Project measure / variable:   Jaxpheno6   pct_B_16

ID, description, units MPD:23110   pct_B_16   splenic B cells (percentage of total viable cells)   [%]  at age age 16wks  
Data set, strains Jaxpheno6   inbred   8 strains     sex: both     age: 16wks
Procedure immune cell quantification
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  STRAIN COMPARISON PLOT
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Jaxpheno6 - splenic B cells (percentage of total viable cells) at age age 16wks



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested8 strains6 strains
Mean of the strain means50.8   % 44.5   %
Median of the strain means54.9   % 51.4   %
SD of the strain means± 21.7 ± 21.2
Coefficient of variation (CV)0.427 0.477
Min–max range of strain means1.85   –   72.4   % 2.38   –   59.2   %
Mean sample size per strain8.0   mice 7.3   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 10.5713 10.5713 0.7224 0.3977
strain 5 25566.0615 5113.2123 349.4331 < 0.0001
sex:strain 5 115.7708 23.1542 1.5823 0.1736
Residuals 86 1258.4278 14.6329


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
B6D2F1/J f 72.4 2.64   5 1.18 0.0365 68.5, 74.8 0.99
BALB/cByJ f 52.9 6.36   10 2.01 0.12 35.8, 59.3 0.1
BALB/cByJ m 55.2 2.39   9 0.798 0.0433 50.0, 57.5 0.5
C3H/HeJ f 50.1 3.13   10 0.99 0.0625 44.7, 53.4 -0.03
C3H/HeJ m 46.5 1.25   5 0.559 0.0269 45.3, 48.6 0.09
C57BL/6J f 67.1 2.75   5 1.23 0.0409 62.7, 70.3 0.75
CBA/J f 60.5 2.93   9 0.976 0.0484 56.0, 65.0 0.45
CBA/J m 59.2 3.24   10 1.02 0.0547 52.6, 64.3 0.69
FVB/NJ f 56.9 5.88   10 1.86 0.103 50.6, 66.3 0.28
FVB/NJ m 56.2 4.38   5 1.96 0.078 49.8, 60.3 0.55
NOD.CB17-Prkdcscid/J f 1.85 1.14   5 0.508 0.615 -2.26
NOD.CB17-Prkdcscid/J m 2.38 0.412   5 0.184 0.173 1.94, 2.87 -1.98
NOD/ShiLtJ f 44.9 3.32   10 1.05 0.074 40.6, 49.5 -0.27
NOD/ShiLtJ m 47.6 3.29   10 1.04 0.0692 42.7, 52.6 0.15


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
BALB/cByJ f 52.87 1.2097 55.2747 50.4653
BALB/cByJ m 55.2444 1.2751 57.7793 52.7096
C3H/HeJ f 50.1 1.2097 52.5047 47.6953
C3H/HeJ m 46.5 1.7107 49.9008 43.0992
CBA/J f 60.4556 1.2751 62.9904 57.9207
CBA/J m 59.19 1.2097 61.5947 56.7853
FVB/NJ f 56.92 1.2097 59.3247 54.5153
FVB/NJ m 56.16 1.7107 59.5608 52.7592
NOD.CB17-Prkdcscid/J f 1.85 1.7107 5.2508 0.0
NOD.CB17-Prkdcscid/J m 2.384 1.7107 5.7848 0.0
NOD/ShiLtJ f 44.88 1.2097 47.2847 42.4753
NOD/ShiLtJ m 47.6 1.2097 50.0047 45.1953


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
BALB/cByJ both 54.0572 0.8788 55.8042 52.3102
C3H/HeJ both 48.3 1.0476 50.3826 46.2174
CBA/J both 59.8228 0.8788 61.5698 58.0758
FVB/NJ both 56.54 1.0476 58.6226 54.4574
NOD.CB17-Prkdcscid/J both 2.117 1.2097 4.5217 0.0
NOD/ShiLtJ both 46.24 0.8554 47.9404 44.5396




  GWAS USING LINEAR MIXED MODELS