8415
C57BR/cdJ both 10.4679 0.4182 11.2901 9.6457
C57L/J both 10.4756 0.404 11.2699 9.6813
CAST/EiJ both 6.091 0.6259 7.3216 4.8604
CBA/J both 4.8958 0.4364 5.7538 4.0379
DBA/2J both 6.7114 0.4319 7.5606 5.8623
FVB/NJ both 4.799 0.4182 5.6212 3.9768
KK/HlJ both 5.5385 0.4364 6.3965 4.6806
LP/J both 12.4006 0.4364 13.2586 11.5427
MRL/MpJ both 3.1987 0.4607 4.1044 2.2931
NOD.B10Sn-H2b/J both 3.89 0.404 4.6843 3.0957
NON/ShiLtJ both 4.8185 0.4364 5.6765 3.9606
NZO/HlLtJ both 7.2779 0.4182 8.1001 6.4557
NZW/LacJ both 9.7471 0.4364 10.605 8.8891
P/J both 5.2419 0.404 6.0362 4.4476
PL/J both 5.6609 0.3631 6.3748 4.947
PWD/PhJ both 4.8434 0.4182 5.6656 4.0212
RIIIS/J both 6.1075 0.404 6.9018 5.3132
SJL/J both 9.0469 0.404 9.8412 8.2526
SM/J both 5.4279 0.4364 6.2859 4.57
SWR/J both 6.4456 0.404 7.2399 5.6513
WSB/EiJ both 4.6262 0.3982 5.4091 3.8433




  GWAS USING LINEAR MIXED MODELS