Project measure / variable:   Jaxpheno6   pct_Mono16

ID, description, units MPD:23123   pct_Mono16   splenic monocytes (percentage of total viable cells)   [%]  at age age 16wks  
Data set, strains Jaxpheno6   inbred   8 strains     sex: both     age: 16wks
Procedure immune cell quantification
Ontology mappings

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  STRAIN COMPARISON PLOT
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Jaxpheno6 - splenic monocytes (percentage of total viable cells) at age age 16wks



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested8 strains6 strains
Mean of the strain means4.76   % 4.45   %
Median of the strain means2.50   % 2.65   %
SD of the strain means± 6.43 ± 4.35
Coefficient of variation (CV)1.35 0.977
Min–max range of strain means1.58   –   20.6   % 1.74   –   13.1   %
Mean sample size per strain8.0   mice 7.3   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 0.0592 0.0592 0.0023 0.9619
strain 5 1890.5668 378.1134 14.6984 < 0.0001
sex:strain 5 136.1685 27.2337 1.0587 0.389
Residuals 86 2212.3329 25.7248


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
B6D2F1/J f 2.49 0.283   5 0.126 0.113 2.26, 2.98 -0.35
BALB/cByJ f 1.98 0.17   10 0.0539 0.0862 1.77, 2.25 -0.43
BALB/cByJ m 2.02 0.395   9 0.132 0.195 1.37, 2.55 -0.56
C3H/HeJ f 2.33 0.232   10 0.0732 0.0995 2.06, 2.54 -0.38
C3H/HeJ m 2.62 0.526   5 0.235 0.201 2.2, 3.36 -0.42
C57BL/6J f 2.94 0.296   5 0.132 0.101 2.68, 3.44 -0.28
CBA/J f 2.52 0.633   9 0.211 0.251 1.8, 3.8 -0.35
CBA/J m 2.68 0.557   10 0.176 0.208 1.9, 3.46 -0.41
FVB/NJ f 1.58 0.151   10 0.0477 0.0953 1.38, 1.82 -0.5
FVB/NJ m 1.74 0.498   5 0.223 0.286 1.35, 2.56 -0.62
NOD.CB17-Prkdcscid/J f 20.6 23.3   5 10.4 1.13 2.46
NOD.CB17-Prkdcscid/J m 13.1 2.32   5 1.04 0.176 11.2, 17.1 1.99
NOD/ShiLtJ f 3.67 0.543   10 0.172 0.148 2.86, 4.4 -0.17
NOD/ShiLtJ m 4.54 0.639   10 0.202 0.141 3.33, 5.35 0.02


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
BALB/cByJ f 1.977 1.6039 5.1654 0.0
BALB/cByJ m 2.0244 1.6907 5.3854 0.0
C3H/HeJ f 2.328 1.6039 5.5164 0.0
C3H/HeJ m 2.622 2.2683 7.1311 0.0
CBA/J f 2.5244 1.6907 5.8854 0.0
CBA/J m 2.68 1.6039 5.8684 0.0
FVB/NJ f 1.584 1.6039 4.7724 0.0
FVB/NJ m 1.742 2.2683 6.2511 0.0
NOD.CB17-Prkdcscid/J f 20.56 2.2683 25.0691 16.0509
NOD.CB17-Prkdcscid/J m 13.14 2.2683 17.6491 8.6309
NOD/ShiLtJ f 3.67 1.6039 6.8584 0.4816
NOD/ShiLtJ m 4.545 1.6039 7.7334 1.3566


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
BALB/cByJ both 2.0007 1.1652 4.3171 0.0
C3H/HeJ both 2.475 1.389 5.2363 0.0
CBA/J both 2.6022 1.1652 4.9186 0.2859
FVB/NJ both 1.663 1.389 4.4243 0.0
NOD.CB17-Prkdcscid/J both 16.85 1.6039 20.0384 13.6616
NOD/ShiLtJ both 4.1075 1.1341 6.3621 1.8529




  GWAS USING LINEAR MIXED MODELS