Project measure / variable:   Jaxpheno6   pct_Granu8

ID, description, units MPD:23120   pct_Granu8   splenic granulocytes (percentage of total viable cells)   [%]  at age age 8wks  
Data set, strains Jaxpheno6   inbred   11 strains     sex: both     age: 8wks
Procedure immune cell quantification
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  STRAIN COMPARISON PLOT
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Jaxpheno6 - splenic granulocytes (percentage of total viable cells) at age age 8wks



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested11 strains11 strains
Mean of the strain means1.52   % 1.74   %
Median of the strain means1.16   % 1.26   %
SD of the strain means± 1.05 ± 1.24
Coefficient of variation (CV)0.690 0.715
Min–max range of strain means0.468   –   4.32   % 0.810   –   5.20   %
Mean sample size per strain8.9   mice 10.0   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 5.2393 5.2393 11.3463 0.0009
strain 10 215.8138 21.5814 46.7364 < 0.0001
sex:strain 10 6.2506 0.6251 1.3536 0.2041
Residuals 207 95.5859 0.4618


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
B6.129P2-Apoetm1Unc/J f 1.25 0.217   4 0.109 0.174 0.95, 1.47 -0.26
B6.129P2-Apoetm1Unc/J m 2.06 0.422   5 0.189 0.205 1.44, 2.58 0.26
B6D2F1/J f 0.937 0.205   10 0.0649 0.219 0.73, 1.37 -0.55
B6D2F1/J m 0.81 0.208   5 0.0932 0.257 0.56, 0.99 -0.75
BALB/cByJ f 1.14 0.605   10 0.191 0.532 0.52, 2.14 -0.36
BALB/cByJ m 1.11 0.363   10 0.115 0.328 0.48, 1.57 -0.51
BALB/cJ f 0.778 0.388   10 0.123 0.499 0.35, 1.42 -0.71
BALB/cJ m 1.08 0.306   10 0.0968 0.284 0.63, 1.61 -0.53
C3H/HeJ f 1.93 1.1   5 0.492 0.57 1.03, 3.82 0.39
C3H/HeJ m 2.29 0.627   5 0.28 0.273 1.91, 3.4 0.44
C57BL/6J f 0.934 0.385   30 0.0704 0.413 0.35, 2.26 -0.56
C57BL/6J m 1.26 1.37   15 0.354 1.09 0.27, 4.48 -0.39
CBA/J f 1.16 0.321   10 0.102 0.276 0.71, 1.59 -0.34
CBA/J m 1.01 0.598   20 0.134 0.594 0.27, 3.3 -0.59
DBA/2J f 1.89 1.14   10 0.36 0.601 0.86, 4.81 0.36
DBA/2J m 1.63 0.661   15 0.171 0.406 0.96, 3.16 -0.09
FVB/NJ f 0.468 0.144   5 0.0646 0.309 0.27, 0.64 -1.0
FVB/NJ m 0.955 0.332   10 0.105 0.348 0.52, 1.55 -0.63
NOD.CB17-Prkdcscid/J f 4.32 0.987   5 0.441 0.228 2.92, 5.44 2.68
NOD.CB17-Prkdcscid/J m 5.2 1.21   10 0.383 0.233 3.69, 7.62 2.78
NOD/ShiLtJ f 1.88 0.411   15 0.106 0.219 1.23, 2.49 0.35
NOD/ShiLtJ m 1.74 0.7   10 0.221 0.403 0.87, 2.68 0.0


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
B6.129P2-Apoetm1Unc/J f 1.25 0.3398 1.9198 0.5802
B6.129P2-Apoetm1Unc/J m 2.062 0.3039 2.6611 1.4629
B6D2F1/J f 0.937 0.2149 1.3606 0.5134
B6D2F1/J m 0.81 0.3039 1.4091 0.2109
BALB/cByJ f 1.137 0.2149 1.5606 0.7134
BALB/cByJ m 1.109 0.2149 1.5326 0.6854
BALB/cJ f 0.778 0.2149 1.2016 0.3544
BALB/cJ m 1.079 0.2149 1.5026 0.6554
C3H/HeJ f 1.928 0.3039 2.5271 1.3289
C3H/HeJ m 2.292 0.3039 2.8911 1.6929
C57BL/6J f 0.9343 0.1241 1.1789 0.6897
C57BL/6J m 1.2607 0.1755 1.6066 0.9148
CBA/J f 1.162 0.2149 1.5856 0.7384
CBA/J m 1.0075 0.1519 1.3071 0.7079
DBA/2J f 1.894 0.2149 2.3176 1.4704
DBA/2J m 1.6267 0.1755 1.9726 1.2808
FVB/NJ f 0.468 0.3039 1.0671 0.0
FVB/NJ m 0.955 0.2149 1.3786 0.5314
NOD.CB17-Prkdcscid/J f 4.324 0.3039 4.9231 3.7249
NOD.CB17-Prkdcscid/J m 5.2 0.2149 5.6236 4.7764
NOD/ShiLtJ f 1.8807 0.1755 2.2266 1.5348
NOD/ShiLtJ m 1.735 0.2149 2.1586 1.3114


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
B6.129P2-Apoetm1Unc/J both 1.656 0.2279 2.1053 1.2067
B6D2F1/J both 0.8735 0.1861 1.2404 0.5066
BALB/cByJ both 1.123 0.1519 1.4226 0.8234
BALB/cJ both 0.9285 0.1519 1.2281 0.6289
C3H/HeJ both 2.11 0.2149 2.5336 1.6864
C57BL/6J both 1.0975 0.1074 1.3093 0.8857
CBA/J both 1.0848 0.1316 1.3442 0.8253
DBA/2J both 1.7603 0.1387 2.0338 1.4869
FVB/NJ both 0.7115 0.1861 1.0784 0.3446
NOD.CB17-Prkdcscid/J both 4.762 0.1861 5.1289 4.3951
NOD/ShiLtJ both 1.8078 0.1387 2.0813 1.5344




  GWAS USING LINEAR MIXED MODELS